UHGV-0375453 (vOTU-003967)

Viral Genome: UHGV-0375453

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0375453
vOTU ID	vOTU-003967
Representative Genome?	Yes
Source	mMGE
Original genome ID	k119_56048_round8-12~1259582
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9772
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.27
Jumbo phage	No

Genome content
Genome length (bp)	40,277
GC content	52.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	91%
Average CDS length (bps)	564.69
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0375453_1	K14059	179.6	0	int; integrase	N/A
PHROG	UHGV-0375453_1	phrog_1	166.1	0	integrase	integration and excision
UniRef90	UHGV-0375453_1	UniRef90_A0A367GI93	227.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0375453_1	1507.HMPREF0262_00307	165.0	1.26117e-44	Phage integrase family	N/A
Pfam	UHGV-0375453_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0375453_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0375453_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0375453_2	K07729	40.4	0.000000000034	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0375453_2	UniRef90_A0A2A7B6N3	192.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0375453_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0375453_2	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0375453_5	2754.EH55_07110	97.4	1.81e-20	N/A	N/A
structural_annotation	UHGV-0375453_5	COG5342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375453_6	PF06776,COG5342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375453_9	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_10	phrog_8	42.4	0.000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0375453_10	UniRef90_A0A2A7AM72	130.0	2.8e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0375453_10	1378168.N510_01712	70.9	0.000000000000285	N/A	N/A
Pfam	UHGV-0375453_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0375453_10	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375453_11	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_18	phrog_14970	47.3	0.00000000000043	N/A	unknown function
COG	UHGV-0375453_18	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0375453_18	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_19	phrog_72	46.3	0.00000000000082	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0375453_19	411471.SUBVAR_05829	139.0	2.58e-39	N/A	N/A
structural_annotation	UHGV-0375453_19	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_21	phrog_7566	86.8	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0375453_21	411471.SUBVAR_05830	105.0	3.19e-28	N/A	N/A
KOfam	UHGV-0375453_22	K03111	146.7	2.49431e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0375453_22	phrog_44	148.9	2.66247e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375453_22	UniRef90_A0A329TTF5	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0375453_22	748224.HMPREF9436_00638	211.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0375453_22	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0375453_22	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0375453_22	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0375453_22	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0375453_22	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_23	phrog_6969	53.6	0.000000000000004	N/A	unknown function
UniRef90	UHGV-0375453_23	UniRef90_A0A843HT15	79.3	3.66e-16	Winged helix DNA-binding protein	N/A
eggNOG-mapper	UHGV-0375453_23	1232446.BAIE02000002_gene816	75.5	0.0000000000000167	N/A	N/A
Pfam	UHGV-0375453_23	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0375453_23	PF05584,MF_01819,TIGR04176,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0375453_24	UniRef90_UPI001CBE86CE	161.0	0	N/A	N/A
eggNOG-mapper	UHGV-0375453_24	748224.HMPREF9436_00735	159.0	0	N/A	N/A
Pfam	UHGV-0375453_24	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0375453_24	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0375453_25	K03496	205.3	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0375453_25	phrog_164	154.4	1.4013e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375453_25	UniRef90_A0A2A7B6H3	355.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0375453_25	411471.SUBVAR_05839	232.0	0	AAA domain	N/A
Pfam	UHGV-0375453_25	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0375453_25	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0375453_25	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0375453_26	UniRef90_A0A845R8R0	110.0	2.29e-28	N/A	N/A
KOfam	UHGV-0375453_27	K03497	90.6	3e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0375453_27	phrog_4715	115.0	8.6e-34	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375453_27	UniRef90_A0A2A7B6Q0	367.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0375453_27	411471.SUBVAR_05842	179.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0375453_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0375453_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0375453_27	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375453_28	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_34	phrog_8680	197.5	0	N/A	unknown function
UniRef90	UHGV-0375453_34	UniRef90_A0A844D688	439.0	0	N/A	N/A
eggNOG-mapper	UHGV-0375453_34	1423790.BN53_04265	182.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0375453_34	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0375453_34	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0375453_34	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_36	phrog_119	56.4	4.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375453_36	UniRef90_A0A2A7B6I3	227.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0375453_36	610130.Closa_0739	106.0	2.55e-28	HNH nucleases	N/A
Pfam	UHGV-0375453_36	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0375453_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0375453_38	phrog_13845	56.0	5.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0375453_38	1399942.U3PDR2_9CAUD	66.6	0.0000000000016	N/A	N/A
