UHGV-0376800 (vOTU-104316)

Viral Genome: UHGV-0376800

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0376800
vOTU ID	vOTU-104316
Representative Genome?	Yes
Source	mMGE
Original genome ID	k141_51452_round8-12~3521870
Associated BioSample	SAMN11391643
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.43 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.973
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.12
Jumbo phage	No

Genome content
Genome length (bp)	27,569
GC content	31.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	46
CDS density	94%
Average CDS length (bps)	561.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0376800_1	UniRef90_UPI0002E464C5	78.6	8.88e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0376800_1	936375.HMPREF1152_1045	58.5	0.000000000112	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0376800_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0376800_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0376800_1	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0376800_2	K07741	104.9	1.9e-30	antB; anti-repressor protein	N/A
PHROG	UHGV-0376800_2	phrog_130	272.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0376800_2	UniRef90_A0A133YZQ6	315.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0376800_2	1391647.AVSV01000003_gene1780	278.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0376800_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0376800_2	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0376800_2	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0376800_2	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
KOfam	UHGV-0376800_6	K18830	54.5	0.000000000000003	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0376800_6	phrog_8	49.9	0.000000000000075	transcriptional regulator	transcription regulation
UniRef90	UHGV-0376800_6	UniRef90_UPI0004084769	117.0	2.08e-33	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0376800_6	1121947.AUHK01000002_gene909	117.0	3.5e-34	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0376800_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0376800_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_12	phrog_10469	93.4	5.5e-28	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376800_12	UniRef90_UPI001E517B3D	110.0	5.54e-25	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0376800_12	1121947.AUHK01000002_gene919	438.0	0	DnaD domain protein	N/A
COG	UHGV-0376800_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0376800_12	PF08222,NF033788,COG4901	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0376800_14	1121947.AUHK01000002_gene921	222.0	0	N/A	N/A
PHROG	UHGV-0376800_15	phrog_11939	82.6	2.9e-24	N/A	unknown function
UniRef90	UHGV-0376800_15	UniRef90_UPI0007876769	85.1	2.07e-20	N/A	N/A
eggNOG-mapper	UHGV-0376800_15	1121947.AUHK01000002_gene922	130.0	3.44e-39	N/A	N/A
structural_annotation	UHGV-0376800_15	PF13031	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_16	phrog_20891	79.8	3.1e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376800_16	UniRef90_UPI001C6E02B9	127.0	1.15e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0376800_16	242527.Q6V7S8_9CAUD	86.7	6.78e-18	HNH endonuclease	N/A
Pfam	UHGV-0376800_16	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0376800_16	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
dbAPIS	UHGV-0376800_16	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
KOfam	UHGV-0376800_17	K03111	107.4	2.3e-31	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0376800_17	phrog_44	107.9	1.2e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376800_17	UniRef90_UPI000CDE8D5D	196.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0376800_17	883114.HMPREF9709_00052	185.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0376800_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0376800_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0376800_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0376800_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0376800_17	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_19	phrog_190	120.8	1e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376800_19	UniRef90_UPI0004288355	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0376800_19	1121947.AUHK01000002_gene925	228.0	0	N/A	N/A
Pfam	UHGV-0376800_19	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0376800_19	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_23	phrog_36	63.2	5.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0376800_23	UniRef90_A0A4S2ADY9	54.3	0.00000177	N/A	N/A
eggNOG-mapper	UHGV-0376800_23	883114.HMPREF9709_01201	147.0	2.39622e-43	sigma factor activity	N/A
COG	UHGV-0376800_23	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0376800_23	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_24	phrog_1315	43.8	0.0000000000039	N/A	unknown function
structural_annotation	UHGV-0376800_24	TIGR00310	N/A	N/A	N/A	N/A
KOfam	UHGV-0376800_25	K07451	51.3	0.000000000000025	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0376800_25	phrog_119	95.5	6e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376800_25	UniRef90_A0A7V6Y5L9	112.0	4.58e-30	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0376800_25	1347392.CCEZ01000060_gene3258	100.0	3.14e-26	HNH endonuclease	N/A
Pfam	UHGV-0376800_25	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0376800_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0376800_26	phrog_5110	109.6	1.5e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0376800_26	UniRef90_A0A371IJQ7	122.0	6.94e-34	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0376800_26	349161.Dred_2608	112.0	4.12e-31	N/A	N/A
Pfam	UHGV-0376800_26	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0376800_26	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_27	phrog_9	263.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0376800_27	UniRef90_A0A371IJP9	745.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0376800_27	864178.E2ELI2_9CAUD	446.0	0	Phage Terminase	N/A
