UHGV-0381880 (vOTU-006089)

Viral Genome: UHGV-0381880

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0381880
vOTU ID	vOTU-006089
Representative Genome?	Yes
Source	mMGE
Original genome ID	k99_171934_round1256~3431347
Associated BioSample	SAMEA4812184
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9824
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.5
Jumbo phage	No

Genome content
Genome length (bp)	40,755
GC content	53.92%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	92%
Average CDS length (bps)	538.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0381880_2	1226322.HMPREF1545_00079	110.0	6.91e-30	N/A	N/A
KOfam	UHGV-0381880_3	K14059	132.8	4.3e-39	int; integrase	N/A
PHROG	UHGV-0381880_3	phrog_1	144.8	6.69821e-43	integrase	integration and excision
UniRef90	UHGV-0381880_3	UniRef90_UPI00195CC1EE	381.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0381880_3	1235835.C814_03141	195.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0381880_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0381880_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0381880_3	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0381880_4	UniRef90_A0A8D9UHA6	86.7	9.02e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-0381880_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0381880_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0381880_4	PF12844	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381880_6	1280682.AUKA01000018_gene2337	143.0	4.46e-38	N/A	N/A
Pfam	UHGV-0381880_6	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0381880_6	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_7	phrog_8	47.3	0.00000000000049	transcriptional regulator	transcription regulation
UniRef90	UHGV-0381880_7	UniRef90_UPI001E54DE4F	80.9	1.28e-17	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0381880_7	1378168.N510_01712	66.6	0.0000000000113	N/A	N/A
Pfam	UHGV-0381880_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0381880_7	PF12844,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0381880_8	UniRef90_A0A1C7FQD9	88.2	1.63e-21	Transcriptional regulator	N/A
Pfam	UHGV-0381880_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0381880_8	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381880_9	1235835.C814_03153	74.7	5.02e-17	N/A	N/A
structural_annotation	UHGV-0381880_9	PF09035,NF040990	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381880_10	760568.Desku_0919	115.0	2.48e-29	N/A	N/A
structural_annotation	UHGV-0381880_10	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0381880_11	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-0381880_15	K06236	42.9	0.0000000000026	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0381880_15	phrog_4433	249.0	0	N/A	unknown function
UniRef90	UHGV-0381880_15	UniRef90_A0A1V5NWB8	65.5	0.0000000103	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0381880_15	106648.BBLJ01000054_gene3814	101.0	5.91e-24	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-0381880_15	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0381880_15	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0381880_15	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_16	phrog_434	328.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381880_16	UniRef90_A0A1Y4W4B5	421.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0381880_16	428125.CLOLEP_01823	341.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0381880_16	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0381880_16	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0381880_16	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0381880_16	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0381880_17	K07455	280.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0381880_17	phrog_148	270.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381880_17	UniRef90_A0A1Y4W4R3	385.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0381880_17	1226322.HMPREF1545_00015	343.0	0	RecT family	N/A
Pfam	UHGV-0381880_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0381880_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0381880_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0381880_17	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0381880_18	K03111	149.5	3.22299e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0381880_18	phrog_44	149.8	1.26117e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381880_18	UniRef90_R6LLA3	197.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0381880_18	1007096.BAGW01000007_gene1922	188.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0381880_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0381880_18	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0381880_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0381880_18	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0381880_18	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_19	phrog_16304	56.5	5.2e-16	N/A	unknown function
UniRef90	UHGV-0381880_19	UniRef90_A0A3D3Y5P0	222.0	0	N/A	N/A
eggNOG-mapper	UHGV-0381880_19	1410650.JHWL01000003_gene2848	55.5	0.00000313	N/A	N/A
Pfam	UHGV-0381880_19	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0381880_19	PF19808	N/A	N/A	N/A	N/A
Pfam	UHGV-0381880_21	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0381880_21	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_22	phrog_1384	121.8	4.8e-36	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0381880_22	665956.HMPREF1032_03086	282.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0381880_22	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_23	phrog_3136	138.5	1.6e-41	N/A	unknown function
UniRef90	UHGV-0381880_23	UniRef90_UPI001C02A61B	171.0	0	ASCH domain-containing protein	N/A
Pfam	UHGV-0381880_23	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-0381880_23	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0381880_23	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_24	phrog_38832	63.7	4.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0381880_24	445972.ANACOL_00165	62.0	0.00000000237	N/A	N/A
PHROG	UHGV-0381880_30	phrog_1770	58.9	1e-16	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0381880_30	536233.CLO_1822	153.0	4.2039e-45	N/A	N/A
structural_annotation	UHGV-0381880_30	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381880_34	742738.HMPREF9460_02503	90.9	1.37e-22	N/A	N/A
structural_annotation	UHGV-0381880_34	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0381880_35	K07319	120.1	2e-35	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0381880_35	phrog_498	439.3	0	DNA methyltransferase	other
UniRef90	UHGV-0381880_35	UniRef90_A0A810Q3Z7	446.0	0	N6_N4_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0381880_35	1423758.BN55_01455	421.0	0	DNA methylase	N/A
PADLOC	UHGV-0381880_35	MTase_II_00015	232.4	0	Type II methyltransferase	RM
