UHGV-0382333 (vOTU-109055)

Viral Genome: UHGV-0382333

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0382333
vOTU ID	vOTU-109055
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_3028
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9798
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.82
Jumbo phage	No

Genome content
Genome length (bp)	35,989
GC content	53.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	33
CDS density	92%
Average CDS length (bps)	1,000.64
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0382333_1	K03111	157.8	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0382333_1	phrog_44	158.2	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382333_1	UniRef90_A0A1C6G7E1	214.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0382333_1	411467.BACCAP_02389	214.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0382333_1	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0382333_1	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0382333_1	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0382333_1	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0382333_1	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0382333_3	phrog_1227	266.3	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0382333_3	UniRef90_A0A1Y3RPZ6	620.0	0	N/A	N/A
eggNOG-mapper	UHGV-0382333_3	511437.Lbuc_1443	187.0	0	N/A	N/A
Pfam	UHGV-0382333_3	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0382333_3	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0382333_3	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0382333_4	phrog_3657	291.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0382333_4	391038.Bphy_3415	207.0	0	N/A	N/A
COG	UHGV-0382333_6	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0382333_7	phrog_4433	180.5	0	N/A	unknown function
UniRef90	UHGV-0382333_7	UniRef90_A0A6M5C839	135.0	1.87e-36	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0382333_7	33035.JPJF01000122_gene2458	154.0	4.58225e-43	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0382333_7	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0382333_9	UniRef90_UPI000F0633F9	87.8	1.85e-21	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0382333_9	693746.OBV_43260	84.3	7.5e-21	N/A	N/A
structural_annotation	UHGV-0382333_9	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0382333_10	K07741	47.4	0.00000000000063	antB; anti-repressor protein	N/A
PHROG	UHGV-0382333_10	phrog_463	197.6	0	anti-repressor	transcription regulation
UniRef90	UHGV-0382333_10	UniRef90_UPI001EE1020E	191.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0382333_10	887325.HMPREF0381_0355	167.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0382333_10	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0382333_10	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0382333_10	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0382333_10	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0382333_12	K22300	56.0	9.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0382333_12	phrog_4	42.4	0.000000000015	transcriptional repressor	transcription regulation
UniRef90	UHGV-0382333_12	UniRef90_A0A1C6J7L0	134.0	2.46e-38	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0382333_12	411471.SUBVAR_05818	105.0	7.35e-28	sequence-specific DNA binding	N/A
Pfam	UHGV-0382333_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0382333_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0382333_12	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0382333_14	K14059	115.5	7.7e-34	int; integrase	N/A
PHROG	UHGV-0382333_14	phrog_1	134.6	9.7e-40	integrase	integration and excision
UniRef90	UHGV-0382333_14	UniRef90_UPI001874116E	724.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0382333_14	1235835.C814_03141	214.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0382333_14	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0382333_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0382333_14	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0382333_14	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0382333_18	phrog_263	79.0	4e-23	holin	lysis
UniRef90	UHGV-0382333_18	UniRef90_UPI001A917897	117.0	4.52e-33	phage holin	N/A
eggNOG-mapper	UHGV-0382333_18	1121344.JHZO01000003_gene952	105.0	1.32e-28	SPP1 phage holin	N/A
Pfam	UHGV-0382333_18	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0382333_18	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0382333_18	PF04688	N/A	N/A	N/A	N/A
KOfam	UHGV-0382333_19	K01447	121.2	8.9e-36	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0382333_19	phrog_18955	485.7	0	N/A	unknown function
UniRef90	UHGV-0382333_19	UniRef90_UPI0018753F29	736.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0382333_19	742738.HMPREF9460_03968	409.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0382333_19	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0382333_19	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0382333_19	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0382333_19	PF09992,PF01510,PF18342,NF008758,NF040678,COG5632,COG4632,COG4991	N/A	N/A	N/A	N/A
KOfam	UHGV-0382333_20	K07317	55.1	6.5e-17	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0382333_20	phrog_10089	1595.1	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0382333_20	UniRef90_A0A3D1LAM6	2509.0	0	Helicase ATP-binding domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0382333_20	1168281.I3PUW5_9CAUD	1158.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-0382333_20	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0382333_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
Pfam	UHGV-0382333_20	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
eggNOG-mapper	UHGV-0382333_21	1410650.JHWL01000003_gene2815	92.8	1.82e-17	N/A	N/A
PHROG	UHGV-0382333_23	phrog_511	181.7	0	internal virion protein	head and packaging
UniRef90	UHGV-0382333_23	UniRef90_A0A8D9UH72	339.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0382333_23	1519439.JPJG01000060_gene1903	246.0	0	N/A	N/A
structural_annotation	UHGV-0382333_23	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0382333_24	phrog_12105	93.9	1.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0382333_24	1226322.HMPREF1545_03850	50.8	0.0000027	N/A	N/A
PHROG	UHGV-0382333_25	phrog_27545	184.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0382333_25	742738.HMPREF9460_00363	213.0	0	N/A	N/A
eggNOG-mapper	UHGV-0382333_26	2754.EH55_00535	58.2	0.00000204	N/A	N/A
PHROG	UHGV-0382333_27	phrog_15239	68.0	1.2e-19	N/A	unknown function
PHROG	UHGV-0382333_28	phrog_1357	278.7	0	major head protein	head and packaging
UniRef90	UHGV-0382333_28	UniRef90_UPI0019599E86	534.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0382333_28	1203606.HMPREF1526_02746	377.0	0	N/A	N/A
Pfam	UHGV-0382333_28	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0382333_28	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0382333_28	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0382333_29	phrog_13908	284.7	0	N/A	unknown function
UniRef90	UHGV-0382333_29	UniRef90_UPI0012DFC3C8	109.0	2.28e-23	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0382333_29	1203606.HMPREF1526_02747	63.9	0.00000000371	N/A	N/A
KOfam	UHGV-0382333_30	K07584	47.6	0.0000000000003	N/A	N/A
PHROG	UHGV-0382333_30	phrog_4478	47.0	0.00000000000033	peptidase	other
UniRef90	UHGV-0382333_30	UniRef90_A0A7X8Z6F3	56.2	0.000000064	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0382333_30	1229517.AMFD01000023_gene1317	51.2	0.000000569	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0382333_30	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0382333_30	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0382333_30	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0382333_31	phrog_156	311.7	0	portal protein	head and packaging
UniRef90	UHGV-0382333_31	UniRef90_A0A8D9UH10	588.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0382333_31	748224.HMPREF9436_01396	493.0	0	N/A	N/A
structural_annotation	UHGV-0382333_31	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0382333_32	K06909	107.0	2.1e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0382333_32	phrog_979	191.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0382333_32	UniRef90_UPI001D0245C4	753.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0382333_32	411483.FAEPRAA2165_01044	646.0	0	Terminase-like family	N/A
Pfam	UHGV-0382333_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0382333_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0382333_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0382333_33	phrog_309	120.2	1.1e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0382333_33	UniRef90_UPI00100A781C	127.0	8.61e-34	transposase	N/A
eggNOG-mapper	UHGV-0382333_33	469618.FVAG_00793	124.0	2.99e-33	transposase activity	N/A
COG	UHGV-0382333_33	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0382333_33	PF07141	N/A	N/A	N/A	N/A