UHGV-0377879 (vOTU-045898)

Viral Genome: UHGV-0377879

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0377879
vOTU ID	vOTU-045898
Representative Genome?	Yes
Source	Benler
Original genome ID	OGCO01001767.1
Associated BioSample	SAMEA4370583
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.54
Jumbo phage	No

Genome content
Genome length (bp)	30,936
GC content	60.62%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	94%
Average CDS length (bps)	619.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0377879_1	phrog_5110	55.4	9.4e-16	terminase small subunit	head and packaging
UniRef90	UHGV-0377879_1	UniRef90_UPI00195E8788	105.0	1.23e-26	P27 family phage terminase small subunit	N/A
PHROG	UHGV-0377879_2	phrog_119	73.5	2.8e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0377879_2	UniRef90_G9YSB5	149.0	1.4013e-44	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_2	1235792.C808_00081	83.2	3.98e-19	HNH nucleases	N/A
Pfam	UHGV-0377879_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0377879_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0377879_3	UniRef90_UPI001D014F8E	72.8	0.00000000000000121	cysteine-rich KTR domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_3	1226322.HMPREF1545_00110	67.4	0.0000000000000352	Cysteine-rich KTR	N/A
Pfam	UHGV-0377879_3	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0377879_3	PF14205	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_4	phrog_3584	74.1	2.2e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0377879_4	742738.HMPREF9460_04063	243.0	0	N/A	N/A
structural_annotation	UHGV-0377879_4	PF01446	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_10	K03497	76.3	7e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0377879_10	phrog_27290	335.5	0	N/A	unknown function
UniRef90	UHGV-0377879_10	UniRef90_UPI0003130F10	303.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_10	1007096.BAGW01000033_gene1613	303.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0377879_10	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0377879_10	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0377879_10	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_11	K03496	189.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0377879_11	phrog_164	148.3	5.32493e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0377879_11	UniRef90_UPI000318E277	303.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0377879_11	1007096.BAGW01000033_gene1614	294.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-0377879_11	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0377879_11	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0377879_11	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_13	K02314	260.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0377879_13	phrog_19	226.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0377879_13	UniRef90_A0A1Y3ZTC3	290.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0377879_13	1226322.HMPREF1545_00095	285.0	0	DnaB-like helicase N terminal domain	N/A
Pfam	UHGV-0377879_13	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0377879_13	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0377879_13	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0377879_13	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_14	phrog_270	120.5	2e-35	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0377879_14	UniRef90_UPI001F170B82	184.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_14	742738.HMPREF9460_00851	170.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0377879_14	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0377879_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0377879_14	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0377879_15	PF21327	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_17	K22300	41.6	0.000000000023	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0377879_17	phrog_6499	120.0	1.1e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-0377879_17	UniRef90_G9YL68	140.0	1.5e-39	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0377879_17	742738.HMPREF9460_00847	140.0	1.76e-40	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0377879_17	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0377879_17	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0377879_17	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_18	K22300	59.0	1.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0377879_18	UniRef90_UPI000F0D19B9	54.7	0.0000000217	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_18	345341.KUTG_05563	50.4	0.00000219	TRANSCRIPTIONal	N/A
Pfam	UHGV-0377879_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0377879_18	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0377879_18	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_21	K02342	179.5	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0377879_21	phrog_192	157.3	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0377879_21	UniRef90_UPI001897CA3A	279.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-0377879_21	1437608.BBIA_1844	257.0	0	Exonuclease, DNA polymerase III, epsilon subunit family	N/A
PADLOC	UHGV-0377879_21	cd06127	133.8	1.6e-39	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0377879_21	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0377879_21	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0377879_21	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0377879_21	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0377879_21	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
UniRef90	UHGV-0377879_22	UniRef90_A0A1Y4C9D7	90.1	3.46e-21	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0377879_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0377879_22	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0377879_24	1262449.CP6013_2082	164.0	0	N/A	N/A
structural_annotation	UHGV-0377879_24	PF11631,TIGR03066	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_25	K14059	148.6	7.14662e-44	int; integrase	N/A
PHROG	UHGV-0377879_25	phrog_1	148.1	6.86636e-44	integrase	integration and excision
UniRef90	UHGV-0377879_25	UniRef90_UPI001EDEB0AD	286.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0377879_25	1226322.HMPREF1545_00144	227.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0377879_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0377879_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0377879_25	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_26	K07726	40.8	0.00000000004	K07726; putative transcriptional regulator	N/A