structural_annotation	UHGV-0375453_38	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_39	phrog_9	241.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0375453_39	UniRef90_A0A2A7ALT4	1058.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0375453_39	610130.Closa_0741	640.0	0	Phage Terminase	N/A
Pfam	UHGV-0375453_39	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0375453_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0375453_39	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_40	phrog_12	126.5	2.1e-37	portal protein	head and packaging
UniRef90	UHGV-0375453_40	UniRef90_A0A2A7B6S8	559.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0375453_40	349161.Dred_2606	261.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0375453_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0375453_40	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0375453_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0375453_40	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0375453_41	K01358	71.0	2.4e-20	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0375453_41	phrog_94	130.3	2.3e-38	head maturation protease	head and packaging
UniRef90	UHGV-0375453_41	UniRef90_UPI00111E41DA	137.0	2.14e-36	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0375453_41	1232452.BAIB02000007_gene1626	129.0	8.77e-34	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0375453_41	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0375453_41	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0375453_41	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_42	phrog_10	129.3	2.6e-38	major head protein	head and packaging
UniRef90	UHGV-0375453_42	UniRef90_A0A2A7B712	700.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0375453_42	1235792.C808_00086	436.0	0	Phage capsid family	N/A
Pfam	UHGV-0375453_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0375453_42	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0375453_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0375453_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0375453_42	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_43	phrog_749	59.0	8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0375453_43	1211817.CCAT010000053_gene2133	65.5	0.00000000000198	N/A	N/A
PHROG	UHGV-0375453_44	phrog_19734	93.8	1.7e-27	N/A	unknown function
UniRef90	UHGV-0375453_44	UniRef90_A0A0D8I708	79.3	1.88e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0375453_44	349161.Dred_2602	73.2	0.00000000000000773	N/A	N/A
structural_annotation	UHGV-0375453_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0375453_45	999413.HMPREF1094_02005	67.8	0.000000000000284	N/A	N/A
structural_annotation	UHGV-0375453_45	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_46	phrog_5	48.9	0.000000000000072	tail completion or Neck1 protein	connector
UniRef90	UHGV-0375453_46	UniRef90_A0A1C6FG30	117.0	1.72e-30	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0375453_46	908340.HMPREF9406_2573	109.0	4.98e-28	N/A	N/A
structural_annotation	UHGV-0375453_46	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_47	phrog_88	90.6	2e-26	major tail protein	tail
UniRef90	UHGV-0375453_47	UniRef90_A0A3R6A072	100.0	6.35e-23	Phage tail protein	N/A
eggNOG-mapper	UHGV-0375453_47	33035.JPJF01000039_gene278	67.8	0.0000000000281	N/A	N/A
NCBIFam	UHGV-0375453_47	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0375453_47	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_50	phrog_9959	99.1	2.9e-29	tail length tape measure protein	tail
UniRef90	UHGV-0375453_50	UniRef90_A0A2A7ALS3	688.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0375453_50	1492737.FEM08_12070	141.0	4.38e-32	tape measure	N/A
Pfam	UHGV-0375453_50	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0375453_50	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0375453_50	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0375453_50	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_51	phrog_33	76.5	6.5e-22	distal tail protein Dit	tail
UniRef90	UHGV-0375453_51	UniRef90_A0A173Z1X4	139.0	6.06e-37	Phage-related protein	N/A
eggNOG-mapper	UHGV-0375453_51	908340.HMPREF9406_2569	92.8	4.78e-20	phage tail	N/A
NCBIFam	UHGV-0375453_51	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0375453_51	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0375453_51	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_52	phrog_1067	172.7	0	minor head protein	head and packaging
UniRef90	UHGV-0375453_52	UniRef90_A0A2A7AM44	697.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0375453_52	1123263.AUKY01000068_gene489	191.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0375453_52	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0375453_52	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0375453_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0375453_52	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0375453_54	K10804	55.8	6.9e-16	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0375453_54	phrog_5240	100.9	1.1e-29	tail fiber protein	tail
eggNOG-mapper	UHGV-0375453_54	1280663.ATVR01000018_gene1258	84.3	0.00000000000000115	GDSL-like Lipase/Acylhydrolase	N/A
Pfam	UHGV-0375453_54	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0375453_54	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0375453_55	K07273	177.3	0	acm; lysozyme	N/A
PHROG	UHGV-0375453_55	phrog_291	140.2	1.90002e-41	endolysin	lysis
UniRef90	UHGV-0375453_55	UniRef90_E2ZES5	296.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0375453_55	748224.HMPREF9436_00154	296.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0375453_55	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0375453_55	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0375453_55	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_57	phrog_15303	71.2	1.3e-20	N/A	unknown function
structural_annotation	UHGV-0375453_59	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0375453_63	phrog_16490	93.7	9.7e-36	N/A	unknown function
eggNOG-mapper	UHGV-0375453_63	1408437.JNJN01000043_gene803	160.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0375453_64	1408437.JNJN01000043_gene802	120.0	1.83e-33	N/A	N/A
eggNOG-mapper	UHGV-0375453_65	1408437.JNJN01000043_gene801	96.3	6.3e-22	N/A	N/A