UHGV-0373185 (vOTU-062945)

Viral Genome: UHGV-0373185

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0373185
vOTU ID	vOTU-062945
Representative Genome?	Yes
Source	mMGE
Original genome ID	k141_379_round8-12~2800228
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.92 (High-quality)
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.43
Jumbo phage	No

Genome content
Genome length (bp)	42,093
GC content	42.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	92%
Average CDS length (bps)	578.82
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.92)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0373185_7	K07451	46.9	0.00000000000054	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0373185_7	phrog_144	106.4	2.2e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0373185_7	UniRef90_A0A2I1K7F5	164.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0373185_7	1178540.BA70_19265	137.0	3.51e-40	HNH endonuclease	N/A
Pfam	UHGV-0373185_7	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0373185_7	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0373185_7	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_10	phrog_36	73.3	4.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0373185_10	UniRef90_UPI00094E52C3	63.9	0.000000000304	N/A	N/A
eggNOG-mapper	UHGV-0373185_10	1336234.JAGN01000004_gene531	68.2	0.00000000000134	N/A	N/A
Pfam	UHGV-0373185_10	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0373185_10	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0373185_10	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_14	phrog_463	125.5	4.4e-37	anti-repressor	transcription regulation
UniRef90	UHGV-0373185_14	UniRef90_A0A2X0QIH9	235.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0373185_14	1321779.HMPREF1984_00124	155.0	3.78351e-44	BRO family, N-terminal domain	N/A
Pfam	UHGV-0373185_14	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0373185_14	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0373185_14	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0373185_14	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_15	phrog_1992	114.4	7.8e-34	MazG-like pyrophosphatase	other
UniRef90	UHGV-0373185_15	UniRef90_UPI001CD745A4	84.7	2.62e-17	MazG-like family protein	N/A
eggNOG-mapper	UHGV-0373185_15	537874.B3GVZ0_9CAUD	77.8	0.00000000000000141	protein disulfide oxidoreductase activity	N/A
structural_annotation	UHGV-0373185_15	PF08761,COG4508	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_18	phrog_954	229.6	0	DNA methyltransferase	other
UniRef90	UHGV-0373185_18	UniRef90_A0A4D6AN46	253.0	0	Putative methyltransferase	N/A
eggNOG-mapper	UHGV-0373185_18	35344.A0A097PAU8_BPT12	241.0	0	methyltransferase activity	N/A
PADLOC	UHGV-0373185_18	oMTase_00019	245.2	0	orphan methyltransferase	RM
Pfam	UHGV-0373185_18	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
structural_annotation	UHGV-0373185_18	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
Pfam	UHGV-0373185_20	PF06289	N/A	N/A	Flagellar and Swarming motility proteins	FlbD
PHROG	UHGV-0373185_22	phrog_121	41.6	0.000000000019	N/A	unknown function
Pfam	UHGV-0373185_22	PF07852	N/A	N/A	N/A	DUF1642
PHROG	UHGV-0373185_24	phrog_98	75.1	1.2e-22	N/A	unknown function
UniRef90	UHGV-0373185_24	UniRef90_W1Q5W8	238.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0373185_24	1500386.A0A060ABA9_9CAUD	60.1	0.00000000365	YopX protein	N/A
Pfam	UHGV-0373185_24	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-0373185_25	phrog_121	43.1	0.0000000000067	N/A	unknown function
Pfam	UHGV-0373185_25	PF07852	N/A	N/A	N/A	DUF1642
UniRef90	UHGV-0373185_28	UniRef90_UPI0010D6BC53	71.2	0.0000000000155	N/A	N/A
eggNOG-mapper	UHGV-0373185_28	1154860.SAG0136_06360	157.0	2.12997e-41	N/A	N/A
COG	UHGV-0373185_28	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
KOfam	UHGV-0373185_29	K06191	70.1	4.3e-20	nrdH; glutaredoxin-like protein NrdH	N/A
PHROG	UHGV-0373185_29	phrog_22	63.7	3.2e-18	thioredoxin domain	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0373185_29	UniRef90_W1Q2H5	103.0	1.67e-27	Glutaredoxin	N/A
eggNOG-mapper	UHGV-0373185_29	592010.GCWU000182_001476	103.0	2.81e-28	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins	N/A
Pfam	UHGV-0373185_29	PF00462	N/A	N/A	Glutaredoxin	Glutaredoxin
COG	UHGV-0373185_29	COG0695	N/A	N/A	Glutaredoxin	N/A
structural_annotation	UHGV-0373185_29	PF00462,MF_01132,NF007657,COG0695	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_32	phrog_1485	87.8	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0373185_32	1560313.A0A0D3MSP2_9CAUD	76.3	0.00000000000000314	N/A	N/A
Pfam	UHGV-0373185_32	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
