UHGV-0378316 (vOTU-051372)

Viral Genome: UHGV-0378316

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0378316
vOTU ID	vOTU-051372
Representative Genome?	Yes
Source	mMGE
Original genome ID	k99_123716_round8-12~1085678
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9723
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.78
Jumbo phage	No

Genome content
Genome length (bp)	41,905
GC content	39.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	91%
Average CDS length (bps)	734.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0378316_1	PF10651,PF01664,NF032891	N/A	N/A	N/A	N/A
KOfam	UHGV-0378316_2	K20478	144.7	4.62428e-44	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0378316_2	phrog_22978	106.5	8.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0378316_2	748224.HMPREF9436_01406	236.0	0	N/A	N/A
eggNOG-mapper	UHGV-0378316_3	1410650.JHWL01000003_gene2815	87.8	5.85e-16	N/A	N/A
eggNOG-mapper	UHGV-0378316_5	411460.RUMTOR_00484	78.6	0.00000000000549	Prophage endopeptidase tail	N/A
COG	UHGV-0378316_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0378316_5	PF07902	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_6	phrog_511	244.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0378316_6	1410650.JHWL01000003_gene2827	360.0	0	N/A	N/A
structural_annotation	UHGV-0378316_6	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_7	phrog_12105	112.5	2.8e-33	N/A	unknown function
PHROG	UHGV-0378316_9	phrog_1357	199.5	0	major head protein	head and packaging
UniRef90	UHGV-0378316_9	UniRef90_A0A6L5YGG5	397.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0378316_9	1410650.JHWL01000003_gene2830	298.0	0	N/A	N/A
Pfam	UHGV-0378316_9	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0378316_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0378316_9	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_10	phrog_13908	175.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0378316_10	1410650.JHWL01000003_gene2831	107.0	7.19e-24	N/A	N/A
KOfam	UHGV-0378316_11	K07584	69.9	4.7e-20	N/A	N/A
PHROG	UHGV-0378316_11	phrog_4478	59.4	2.3e-17	peptidase	other
UniRef90	UHGV-0378316_11	UniRef90_A0A841YBI3	66.6	0.00000000000484	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0378316_11	1227360.C176_15712	62.0	0.000000000061	Cysteine protease Prp	N/A
Pfam	UHGV-0378316_11	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0378316_11	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0378316_11	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_12	phrog_156	291.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0378316_12	1410650.JHWL01000003_gene2833	466.0	0	N/A	N/A
structural_annotation	UHGV-0378316_12	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0378316_13	K06909	151.9	5.60519e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0378316_13	phrog_979	130.2	7.80001e-40	terminase large subunit	head and packaging
UniRef90	UHGV-0378316_13	UniRef90_A0A810Q5R0	559.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0378316_13	1410650.JHWL01000003_gene2834	558.0	0	N/A	N/A
Pfam	UHGV-0378316_13	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0378316_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0378316_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0378316_16	UniRef90_A0A412ULX9	73.9	3.07e-16	XRE family transcriptional regulator	N/A
Pfam	UHGV-0378316_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0378316_16	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0378316_16	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
KOfam	UHGV-0378316_17	K00571	99.6	4.7e-29	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0378316_17	phrog_67	98.4	9.5e-29	DNA methyltransferase	other
UniRef90	UHGV-0378316_17	UniRef90_A0A412L7Z0	105.0	1.89e-28	Site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0378316_17	1125725.HMPREF1325_1835	92.4	3.81e-22	DNA methylase	N/A
PADLOC	UHGV-0378316_17	MTase_II_00157	99.1	1.1e-28	Type II methyltransferase	RM
Pfam	UHGV-0378316_17	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0378316_17	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0378316_17	PF13679,NF000058,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-0378316_18	K07273	199.5	0	acm; lysozyme	N/A
PHROG	UHGV-0378316_18	phrog_291	168.7	0	endolysin	lysis
UniRef90	UHGV-0378316_18	UniRef90_A0A373KPS8	541.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0378316_18	1120933.ATUY01000002_gene158	167.0	0	lysozyme activity	N/A
Pfam	UHGV-0378316_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0378316_18	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0378316_18	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0378316_18	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_20	phrog_443	64.2	3.6e-18	holin	lysis
UniRef90	UHGV-0378316_20	UniRef90_R6R2Q3	88.6	9.06e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0378316_20	1235797.C816_04172	81.3	1.23e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0378316_20	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0378316_20	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_21	phrog_1863	66.2	4.6e-20	N/A	unknown function
UniRef90	UHGV-0378316_21	UniRef90_A0A2K9NYV1	65.9	0.00000000000212	Holin	N/A
eggNOG-mapper	UHGV-0378316_21	428125.CLOLEP_01781	71.6	0.00000000000000165	N/A	N/A
KOfam	UHGV-0378316_22	K01520	137.5	1.10001e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0378316_22	phrog_135	132.4	2.4e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0378316_22	UniRef90_UPI00164A78A3	166.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0378316_22	1282887.AUJG01000016_gene1113	145.0	7.83046e-42	N/A	N/A
Pfam	UHGV-0378316_22	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0378316_22	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0378316_22	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0378316_22	PF00692,MF_00116,NF001862,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_23	phrog_2118	121.8	6.2e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0378316_23	UniRef90_A0A373KMT6	206.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0378316_23	610130.Closa_0730	172.0	0	HNH endonuclease	N/A
