UHGV-0383386 (vOTU-155848)

Viral Genome: UHGV-0383386

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0383386
vOTU ID	vOTU-155848
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_5938
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.33 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.67
Jumbo phage	No

Genome content
Genome length (bp)	19,169
GC content	45.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	26
CDS density	95%
Average CDS length (bps)	696.92
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0383386_1	phrog_104	252.9	0	portal protein	head and packaging
UniRef90	UHGV-0383386_1	UniRef90_A0A373V3S0	787.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0383386_1	1280698.AUJS01000007_gene1033	489.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0383386_1	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_2	phrog_2494	164.4	0	minor head protein	head and packaging
UniRef90	UHGV-0383386_2	UniRef90_A0A316LS12	175.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0383386_2	875454.BAEW01000017_gene1600	154.0	1.97e-40	N/A	N/A
PHROG	UHGV-0383386_3	phrog_34144	69.5	3.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0383386_3	742742.HMPREF9452_00763	81.3	5.01e-20	N/A	N/A
structural_annotation	UHGV-0383386_3	PF20111	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_4	phrog_17688	301.0	0	N/A	unknown function
UniRef90	UHGV-0383386_4	UniRef90_A0A373V412	846.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0383386_4	936375.HMPREF1152_0677	510.0	0	phage terminase, large subunit	N/A
COG	UHGV-0383386_4	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0383386_4	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_5	phrog_233	65.3	1.7e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0383386_5	UniRef90_A0A7Z2B590	76.6	0.00000000000000573	N/A	N/A
eggNOG-mapper	UHGV-0383386_5	1280698.AUJS01000007_gene1037	66.6	0.00000000000728	N/A	N/A
Pfam	UHGV-0383386_5	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0383386_5	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_6	phrog_32396	126.9	6e-38	N/A	unknown function
UniRef90	UHGV-0383386_6	UniRef90_A0A373V3S9	584.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0383386_6	936375.HMPREF1152_0679	327.0	0	Phage capsid family	N/A
Pfam	UHGV-0383386_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-0383386_6	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_7	phrog_137	53.6	0.0000000000000034	head-tail adaptor Ad1	connector
UniRef90	UHGV-0383386_7	UniRef90_R6C7E8	159.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0383386_7	1121864.OMO_02154	87.0	5.13e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0383386_7	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0383386_7	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_8	phrog_501	82.0	5.8e-24	head closure Hc1	connector
UniRef90	UHGV-0383386_8	UniRef90_R6CEU4	150.0	5.60519e-45	N/A	N/A
eggNOG-mapper	UHGV-0383386_8	43685.Q38120_BPR1T	139.0	3.80004e-41	N/A	N/A
structural_annotation	UHGV-0383386_8	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_9	phrog_387	63.1	3.9e-18	neck protein	connector
eggNOG-mapper	UHGV-0383386_9	1423775.BAMN01000011_gene600	69.3	0.0000000000000127	N/A	N/A
PHROG	UHGV-0383386_10	phrog_123	56.7	4.3e-16	tail terminator	connector
UniRef90	UHGV-0383386_10	UniRef90_A0A2A5RIK6	110.0	3.47e-29	N/A	N/A
eggNOG-mapper	UHGV-0383386_10	1321820.HMPREF1983_00928	113.0	5.03e-31	N/A	N/A
structural_annotation	UHGV-0383386_10	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_11	phrog_117	158.0	0	major tail protein	tail
UniRef90	UHGV-0383386_11	UniRef90_A0A373V4D0	328.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0383386_11	1232446.BAIE02000011_gene1591	186.0	0	domain, Protein	N/A
COG	UHGV-0383386_11	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0383386_11	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_12	phrog_1526	76.6	2.6e-22	N/A	unknown function
UniRef90	UHGV-0383386_12	UniRef90_G2SN49	57.8	0.00000000508	N/A	N/A
eggNOG-mapper	UHGV-0383386_12	665950.HMPREF1025_02524	74.7	2e-16	N/A	N/A
PHROG	UHGV-0383386_13	phrog_1633	125.9	1.8e-37	N/A	unknown function
UniRef90	UHGV-0383386_13	UniRef90_UPI00048D71A1	111.0	2.49e-29	N/A	N/A
eggNOG-mapper	UHGV-0383386_13	1280698.AUJS01000007_gene1046	102.0	2.5e-26	N/A	N/A
Pfam	UHGV-0383386_13	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0383386_13	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_14	phrog_6900	264.4	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0383386_14	585203.SMSK564_1276	323.0	0	phage tail tape measure protein	N/A
COG	UHGV-0383386_14	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0383386_14	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_15	phrog_1194	52.6	0.0000000000000071	N/A	unknown function
eggNOG-mapper	UHGV-0383386_15	1160721.RBI_II00527	103.0	1.06e-26	N/A	N/A
structural_annotation	UHGV-0383386_15	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_16	phrog_6616	56.0	8.5e-28	tail protein	tail
eggNOG-mapper	UHGV-0383386_16	1160721.RBI_II00526	647.0	0	N/A	N/A
structural_annotation	UHGV-0383386_16	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_20	phrog_13256	79.5	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0383386_20	1160721.RBI_II00522	94.4	6.52e-25	N/A	N/A
PHROG	UHGV-0383386_21	phrog_1863	58.2	2.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0383386_21	1226322.HMPREF1545_04027	72.0	0.0000000000000017	N/A	N/A
KOfam	UHGV-0383386_22	K07273	210.9	0	acm; lysozyme	N/A
PHROG	UHGV-0383386_22	phrog_291	169.7	0	endolysin	lysis
UniRef90	UHGV-0383386_22	UniRef90_A0A374BVD1	416.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0383386_22	1160721.RBI_II00521	358.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0383386_22	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0383386_22	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0383386_22	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0383386_22	PF01183,NF002575,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0383386_23	K14059	133.7	2.3e-39	int; integrase	N/A
PHROG	UHGV-0383386_23	phrog_1	168.1	0	integrase	integration and excision
UniRef90	UHGV-0383386_23	UniRef90_A0A373VP80	793.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0383386_23	445972.ANACOL_01797	249.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0383386_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0383386_23	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0383386_23	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0383386_24	K03763	202.7	0	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	N/A
PHROG	UHGV-0383386_24	phrog_192	179.7	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0383386_24	UniRef90_A0A373VNA0	856.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0383386_24	877424.ATWC01000001_gene2107	197.0	0	EXOIII	N/A
PADLOC	UHGV-0383386_24	cd06127	146.3	1.09301e-43	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0383386_24	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0383386_24	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0383386_24	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
PHROG	UHGV-0383386_25	phrog_87	73.0	3.1e-21	metallo-protease	other
UniRef90	UHGV-0383386_25	UniRef90_A0A374HVM5	264.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0383386_25	428125.CLOLEP_02739	97.8	3.07e-24	N/A	N/A
Pfam	UHGV-0383386_25	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0383386_25	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0383386_25	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0383386_26	phrog_8	56.7	6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0383386_26	UniRef90_A0A374HXY0	223.0	0	XRE family transcriptional regulator	N/A
Pfam	UHGV-0383386_26	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0383386_26	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0383386_26	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A