UHGV-0381918 (vOTU-014906)

Viral Genome: UHGV-0381918

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0381918
vOTU ID	vOTU-014906
Representative Genome?	Yes
Source	mMGE
Original genome ID	DRR127700_141_99813_round13~8605090
Associated BioSample	SAMD00002752
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	53 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.74
Jumbo phage	No

Genome content
Genome length (bp)	33,741
GC content	48.20%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	47
CDS density	94%
Average CDS length (bps)	678.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0381918_1	K01448	136.0	3.09999e-40	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0381918_1	phrog_435	123.9	1.7e-36	endolysin	lysis
UniRef90	UHGV-0381918_1	UniRef90_A0A1V5TUC9	133.0	3.29e-35	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0381918_1	1203606.HMPREF1526_00962	117.0	3.24e-30	Ami_3	N/A
Pfam	UHGV-0381918_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0381918_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0381918_1	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0381918_2	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_3	phrog_27545	90.1	1.9e-26	N/A	unknown function
UniRef90	UHGV-0381918_3	UniRef90_A0A252F2F2	57.0	0.000000288	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0381918_3	1203606.HMPREF1526_00344	129.0	1.07e-35	N/A	N/A
structural_annotation	UHGV-0381918_5	PF07703,TIGR02657,COG2372	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381918_6	33035.JPJF01000023_gene3226	54.7	0.0000000164	N/A	N/A
Pfam	UHGV-0381918_6	PF13754	N/A	N/A	N/A	Big_3_4
structural_annotation	UHGV-0381918_6	PF13754	N/A	N/A	N/A	N/A
KOfam	UHGV-0381918_7	K13276	47.1	0.00000000000012	bpr; bacillopeptidase F [EC:3.4.21.-]	N/A
PHROG	UHGV-0381918_7	phrog_11157	148.7	1.26117e-44	N/A	unknown function
UniRef90	UHGV-0381918_7	UniRef90_UPI000681F570	212.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0381918_7	476272.RUMHYD_02867	226.0	0	N/A	N/A
Pfam	UHGV-0381918_7	PF17957	N/A	N/A	Bacterial Ig domain	Big_7
Pfam	UHGV-0381918_7	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0381918_7	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0381918_7	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_8	phrog_18593	40.0	0.000000000069	N/A	unknown function
UniRef90	UHGV-0381918_8	UniRef90_A0A845R3S5	90.1	9.37e-20	Chitinase	N/A
eggNOG-mapper	UHGV-0381918_8	1226322.HMPREF1545_04028	85.1	4.43e-19	N/A	N/A
structural_annotation	UHGV-0381918_8	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_10	phrog_6616	385.6	0	tail protein	tail
eggNOG-mapper	UHGV-0381918_10	445971.ANASTE_00088	126.0	6.55e-27	N/A	N/A
structural_annotation	UHGV-0381918_10	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_11	phrog_1194	87.4	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0381918_11	1400520.LFAB_05290	68.2	0.000000000000492	N/A	N/A
structural_annotation	UHGV-0381918_11	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_12	phrog_1599	127.1	1.1e-37	N/A	unknown function
UniRef90	UHGV-0381918_12	UniRef90_A0A1H8AX48	222.0	0	Abasic site processing protein	N/A
eggNOG-mapper	UHGV-0381918_12	180332.JTGN01000023_gene1590	211.0	0	Belongs to the SOS response-associated peptidase family	N/A
Pfam	UHGV-0381918_12	PF02586	N/A	N/A	SOS response associated peptidase (SRAP)	SRAP
COG	UHGV-0381918_12	COG2135	N/A	N/A	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	N/A
structural_annotation	UHGV-0381918_12	PF02586,NF007413,COG2135	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381918_13	335541.Swol_1669	96.3	3.96e-25	N/A	N/A
AcrCatalog	UHGV-0381918_13	cluster_2172	90.9	1.26e-27	NA	N/A
KOfam	UHGV-0381918_14	K02346	390.9	0	dinB; DNA polymerase IV [EC:2.7.7.7]	N/A
PHROG	UHGV-0381918_14	phrog_1268	294.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381918_14	UniRef90_A0A6N8HWF4	538.0	0	DNA polymerase IV	N/A
eggNOG-mapper	UHGV-0381918_14	428125.CLOLEP_00589	537.0	0	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII	N/A
Pfam	UHGV-0381918_14	PF00817	N/A	N/A	impB/mucB/samB family	IMS
Pfam	UHGV-0381918_14	PF11799	N/A	N/A	impB/mucB/samB family C-terminal domain	IMS_C
NCBIFam	UHGV-0381918_14	NF002848.0	N/A	N/A	DNA polymerase IV	N/A
COG	UHGV-0381918_14	COG0389	N/A	N/A	Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair	N/A
HAMAP	UHGV-0381918_14	MF_01113	N/A	N/A	DNA polymerase IV [dinB]	N/A
structural_annotation	UHGV-0381918_14	PF00817,PF11799,PF21704,MF_01113,NF002848,COG0389	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_15	phrog_5319	84.2	9.1e-25	outer membrane protein	other
