UHGV-0383138 (vOTU-064406)

Viral Genome: UHGV-0383138

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0383138
vOTU ID	vOTU-064406
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_3376
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.48 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.81
Jumbo phage	No

Genome content
Genome length (bp)	34,160
GC content	45.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	92%
Average CDS length (bps)	591.85
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.48)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0383138_1	phrog_12931	127.3	5.4e-38	N/A	unknown function
structural_annotation	UHGV-0383138_2	PF09693	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0383138_3	608534.GCWU000341_02271	70.9	0.000000000000015	N/A	N/A
PHROG	UHGV-0383138_4	phrog_443	61.8	1.8e-17	holin	lysis
UniRef90	UHGV-0383138_4	UniRef90_UPI000CF1F0AD	115.0	2.1e-32	holin	N/A
eggNOG-mapper	UHGV-0383138_4	411490.ANACAC_00704	83.2	2.6e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0383138_4	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0383138_4	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0383138_5	K01448	112.5	4.9e-33	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0383138_5	phrog_435	173.3	0	endolysin	lysis
UniRef90	UHGV-0383138_5	UniRef90_A0A7G5MSS9	605.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0383138_5	33035.JPJF01000090_gene96	573.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0383138_5	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0383138_5	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
Pfam	UHGV-0383138_5	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0383138_5	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0383138_5	PF01520,PF19127,MF_00417,TIGR02883,TIGR04035,COG0860	N/A	N/A	N/A	N/A
UniRef90	UHGV-0383138_6	UniRef90_A0A7G5N0Z9	137.0	4.65007e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0383138_6	1196322.A370_04524	69.3	0.00000000000000749	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0383138_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0383138_6	PF13443,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0383138_8	K14059	205.8	0	int; integrase	N/A
PHROG	UHGV-0383138_8	phrog_1	186.4	0	integrase	integration and excision
UniRef90	UHGV-0383138_8	UniRef90_A0A174ILI1	617.0	0	Prophage LambdaBa04, site-specific recombinase, phage integrase family	N/A
eggNOG-mapper	UHGV-0383138_8	411902.CLOBOL_02558	605.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0383138_8	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0383138_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0383138_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0383138_8	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0383138_9	UniRef90_A0A3D1I232	89.4	2.47e-21	zinc_ribbon_2 domain-containing protein	N/A
structural_annotation	UHGV-0383138_9	TIGR04165,COG3478	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_10	phrog_87	87.9	8.2e-26	metallo-protease	other
UniRef90	UHGV-0383138_10	UniRef90_UPI001D0534F4	247.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0383138_10	476272.RUMHYD_01733	155.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0383138_10	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0383138_10	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0383138_10	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_11	phrog_18248	47.4	0.00000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-0383138_11	UniRef90_A0A7G5N1G9	223.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0383138_11	411459.RUMOBE_00961	124.0	9.43e-35	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0383138_11	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0383138_11	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0383138_11	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0383138_12	UniRef90_UPI001D03CA97	121.0	5.86e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0383138_12	768486.EHR_00850	47.4	0.00000999	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0383138_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0383138_12	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0383138_13	UniRef90_UPI001D0647EA	145.0	3.22299e-44	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0383138_13	478749.BRYFOR_07577	84.3	1.18e-20	Helix-turn-helix domain	N/A
Pfam	UHGV-0383138_13	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0383138_13	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_18	phrog_674	178.6	0	N/A	unknown function
UniRef90	UHGV-0383138_18	UniRef90_UPI001D03D9A7	316.0	0	N/A	N/A
eggNOG-mapper	UHGV-0383138_18	411460.RUMTOR_02065	188.0	0	N/A	N/A
Pfam	UHGV-0383138_18	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0383138_18	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_19	phrog_155	113.0	1.7e-33	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0383138_19	UniRef90_UPI001D05911B	371.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0383138_19	411460.RUMTOR_02066	213.0	0	ERF superfamily	N/A
Pfam	UHGV-0383138_19	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0383138_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0383138_19	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0383138_20	K03111	131.8	7.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0383138_20	phrog_44	146.1	1.90577e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0383138_20	UniRef90_UPI001D054163	286.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0383138_20	658655.HMPREF0988_02584	207.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0383138_20	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0383138_20	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0383138_20	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0383138_20	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0383138_20	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_21	phrog_3490	161.8	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0383138_21	UniRef90_UPI001D055C38	344.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0383138_21	411460.RUMTOR_02068	279.0	0	N/A	N/A
Pfam	UHGV-0383138_21	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0383138_21	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0383138_22	K02316	70.4	2.7e-20	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0383138_22	phrog_11992	155.2	0	N/A	unknown function
UniRef90	UHGV-0383138_22	UniRef90_UPI001D03BFE3	310.0	0	CHC2 zinc finger domain-containing protein	N/A
eggNOG-mapper	UHGV-0383138_22	476272.RUMHYD_01741	191.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0383138_22	drt-UG29	63.6	2e-18	DRT	DRT
Pfam	UHGV-0383138_22	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0383138_22	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0383138_22	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_23	phrog_8841	577.8	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0383138_23	UniRef90_UPI001D059595	1019.0	0	N/A	N/A
