UHGV-0380268 (vOTU-051403)

Viral Genome: UHGV-0380268

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0380268
vOTU ID	vOTU-051403
Representative Genome?	Yes
Source	mMGE
Original genome ID	SRR3147687_119_79488_round8-12~1984841
Associated BioSample	SAMD00164914
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.76
Jumbo phage	No

Genome content
Genome length (bp)	35,735
GC content	45.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	93%
Average CDS length (bps)	693.44
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0380268_1	phrog_38135	73.7	2.6e-21	N/A	unknown function
UniRef90	UHGV-0380268_1	UniRef90_A0A1H0CW05	73.2	0.0000000000000244	N/A	N/A
eggNOG-mapper	UHGV-0380268_1	398511.BpOF4_17590	80.5	4.21e-16	N/A	N/A
Pfam	UHGV-0380268_1	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0380268_1	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
KOfam	UHGV-0380268_3	K18830	43.5	0.0000000000068	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0380268_3	UniRef90_A0A2T3F6C0	114.0	2.73e-30	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0380268_3	1280698.AUJS01000007_gene1002	114.0	1.02e-30	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0380268_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0380268_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_5	phrog_36464	40.3	0.000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0380268_5	1235798.C817_05488	56.6	0.00000000276	N/A	N/A
PHROG	UHGV-0380268_8	phrog_3584	155.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0380268_8	411459.RUMOBE_00953	298.0	0	N/A	N/A
structural_annotation	UHGV-0380268_8	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0380268_9	K03469	41.2	0.000000000026	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0380268_9	phrog_531	42.3	0.000000000012	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380268_9	UniRef90_A0A373MZB7	288.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0380268_9	1268635.Loa_01114	55.1	0.000000131	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0380268_9	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0380268_9	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0380268_9	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0380268_10	1235792.C808_00065	228.0	0	N/A	N/A
PHROG	UHGV-0380268_11	phrog_8470	325.8	0	N/A	unknown function
UniRef90	UHGV-0380268_11	UniRef90_UPI001D086F83	842.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0380268_11	1235792.C808_03081	908.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0380268_11	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0380268_11	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_12	phrog_15077	112.5	7e-33	N/A	unknown function
UniRef90	UHGV-0380268_12	UniRef90_A5ZPN2	162.0	5.22965e-42	N/A	N/A
eggNOG-mapper	UHGV-0380268_12	97139.C824_05986	224.0	0	N/A	N/A
structural_annotation	UHGV-0380268_12	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_13	phrog_3502	40.2	0.000000000069	N/A	unknown function
UniRef90	UHGV-0380268_13	UniRef90_A0A373N0F2	165.0	0	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0380268_13	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0380268_13	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0380268_13	PF01726,MF_00732,NF041852,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0380268_14	K03111	132.3	5.8e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0380268_14	phrog_44	131.2	7.6e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380268_14	UniRef90_A0A373N003	275.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0380268_14	1256908.HMPREF0373_03133	199.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0380268_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0380268_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0380268_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0380268_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0380268_14	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_15	phrog_7566	96.1	1.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0380268_15	411459.RUMOBE_00948	94.7	2.22e-23	N/A	N/A
structural_annotation	UHGV-0380268_16	PF02796,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_18	phrog_16351	45.6	0.0000000000011	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380268_18	UniRef90_D7GWI5	65.9	0.0000000000206	N/A	N/A
eggNOG-mapper	UHGV-0380268_18	658655.HMPREF0988_02575	96.3	2.67e-24	N/A	N/A
structural_annotation	UHGV-0380268_20	PF10627	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_21	phrog_36	70.4	2.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0380268_21	UniRef90_A0A373MZQ3	250.0	0	N/A	N/A
eggNOG-mapper	UHGV-0380268_21	1235792.C808_03069	103.0	2.38e-26	sigma factor activity	N/A
COG	UHGV-0380268_21	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0380268_21	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0380268_22	K07451	45.6	0.0000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0380268_22	phrog_119	76.8	2.9e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0380268_22	UniRef90_A0A373N028	211.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0380268_22	1232452.BAIB02000007_gene1631	95.9	3.2e-24	HNH nucleases	N/A
Pfam	UHGV-0380268_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0380268_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0380268_23	phrog_5110	95.8	2.8e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0380268_23	UniRef90_A0A371IJQ7	87.8	2.21e-20	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0380268_23	349161.Dred_2608	80.1	3.2e-18	N/A	N/A
Pfam	UHGV-0380268_23	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0380268_23	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_24	phrog_9	269.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0380268_24	UniRef90_A0A373MZZ0	1100.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0380268_24	1232452.BAIB02000007_gene1629	567.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0380268_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0380268_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0380268_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0380268_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_25	phrog_12	78.5	4.5e-23	portal protein	head and packaging
UniRef90	UHGV-0380268_25	UniRef90_A0A416ZRW1	759.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0380268_25	1232452.BAIB02000007_gene1627	358.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0380268_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0380268_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0380268_25	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0380268_26	K01358	107.0	2.4e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0380268_26	phrog_94	185.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0380268_26	UniRef90_A0A416ZS51	503.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0380268_26	1235792.C808_00085	223.0	0	Clp protease	N/A