Pfam	UHGV-0381880_35	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0381880_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0381880_35	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0381880_35	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-0381880_37	K06909	103.3	2.9e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0381880_37	phrog_10250	118.0	6.8e-35	N/A	unknown function
UniRef90	UHGV-0381880_37	UniRef90_A0A1I3QR69	467.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0381880_37	748224.HMPREF9436_03341	337.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0381880_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0381880_37	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0381880_37	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0381880_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0381880_37	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_38	phrog_64	157.1	0	portal protein	head and packaging
UniRef90	UHGV-0381880_38	UniRef90_UPI001AA0B7FF	497.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0381880_38	673376.F2VHW1_9CAUD	220.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0381880_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0381880_38	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0381880_39	PF10651,NF038186	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381880_40	411471.SUBVAR_06929	234.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0381880_40	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0381880_41	phrog_18805	60.9	9.3e-36	N/A	unknown function
Pfam	UHGV-0381880_41	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-0381880_41	PF13306	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_42	phrog_595	122.9	3.6e-36	head maturation protease	head and packaging
UniRef90	UHGV-0381880_42	UniRef90_A0A810PSD3	445.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0381880_42	1504822.CCNO01000013_gene286	216.0	0	cell adhesion	N/A
Pfam	UHGV-0381880_42	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0381880_42	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0381880_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0381880_42	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_43	phrog_5	82.8	5.6e-24	tail completion or Neck1 protein	connector
UniRef90	UHGV-0381880_43	UniRef90_A0A7X5E1T2	185.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0381880_43	1443125.Z962_05620	90.1	2.28e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0381880_43	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0381880_43	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0381880_43	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_44	phrog_194	46.5	0.00000000000065	head scaffolding protein	head and packaging
UniRef90	UHGV-0381880_44	UniRef90_A0A6B9SU02	150.0	1.3999e-42	Fibronectin autolysin	N/A
eggNOG-mapper	UHGV-0381880_44	476272.RUMHYD_01775	57.8	0.000000125	COG NOG36366 non supervised orthologous group	N/A
structural_annotation	UHGV-0381880_44	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_45	phrog_544	131.3	8.3e-39	major head protein	head and packaging
UniRef90	UHGV-0381880_45	UniRef90_A0A1C6B5R0	593.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0381880_45	1232453.BAIF02000011_gene3359	362.0	0	N/A	N/A
Pfam	UHGV-0381880_45	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0381880_45	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_47	phrog_17977	79.1	3.9e-23	N/A	unknown function
UniRef90	UHGV-0381880_47	UniRef90_UPI00141211AB	114.0	9.97e-31	head-tail adaptor protein	N/A
structural_annotation	UHGV-0381880_47	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0381880_48	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_49	phrog_885	75.2	7.1e-22	major tail protein	tail
UniRef90	UHGV-0381880_49	UniRef90_A0A843J9F0	209.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0381880_49	1504822.CCNO01000012_gene492	246.0	0	N/A	N/A
structural_annotation	UHGV-0381880_49	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_50	phrog_18646	54.5	0.0000000000000021	N/A	unknown function
PHROG	UHGV-0381880_52	phrog_6900	273.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0381880_52	1123312.KB904569_gene357	304.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0381880_52	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0381880_52	MF_04138,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0381880_53	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_54	phrog_13879	197.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0381880_54	1122919.KB905559_gene1344	164.0	4.28937e-42	N/A	N/A
structural_annotation	UHGV-0381880_54	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_55	phrog_18725	92.9	3.2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0381880_55	693746.OBV_18220	134.0	5.28e-38	N/A	N/A
Pfam	UHGV-0381880_56	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-0381880_56	PF20055,MF_03008,NF010730,COG3940	N/A	N/A	N/A	N/A
Pfam	UHGV-0381880_57	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
structural_annotation	UHGV-0381880_57	PF07484	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_60	phrog_6918	96.0	2.3e-28	holin	lysis
UniRef90	UHGV-0381880_60	UniRef90_A0A316QCY7	104.0	4.26e-27	Holin	N/A
eggNOG-mapper	UHGV-0381880_60	1297617.JPJD01000020_gene301	103.0	2.98e-27	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0381880_60	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0381880_60	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_61	phrog_14030	144.9	4.69435e-43	N/A	unknown function
UniRef90	UHGV-0381880_61	UniRef90_R6LL81	246.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0381880_61	1121866.AUGK01000003_gene1444	88.2	2.85e-17	amidase activity	N/A
COG	UHGV-0381880_61	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0381880_62	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381880_64	1160721.RBI_I00206	56.2	0.00000000057	N/A	N/A
structural_annotation	UHGV-0381880_64	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0381880_65	phrog_3754	95.0	7.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0381880_65	476272.RUMHYD_01764	163.0	0	N/A	N/A
PHROG	UHGV-0381880_66	phrog_21718	95.3	4.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0381880_66	397290.C810_05210	58.2	0.0000000233	N/A	N/A
PHROG	UHGV-0381880_67	phrog_22984	75.5	1.1e-22	N/A	unknown function
PHROG	UHGV-0381880_68	phrog_16490	126.4	4.6e-38	N/A	unknown function
eggNOG-mapper	UHGV-0381880_68	397290.C810_01328	113.0	4.58e-27	N/A	N/A
PHROG	UHGV-0381880_69	phrog_20016	196.8	0	N/A	unknown function
UniRef90	UHGV-0381880_69	UniRef90_A0A285PT46	192.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0381880_69	1226322.HMPREF1545_00077	174.0	0	N/A	N/A
structural_annotation	UHGV-0381880_69	PF18573,NF033147	N/A	N/A	N/A	N/A