UniRef90	UHGV-0381918_15	UniRef90_UPI00026C8620	95.9	5.34e-20	tcdA-E operon negative regulator	N/A
eggNOG-mapper	UHGV-0381918_15	1042156.CXIVA_15870	92.4	1.5e-18	sh3 domain protein	N/A
COG	UHGV-0381918_15	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0381918_15	PF03843,PF12773,MF_00984,TIGR00752,COG3065	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_16	phrog_1533	220.8	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0381918_16	445972.ANACOL_01854	281.0	0	tape measure	N/A
COG	UHGV-0381918_16	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0381918_17	PF12363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381918_18	445972.ANACOL_01851	121.0	6.34e-33	N/A	N/A
structural_annotation	UHGV-0381918_18	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381918_19	665956.HMPREF1032_03624	124.0	7.19e-35	N/A	N/A
structural_annotation	UHGV-0381918_19	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_20	phrog_5	53.2	0.0000000000000074	tail completion or Neck1 protein	connector
UniRef90	UHGV-0381918_20	UniRef90_A0A0R2G1J5	65.1	0.000000000663	N/A	N/A
eggNOG-mapper	UHGV-0381918_20	665956.HMPREF1032_03623	211.0	0	N/A	N/A
structural_annotation	UHGV-0381918_20	PF20039,TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381918_21	665956.HMPREF1032_03622	91.3	5.93e-22	N/A	N/A
eggNOG-mapper	UHGV-0381918_22	665956.HMPREF1032_03621	81.6	8.01e-19	N/A	N/A
PHROG	UHGV-0381918_23	phrog_1328	136.9	1.10001e-40	major head protein	head and packaging
UniRef90	UHGV-0381918_23	UniRef90_UPI00164DD2D5	447.0	0	N/A	N/A
eggNOG-mapper	UHGV-0381918_23	665956.HMPREF1032_03619	233.0	0	N/A	N/A
Pfam	UHGV-0381918_23	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0381918_23	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_24	phrog_172	63.7	4e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0381918_24	UniRef90_UPI00051C87DC	59.7	0.000000215	N/A	N/A
eggNOG-mapper	UHGV-0381918_24	742733.HMPREF9469_01824	61.6	0.00000000624	N/A	N/A
Pfam	UHGV-0381918_24	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0381918_24	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_27	phrog_115	59.3	1.9e-17	minor head protein	head and packaging
UniRef90	UHGV-0381918_27	UniRef90_G9RRL3	224.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0381918_27	665956.HMPREF1032_03615	224.0	0	cell adhesion	N/A
NCBIFam	UHGV-0381918_27	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0381918_27	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_28	phrog_64	200.7	0	portal protein	head and packaging
UniRef90	UHGV-0381918_28	UniRef90_G9RRL2	461.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0381918_28	665956.HMPREF1032_03614	461.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0381918_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0381918_28	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0381918_29	K06909	141.5	7.40026e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0381918_29	phrog_10250	206.7	0	N/A	unknown function
UniRef90	UHGV-0381918_29	UniRef90_A0A7X5IPI2	528.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0381918_29	756499.Desde_1076	481.0	0	TIGRFAM Phage terminase, large subunit, PBSX	N/A
Pfam	UHGV-0381918_29	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0381918_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0381918_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0381918_29	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_30	phrog_606	72.2	7.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0381918_30	UniRef90_UPI00195648BB	115.0	4.35e-30	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0381918_30	397290.C810_05185	120.0	1.64e-32	DNA-packaging protein gp3	N/A
Pfam	UHGV-0381918_30	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0381918_30	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_31	phrog_36	57.3	3.5e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0381918_31	1121335.Clst_0383	63.5	0.0000000000634	N/A	N/A
structural_annotation	UHGV-0381918_31	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_32	phrog_986	81.9	7.1e-24	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381918_32	UniRef90_UPI000B0049A2	73.9	0.0000000000000287	N/A	N/A
eggNOG-mapper	UHGV-0381918_32	1499683.CCFF01000005_gene42	73.9	0.00000000000000482	N/A	N/A
Pfam	UHGV-0381918_32	PF12961	N/A	N/A	N/A	DUF3850