eggNOG-mapper	UHGV-0383138_23	1298920.KI911353_gene4866	827.0	0	N/A	N/A
Pfam	UHGV-0383138_23	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0383138_23	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0383138_23	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0383138_23	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0383138_25	PF01246,MF_00773,NF041909,COG2075	N/A	N/A	N/A	N/A
KOfam	UHGV-0383138_26	K03040	41.9	0.000000000007	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	N/A
PHROG	UHGV-0383138_26	phrog_15077	176.6	0	N/A	unknown function
UniRef90	UHGV-0383138_26	UniRef90_A0A1M6RQ18	184.0	0	RNA polymerase, alpha chain C terminal domain	N/A
eggNOG-mapper	UHGV-0383138_26	478749.BRYFOR_07506	181.0	0	N/A	N/A
Pfam	UHGV-0383138_26	PF03118	N/A	N/A	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
PHROG	UHGV-0383138_27	phrog_10714	48.9	0.00000000000011	N/A	unknown function
PHROG	UHGV-0383138_32	phrog_36	77.2	2.2e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0383138_32	UniRef90_UPI00148B00F2	180.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0383138_32	1235799.C818_04213	179.0	0	sigma factor activity	N/A
Pfam	UHGV-0383138_32	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0383138_32	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0383138_32	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_33	phrog_2412	156.0	0	N/A	unknown function
UniRef90	UHGV-0383138_33	UniRef90_A0A4V1EFZ3	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0383138_33	742723.HMPREF9477_00912	145.0	2.95954e-42	N/A	N/A
KOfam	UHGV-0383138_34	K06909	135.1	6.3e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0383138_34	phrog_2	132.2	5.9e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0383138_34	UniRef90_UPI001EE8F57D	817.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0383138_34	592031.GCWU000322_00074	483.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0383138_34	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0383138_34	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0383138_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0383138_34	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_35	phrog_533	357.6	0	portal protein	head and packaging
UniRef90	UHGV-0383138_35	UniRef90_UPI001D71E5F8	759.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0383138_35	1120998.AUFC01000030_gene2232	400.0	0	N/A	N/A
Pfam	UHGV-0383138_35	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0383138_35	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_36	phrog_581	298.6	0	minor head protein	head and packaging
UniRef90	UHGV-0383138_36	UniRef90_UPI001D05938D	752.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0383138_36	1295642.H839_08294	262.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0383138_36	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0383138_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0383138_36	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0383138_37	411460.RUMTOR_01296	91.3	6.02e-24	N/A	N/A
PHROG	UHGV-0383138_38	phrog_2303	82.3	3e-24	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0383138_38	1280692.AUJL01000027_gene2161	58.5	0.000000068	N/A	N/A
PHROG	UHGV-0383138_39	phrog_212	240.7	0	major head protein	head and packaging
UniRef90	UHGV-0383138_39	UniRef90_A0A396QI19	568.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0383138_39	1151292.QEW_2433	265.0	0	N/A	N/A
structural_annotation	UHGV-0383138_39	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_40	phrog_541	110.5	8.8e-33	head-tail adaptor	connector
UniRef90	UHGV-0383138_40	UniRef90_R5RS10	172.0	0	Protein gp8	N/A
eggNOG-mapper	UHGV-0383138_40	1231057.AMGD01000018_gene3617	83.2	9.79e-19	N/A	N/A
PHROG	UHGV-0383138_41	phrog_793	69.0	6.8e-20	head-tail adaptor	connector
UniRef90	UHGV-0383138_41	UniRef90_UPI001D051971	195.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0383138_41	1449343.JQLQ01000002_gene1330	64.3	0.00000000000515	Minor capsid protein	N/A
Pfam	UHGV-0383138_41	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
COG	UHGV-0383138_41	COG5652	N/A	N/A	VanZ-like family protein (function unknown)	N/A
structural_annotation	UHGV-0383138_41	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0383138_42	UniRef90_UPI001D057CDA	212.0	0	minor capsid protein	N/A
Pfam	UHGV-0383138_42	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
PHROG	UHGV-0383138_43	phrog_913	41.8	0.000000000015	minor head protein	head and packaging
UniRef90	UHGV-0383138_43	UniRef90_UPI001D058B7D	236.0	0	minor capsid protein	N/A
structural_annotation	UHGV-0383138_43	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_44	phrog_820	93.2	2.2e-27	major tail protein	tail
UniRef90	UHGV-0383138_44	UniRef90_A0A3R6YSE8	226.0	0	Capsid protein	N/A
COG	UHGV-0383138_44	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0383138_44	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0383138_45	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_46	phrog_706	164.0	0	N/A	unknown function
UniRef90	UHGV-0383138_46	UniRef90_UPI001D038340	374.0	0	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0383138_46	1229517.AMFD01000018_gene176	108.0	6.41e-27	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0383138_46	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0383138_46	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_48	phrog_1272	251.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0383138_48	UniRef90_UPI001D03A556	821.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0383138_48	428125.CLOLEP_00174	264.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0383138_48	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0383138_48	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0383138_48	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0383138_49	UniRef90_A0A1M4TQW2	239.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0383138_49	1235792.C808_05378	268.0	0	N/A	N/A
structural_annotation	UHGV-0383138_49	PF05709,PF11699,TIGR01633,NF009806,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_50	phrog_9886	757.8	0	N/A	unknown function
UniRef90	UHGV-0383138_50	UniRef90_UPI001A9B2E65	1142.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0383138_50	97139.C824_05957	869.0	0	Phage minor structural protein, N-terminal	N/A
Pfam	UHGV-0383138_50	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0383138_50	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0383138_50	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0383138_50	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0383138_52	phrog_19373	88.2	4.9e-26	N/A	unknown function
eggNOG-mapper	UHGV-0383138_52	1235792.C808_00097	79.3	1.7e-18	N/A	N/A