KOfam	UHGV-0373185_34	K03111	119.3	5.4e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0373185_34	phrog_44	132.4	3.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0373185_34	UniRef90_A0A8B0GNM4	127.0	5.59e-35	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0373185_34	46256.BBIK01000005_gene910	119.0	3.9e-32	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0373185_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0373185_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0373185_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0373185_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0373185_34	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0373185_36	K11144	205.9	0	dnaI; primosomal protein DnaI	N/A
PHROG	UHGV-0373185_36	phrog_50	110.7	1.7e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0373185_36	UniRef90_A0A2Z3HK13	136.0	1.57e-34	Primosomal protein DnaI	N/A
eggNOG-mapper	UHGV-0373185_36	1122146.AUHP01000009_gene846	130.0	9.11e-33	Primosomal protein DnaI	N/A
Pfam	UHGV-0373185_36	PF07319	N/A	N/A	Primosomal protein DnaI N-terminus	DnaI_N
Pfam	UHGV-0373185_36	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0373185_36	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
PHROG	UHGV-0373185_37	phrog_428	166.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0373185_37	UniRef90_A0A4P6YRY3	192.0	0	Alpha/beta hydrolase	N/A
eggNOG-mapper	UHGV-0373185_37	642492.Clole_1831	162.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0373185_37	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0373185_37	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0373185_37	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0373185_37	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
structural_annotation	UHGV-0373185_37	PF13730,MF_01909,NF040939,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_38	phrog_398	221.9	0	N/A	unknown function
UniRef90	UHGV-0373185_38	UniRef90_UPI000CF9A60D	160.0	1.4013e-45	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0373185_38	1234679.BN424_2645	177.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0373185_38	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0373185_38	PF16784	N/A	N/A	N/A	N/A
UniRef90	UHGV-0373185_40	UniRef90_A0A1L4BYT9	52.4	0.00000143	HTH araC/xylS-type domain-containing protein	N/A
UniRef90	UHGV-0373185_41	UniRef90_S4GU05	85.5	1.03e-20	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0373185_41	1211035.CD30_04635	53.9	0.00000000556	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0373185_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0373185_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0373185_41	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0373185_42	K01356	155.2	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0373185_42	phrog_4	123.8	1.6e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0373185_42	UniRef90_A0A6G7WK65	268.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0373185_42	1274524.BSONL12_05983	226.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0373185_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0373185_42	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0373185_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0373185_42	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0373185_45	K14059	197.1	0	int; integrase	N/A
PHROG	UHGV-0373185_45	phrog_1	192.9	0	integrase	integration and excision
UniRef90	UHGV-0373185_45	UniRef90_W1Q2I6	327.0	0	Site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0373185_45	592010.GCWU000182_001444	327.0	0	Phage integrase family	N/A
Pfam	UHGV-0373185_45	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0373185_45	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0373185_45	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0373185_45	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0373185_46	PF13443,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_47	phrog_3861	125.9	0	amidase	lysis
UniRef90	UHGV-0373185_47	UniRef90_W1Q2N4	917.0	0	Cpl-7 lysozyme protein	N/A
eggNOG-mapper	UHGV-0373185_47	592010.GCWU000182_001504	917.0	0	Pfam:Cpl-7	N/A
Pfam	UHGV-0373185_47	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0373185_47	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0373185_47	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0373185_47	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0373185_47	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-0373185_48	phrog_33625	79.8	1.7e-23	holin	lysis
UniRef90	UHGV-0373185_48	UniRef90_W1Q2L7	180.0	0	Holin, phage phi LC3 family	N/A
eggNOG-mapper	UHGV-0373185_48	592010.GCWU000182_001503	180.0	0	Bacteriophage holin	N/A
Pfam	UHGV-0373185_48	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0373185_48	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0373185_48	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0373185_48	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_49	phrog_1296	81.3	6.9e-24	holin	lysis
UniRef90	UHGV-0373185_49	UniRef90_A0A139NAW6	62.8	0.0000000000687	Phage holin	N/A