KOfam	UHGV-0381918_35	K00558	163.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0381918_35	phrog_363	244.5	0	DNA methyltransferase	other
UniRef90	UHGV-0381918_35	UniRef90_UPI0011DD03DB	381.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0381918_35	742738.HMPREF9460_04053	352.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0381918_35	MTase_II_00058	123.8	2.2e-36	Type II methyltransferase	RM
Pfam	UHGV-0381918_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0381918_35	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0381918_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0381918_35	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0381918_36	K19170	48.2	0.0000000000000042	dndC; DNA sulfur modification protein DndC	N/A
PHROG	UHGV-0381918_36	phrog_424	101.0	9.7e-30	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0381918_36	UniRef90_UPI001EDCEC57	333.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0381918_36	1232452.BAIB02000007_gene1640	303.0	0	Phosphoadenosine phosphosulfate reductase	N/A
Pfam	UHGV-0381918_36	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0381918_36	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0381918_36	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0381918_38	K06223	200.9	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0381918_38	phrog_56	162.5	0	DNA methyltransferase	other
UniRef90	UHGV-0381918_38	UniRef90_UPI001A9BDB48	379.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0381918_38	1347368.HG964404_gene5006	254.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0381918_38	MTase_II_00030	280.8	0	Type II methyltransferase	RM
Pfam	UHGV-0381918_38	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0381918_38	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0381918_38	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_39	phrog_5708	201.0	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381918_39	UniRef90_A0A659S739	183.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-0381918_39	1415774.U728_1701	210.0	0	DnaD domain protein	N/A
COG	UHGV-0381918_39	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0381918_39	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_40	phrog_2113	51.2	0.000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0381918_40	1160721.RBI_II00485	48.5	0.00001	N/A	N/A
structural_annotation	UHGV-0381918_40	PF21715	N/A	N/A	N/A	N/A
KOfam	UHGV-0381918_41	K03111	146.5	2.49431e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0381918_41	phrog_44	143.9	7.90332e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381918_41	UniRef90_A0A316T6C0	171.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0381918_41	445972.ANACOL_01827	158.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0381918_41	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0381918_41	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0381918_41	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0381918_41	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0381918_41	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_42	phrog_7566	97.1	9.6e-29	N/A	unknown function
UniRef90	UHGV-0381918_42	UniRef90_A0A8D9UHC0	124.0	2.5e-35	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0381918_42	693746.OBV_24070	135.0	6.04999e-40	N/A	N/A
PHROG	UHGV-0381918_43	phrog_72	67.2	2.1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0381918_43	UniRef90_A0A8D9PDS2	164.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0381918_43	445972.ANACOL_01825	162.0	0	N/A	N/A
structural_annotation	UHGV-0381918_43	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0381918_44	phrog_14970	174.2	0	N/A	unknown function
UniRef90	UHGV-0381918_44	UniRef90_UPI001C037E14	142.0	1.16e-37	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0381918_44	1128398.Curi_c14240	148.0	3.19006e-41	double-strand break repair protein	N/A
Pfam	UHGV-0381918_44	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0381918_44	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0381918_44	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0381918_46	K21919	74.0	1.5e-21	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0381918_46	phrog_923	71.3	6.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0381918_46	768710.DesyoDRAFT_5248	87.4	5.12e-18	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0381918_46	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
COG	UHGV-0381918_46	COG1357	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0381918_47	768710.DesyoDRAFT_1143	49.7	0.000000546	N/A	N/A