Pfam	UHGV-0380268_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0380268_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0380268_26	PF00574,MF_00444,NF011089,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_27	phrog_10	77.0	2.1e-22	major head protein	head and packaging
UniRef90	UHGV-0380268_27	UniRef90_A0A373N0L7	737.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0380268_27	1232452.BAIB02000007_gene1625	511.0	0	Phage capsid family	N/A
Pfam	UHGV-0380268_27	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0380268_27	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0380268_27	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0380268_27	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_28	phrog_749	40.8	0.000000000038	N/A	unknown function
UniRef90	UHGV-0380268_29	UniRef90_UPI00189B1559	139.0	1.20999e-40	phage head closure protein	N/A
NCBIFam	UHGV-0380268_29	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0380268_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_30	phrog_78	44.9	0.0000000000022	tail terminator	connector
structural_annotation	UHGV-0380268_30	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_31	phrog_5	44.4	0.0000000000043	tail completion or Neck1 protein	connector
UniRef90	UHGV-0380268_31	UniRef90_D4M595	109.0	1.53e-28	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0380268_31	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_32	phrog_88	73.0	4.7e-21	major tail protein	tail
UniRef90	UHGV-0380268_32	UniRef90_A0A416ZS16	350.0	0	Phage tail protein	N/A
NCBIFam	UHGV-0380268_32	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0380268_32	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0380268_34	K11499	44.2	0.00000000000047	CENPF; centromere protein F	N/A
PHROG	UHGV-0380268_34	phrog_1533	359.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0380268_34	UniRef90_A0A373N0I0	1244.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0380268_34	742740.HMPREF9474_01203	458.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0380268_34	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0380268_34	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0380268_34	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0380268_34	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_35	phrog_33	84.6	2e-24	distal tail protein Dit	tail
UniRef90	UHGV-0380268_35	UniRef90_A0A844KEE5	150.0	4.08997e-41	Phage tail protein	N/A
eggNOG-mapper	UHGV-0380268_35	1232452.BAIB02000007_gene1615	152.0	8.46384e-43	phage tail	N/A
Pfam	UHGV-0380268_35	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0380268_35	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0380268_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0380268_35	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_36	phrog_1067	290.4	0	minor head protein	head and packaging
UniRef90	UHGV-0380268_36	UniRef90_A0A373N0D4	1186.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0380268_36	33035.JPJF01000023_gene3230	504.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0380268_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0380268_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0380268_36	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0380268_36	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0380268_37	K21471	44.2	0.0000000000038	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0380268_37	phrog_14030	156.4	0	N/A	unknown function
UniRef90	UHGV-0380268_37	UniRef90_UPI0013140944	659.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0380268_37	33035.JPJF01000093_gene2240	279.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0380268_37	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0380268_37	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0380268_37	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0380268_37	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_38	phrog_24267	59.4	1.6e-17	N/A	unknown function
UniRef90	UHGV-0380268_38	UniRef90_R5HGH3	58.2	0.0000014	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0380268_38	526218.Sterm_2930	79.3	0.0000000000000435	N/A	N/A
PHROG	UHGV-0380268_39	phrog_19695	70.3	4.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0380268_39	411462.DORLON_00772	85.9	1.77e-20	N/A	N/A
structural_annotation	UHGV-0380268_39	PF19714	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_40	phrog_28673	422.8	0	tail protein	tail
eggNOG-mapper	UHGV-0380268_40	1540090.A0A0A0RS40_9CAUD	323.0	0	N/A	N/A
KOfam	UHGV-0380268_41	K03733	86.7	3.9e-25	xerC; integrase/recombinase XerC	N/A
PHROG	UHGV-0380268_41	phrog_1	60.3	4e-17	integrase	integration and excision
UniRef90	UHGV-0380268_41	UniRef90_A0A355TMN8	160.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0380268_41	545696.HOLDEFILI_00734	114.0	4.61e-29	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0380268_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0380268_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0380268_41	PF00589,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_42	phrog_199	61.4	1.2e-17	holin	lysis
UniRef90	UHGV-0380268_42	UniRef90_A0A373MZ88	287.0	0	Holin	N/A
eggNOG-mapper	UHGV-0380268_42	411460.RUMTOR_02100	230.0	0	N/A	N/A
Pfam	UHGV-0380268_42	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0380268_42	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0380268_42	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_44	phrog_14030	149.2	1.54143e-44	N/A	unknown function
UniRef90	UHGV-0380268_44	UniRef90_A0A174JX56	1024.0	0	Spore cortex-lytic enzyme	N/A
eggNOG-mapper	UHGV-0380268_44	742741.HMPREF9475_00446	227.0	0	N/A	N/A
Pfam	UHGV-0380268_44	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0380268_44	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0380268_44	PF18013,PF01471,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0380268_46	phrog_13890	58.9	3.5e-17	N/A	unknown function
UniRef90	UHGV-0380268_46	UniRef90_A0A1Q9J4Y8	103.0	1.81e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0380268_46	411468.CLOSCI_01452	56.2	0.000000107	N/A	N/A
KOfam	UHGV-0380268_47	K14059	160.9	0	int; integrase	N/A
PHROG	UHGV-0380268_47	phrog_1	153.8	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0380268_47	UniRef90_A0A373N009	704.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0380268_47	33035.JPJF01000071_gene4457	401.0	0	Phage integrase family	N/A
Pfam	UHGV-0380268_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0380268_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0380268_47	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0380268_48	K11062	40.4	0.000000000028	entD; probable enterotoxin D	N/A
PHROG	UHGV-0380268_48	phrog_14556	49.0	0.000000000000067	N/A	unknown function
UniRef90	UHGV-0380268_48	UniRef90_A0A416ZS49	245.0	0	N/A	N/A
eggNOG-mapper	UHGV-0380268_48	1280686.AUKE01000005_gene2337	84.0	8.42e-18	N/A	N/A
Pfam	UHGV-0380268_48	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3