PHROG	UHGV-0377879_26	phrog_25567	57.0	2.9e-16	N/A	unknown function
UniRef90	UHGV-0377879_26	UniRef90_UPI00164AED9E	125.0	6.08e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_26	1235798.C817_04600	95.1	6.99e-24	N/A	N/A
Pfam	UHGV-0377879_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0377879_26	NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_30	K01448	44.6	0.0000000000019	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0377879_30	phrog_435	69.2	8.2e-20	endolysin	lysis
UniRef90	UHGV-0377879_30	UniRef90_A0A810PUG7	202.0	0	SPOR domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_30	742738.HMPREF9460_01415	86.7	2.24e-17	Bacterial SH3 domain	N/A
Pfam	UHGV-0377879_30	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0377879_30	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0377879_30	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0377879_30	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_31	phrog_881	90.2	1.2e-26	holin	lysis
UniRef90	UHGV-0377879_31	UniRef90_UPI00189D3A4F	85.5	1.61e-20	phage holin	N/A
eggNOG-mapper	UHGV-0377879_31	742740.HMPREF9474_02251	82.4	4.96e-20	Putative phage holin Dp-1	N/A
Pfam	UHGV-0377879_31	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0377879_31	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_32	phrog_4105	99.1	2.9e-29	N/A	unknown function
UniRef90	UHGV-0377879_32	UniRef90_A0A8D9UHA9	140.0	3.20001e-41	Holin protein	N/A
eggNOG-mapper	UHGV-0377879_32	742733.HMPREF9469_05011	117.0	5.98e-33	N/A	N/A
eggNOG-mapper	UHGV-0377879_33	1408437.JNJN01000002_gene1389	58.5	0.00000187	N/A	N/A
structural_annotation	UHGV-0377879_33	PF10651,TIGR02059	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_34	phrog_1067	271.9	0	minor head protein	head and packaging
UniRef90	UHGV-0377879_34	UniRef90_A0A316NPB5	390.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_34	1123263.AUKY01000068_gene489	301.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0377879_34	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0377879_34	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0377879_34	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0377879_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_35	phrog_33	58.3	2.2e-16	distal tail protein Dit	tail
UniRef90	UHGV-0377879_35	UniRef90_A0A173Z1X4	176.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0377879_35	585198.HMPREF0574_0620	61.6	0.0000000125	phage tail	N/A
COG	UHGV-0377879_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0377879_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_36	phrog_6900	251.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0377879_36	UniRef90_A0A373CK98	298.0	0	PblA (Fragment)	N/A
eggNOG-mapper	UHGV-0377879_36	1216932.CM240_0625	320.0	0	tape measure	N/A
COG	UHGV-0377879_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0377879_36	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_39	phrog_88	93.3	2.9e-27	major tail protein	tail
UniRef90	UHGV-0377879_39	UniRef90_A0A1C6CIL7	129.0	4.57e-33	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0377879_39	33035.JPJF01000039_gene278	72.0	0.000000000000788	N/A	N/A
NCBIFam	UHGV-0377879_39	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0377879_39	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_40	phrog_5	48.1	0.00000000000025	tail completion or Neck1 protein	connector
UniRef90	UHGV-0377879_40	UniRef90_A0A1C6FG30	136.0	7.36e-38	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0377879_40	908340.HMPREF9406_2573	133.0	1.68e-37	N/A	N/A
structural_annotation	UHGV-0377879_40	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0377879_41	999413.HMPREF1094_02005	83.6	2.59e-19	N/A	N/A
structural_annotation	UHGV-0377879_41	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_42	phrog_19734	115.5	3.4e-34	N/A	unknown function
UniRef90	UHGV-0377879_42	UniRef90_A0A6I7GNS7	120.0	1.02e-32	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0377879_42	349161.Dred_2602	81.6	2.51e-18	N/A	N/A
structural_annotation	UHGV-0377879_42	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_43	phrog_749	65.3	9.1e-19	N/A	unknown function
PHROG	UHGV-0377879_44	phrog_10	156.8	0	major head protein	head and packaging
UniRef90	UHGV-0377879_44	UniRef90_G9YSC0	678.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0377879_44	1235792.C808_00086	425.0	0	Phage capsid family	N/A
Pfam	UHGV-0377879_44	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0377879_44	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0377879_44	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0377879_44	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0377879_44	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0377879_45	K01358	132.8	3.9e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0377879_45	phrog_94	248.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0377879_45	UniRef90_A0A1Y4BT12	341.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0377879_45	349161.Dred_2605	305.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0377879_45	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0377879_45	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0377879_45	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_46	phrog_12	121.3	3.6e-36	portal protein	head and packaging
UniRef90	UHGV-0377879_46	UniRef90_G9YSB8	508.0	0	Phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0377879_46	610130.Closa_0742	293.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0377879_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0377879_46	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0377879_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0377879_46	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0377879_47	phrog_9	241.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0377879_47	UniRef90_A0A6I7GGF0	912.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0377879_47	1235792.C808_00083	594.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0377879_47	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0377879_47	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0377879_47	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0377879_47	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A