Pfam	UHGV-0376800_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0376800_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
structural_annotation	UHGV-0376800_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_28	phrog_12	141.6	4.60046e-42	portal protein	head and packaging
UniRef90	UHGV-0376800_28	UniRef90_A0A371IJQ1	389.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0376800_28	926561.KB900623_gene767	314.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0376800_28	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0376800_28	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0376800_28	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0376800_28	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0376800_29	K01358	140.8	1.29998e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0376800_29	phrog_94	223.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0376800_29	UniRef90_A0A371IJS3	241.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0376800_29	1158607.UAU_01031	157.0	2.8026e-45	Clp protease	N/A
Pfam	UHGV-0376800_29	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0376800_29	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0376800_29	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_30	phrog_10	98.0	1.3e-28	major head protein	head and packaging
UniRef90	UHGV-0376800_30	UniRef90_A0A1X1IFB8	355.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0376800_30	1123315.AUIP01000014_gene1951	324.0	0	Phage capsid family	N/A
Pfam	UHGV-0376800_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0376800_30	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0376800_30	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0376800_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_31	phrog_933	58.3	1e-16	N/A	unknown function
UniRef90	UHGV-0376800_31	UniRef90_A0A090HXG2	51.2	0.000000746	HeH domain-containing protein	N/A
PHROG	UHGV-0376800_32	phrog_749	96.9	1.2e-28	N/A	unknown function
UniRef90	UHGV-0376800_32	UniRef90_A0A371IJS1	105.0	1.01e-27	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0376800_32	926561.KB900622_gene644	88.2	1.29e-21	N/A	N/A
PHROG	UHGV-0376800_33	phrog_25	56.1	6e-16	head closure Hc1	connector
UniRef90	UHGV-0376800_33	UniRef90_A0A7Y2L833	69.3	0.000000000000615	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0376800_33	1286171.EAL2_c19600	60.5	0.000000000284	head-tail adaptor	N/A
Pfam	UHGV-0376800_33	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0376800_33	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0376800_33	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0376800_33	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_34	phrog_78	41.9	0.000000000019	tail terminator	connector
UniRef90	UHGV-0376800_34	UniRef90_A0A290GDX2	55.8	0.0000000679	Aminopeptidase	N/A
eggNOG-mapper	UHGV-0376800_34	938278.CAJO01000077_gene1218	61.2	0.000000000112	N/A	N/A
structural_annotation	UHGV-0376800_34	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_35	phrog_5	49.0	0.00000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-0376800_35	UniRef90_A0A366JRC6	88.6	3.09e-20	Bacteriophage HK97-gp10 putative tail-component	N/A
eggNOG-mapper	UHGV-0376800_35	1123298.KB904077_gene463	81.6	2.42e-18	N/A	N/A
Pfam	UHGV-0376800_35	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
PHROG	UHGV-0376800_36	phrog_88	155.4	0	major tail protein	tail
UniRef90	UHGV-0376800_36	UniRef90_UPI00102F83A6	172.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0376800_36	1111134.HMPREF1253_0377	166.0	0	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0376800_36	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0376800_36	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_39	phrog_1533	405.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0376800_39	UniRef90_UPI001F1ED3D4	289.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0376800_39	1235802.C823_01531	287.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0376800_39	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0376800_39	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0376800_39	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0376800_40	PF05709,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_41	phrog_12312	256.4	0	virion structural protein	head and packaging
UniRef90	UHGV-0376800_41	UniRef90_UPI00135712E5	218.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0376800_41	561177.ANHYDRO_01420	242.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0376800_41	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0376800_41	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0376800_41	COG4926	N/A	N/A	Phage-related protein	N/A
Pfam	UHGV-0376800_42	PF07501	N/A	N/A	G5 domain	G5
COG	UHGV-0376800_42	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
Pfam	UHGV-0376800_44	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0376800_44	PF11314,PF14600,PF02839	N/A	N/A	N/A	N/A
PHROG	UHGV-0376800_45	phrog_199	69.7	3.4e-20	holin	lysis
UniRef90	UHGV-0376800_45	UniRef90_UPI001BAFBE40	131.0	3.82e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-0376800_45	1314.HKU360_01610	75.9	0.00000000000000287	Bacteriophage holin family	N/A
Pfam	UHGV-0376800_45	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0376800_45	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0376800_45	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0376800_46	K01448	74.1	2e-21	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0376800_46	phrog_16241	154.5	0	endolysin	lysis
UniRef90	UHGV-0376800_46	UniRef90_UPI00040AB20E	246.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0376800_46	1121947.AUHK01000002_gene950	245.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0376800_46	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0376800_46	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0376800_46	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0376800_46	PF01520,PF08230,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A