PHROG	UHGV-0373185_51	phrog_1554	42.4	0.0000000000095	N/A	unknown function
PHROG	UHGV-0373185_53	phrog_1330	69.5	2e-20	tail protein	tail
UniRef90	UHGV-0373185_53	UniRef90_W1Q2L3	179.0	0	Gp58 domain-containing protein	N/A
eggNOG-mapper	UHGV-0373185_53	883081.HMPREF9698_01625	104.0	3.67e-21	gp58-like protein	N/A
Pfam	UHGV-0373185_53	PF07902	N/A	N/A	gp58-like protein	Gp58
COG	UHGV-0373185_53	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0373185_53	PF20132	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_55	phrog_1067	100.3	2.1e-29	minor head protein	head and packaging
eggNOG-mapper	UHGV-0373185_55	592010.GCWU000182_001496	138.0	3.65e-31	Phage minor structural protein	N/A
Pfam	UHGV-0373185_55	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0373185_55	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0373185_56	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_57	phrog_1293	534.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0373185_57	UniRef90_UPI001BD85B59	754.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0373185_57	1121871.AUAT01000002_gene1347	650.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0373185_57	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0373185_57	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0373185_57	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0373185_57	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_58	phrog_187	44.8	0.00000000000088	head-tail adaptor	connector
PHROG	UHGV-0373185_59	phrog_88	130.5	1e-38	major tail protein	tail
UniRef90	UHGV-0373185_59	UniRef90_UPI001AE5DC52	121.0	5.28e-31	phage tail protein	N/A
eggNOG-mapper	UHGV-0373185_59	1121871.AUAT01000002_gene1350	110.0	2.45e-27	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0373185_59	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0373185_59	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0373185_59	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_60	phrog_78	47.4	0.00000000000023	tail terminator	connector
PHROG	UHGV-0373185_61	phrog_5	51.0	0.000000000000041	tail completion or Neck1 protein	connector
UniRef90	UHGV-0373185_61	UniRef90_UPI001A2EC611	135.0	2.87e-38	HK97 gp10 family phage protein	N/A
NCBIFam	UHGV-0373185_61	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0373185_61	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_62	phrog_25	48.1	0.00000000000022	head closure Hc1	connector
UniRef90	UHGV-0373185_62	UniRef90_UPI001A1C46E4	161.0	0	Phage head closure protein	N/A
Pfam	UHGV-0373185_62	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0373185_62	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0373185_62	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
PHROG	UHGV-0373185_64	phrog_10	170.2	0	major head protein	head and packaging
UniRef90	UHGV-0373185_64	UniRef90_UPI001B929868	405.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0373185_64	1121871.AUAT01000002_gene1355	331.0	0	phage major capsid protein, HK97	N/A
Pfam	UHGV-0373185_64	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0373185_64	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0373185_64	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0373185_64	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0373185_65	K06904	131.2	1.2e-38	N/A	N/A
PHROG	UHGV-0373185_65	phrog_80	138.0	9.40005e-41	head maturation protease	head and packaging
UniRef90	UHGV-0373185_65	UniRef90_A0A4Y9J3F6	185.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0373185_65	1121871.AUAT01000002_gene1357	166.0	0	Prohead protease, HK97 family	N/A
Pfam	UHGV-0373185_65	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0373185_65	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0373185_65	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0373185_65	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_66	phrog_12	318.6	0	portal protein	head and packaging
UniRef90	UHGV-0373185_66	UniRef90_UPI00040C7753	482.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0373185_66	1121871.AUAT01000002_gene1358	482.0	0	portal protein	N/A
Pfam	UHGV-0373185_66	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0373185_66	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0373185_66	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0373185_66	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0373185_67	phrog_9	353.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0373185_67	UniRef90_UPI001BD8F393	687.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0373185_67	1121871.AUAT01000002_gene1359	636.0	0	Phage Terminase	N/A
Pfam	UHGV-0373185_67	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0373185_67	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0373185_67	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0373185_67	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A