Pfam	UHGV-0378316_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0378316_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0378316_23	COG1403	N/A	N/A	N/A	N/A
Pfam	UHGV-0378316_24	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
KOfam	UHGV-0378316_26	K22300	54.5	0.0000000000000028	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0378316_26	phrog_8	61.0	3e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0378316_26	UniRef90_A0A374N9T4	105.0	1.21e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0378316_26	935845.JADQ01000015_gene3206	79.3	4.55e-18	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0378316_26	retron_type_VI_hth_cluster2_1	40.9	0.00000000006	N/A	Retron
Pfam	UHGV-0378316_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0378316_26	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0378316_26	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0378316_27	K00390	99.0	5.1e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0378316_27	phrog_424	125.4	4.3e-37	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0378316_27	UniRef90_UPI001C034617	590.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0378316_27	1408437.JNJN01000032_gene2312	342.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0378316_27	BrxP_00001	81.3	8.1e-24	BrxP	BREX
Pfam	UHGV-0378316_27	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0378316_27	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0378316_27	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_28	phrog_10714	44.4	0.0000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0378316_28	742723.HMPREF9477_00922	67.0	0.000000000000164	N/A	N/A
PHROG	UHGV-0378316_30	phrog_301	78.2	1.2e-22	secreted protein	other
UniRef90	UHGV-0378316_30	UniRef90_UPI00112B19FF	100.0	6.86e-25	N/A	N/A
eggNOG-mapper	UHGV-0378316_30	397290.C810_05192	106.0	4.41e-28	N/A	N/A
Pfam	UHGV-0378316_30	PF07509	N/A	N/A	N/A	DUF1523
structural_annotation	UHGV-0378316_30	PF07509,MF_00720,NF038397,COG3390	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0378316_32	PF05129	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_35	phrog_4433	75.2	1.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0378316_35	886882.PPSC2_p0363	105.0	2.72e-24	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0378316_35	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0378316_37	PF01381,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_38	phrog_190	119.9	2.1e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0378316_38	UniRef90_UPI001C0F5697	101.0	2.65e-25	N/A	N/A
eggNOG-mapper	UHGV-0378316_38	1121947.AUHK01000002_gene925	83.2	5.41e-19	N/A	N/A
Pfam	UHGV-0378316_38	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0378316_38	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_40	phrog_428	147.5	1.09301e-43	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0378316_40	UniRef90_UPI001C219B18	90.1	1.26e-17	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0378316_40	1295642.H839_08149	111.0	7.53e-26	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0378316_40	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0378316_40	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0378316_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0378316_41	K03111	71.3	2.4e-20	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0378316_41	phrog_44	68.6	1.2e-19	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0378316_41	UniRef90_A0A660TME1	72.0	0.000000000000182	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0378316_41	760011.Spico_0701	70.9	0.0000000000000835	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0378316_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0378316_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0378316_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0378316_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_42	phrog_155	161.1	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0378316_42	UniRef90_UPI000F63C62A	189.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0378316_42	97138.C820_00777	192.0	0	ERF superfamily	N/A
Pfam	UHGV-0378316_42	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0378316_42	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0378316_43	phrog_253	109.9	2.4e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0378316_43	UniRef90_UPI000D2FBDEF	80.9	2.67e-16	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0378316_43	1256908.HMPREF0373_00657	69.3	0.0000000000013	Siphovirus Gp157	N/A
Pfam	UHGV-0378316_43	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0378316_43	PF05565,NF002139	N/A	N/A	N/A	N/A
KOfam	UHGV-0378316_48	K18830	53.9	0.0000000000000043	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0378316_48	phrog_8	47.0	0.00000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-0378316_48	UniRef90_UPI001C0F4E36	107.0	3.24e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0378316_48	411461.DORFOR_01130	100.0	1.02e-25	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0378316_48	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0378316_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0378316_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0378316_51	K14059	209.4	0	int; integrase	N/A
PHROG	UHGV-0378316_51	phrog_1	212.2	0	integrase	integration and excision
UniRef90	UHGV-0378316_51	UniRef90_UPI0008345DF0	260.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0378316_51	693746.OBV_01970	178.0	0	Phage integrase family	N/A
Pfam	UHGV-0378316_51	PF02899	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
Pfam	UHGV-0378316_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0378316_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0378316_51	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A