UHGV-0384423 (vOTU-060697)

Viral Genome: UHGV-0384423

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0384423
vOTU ID	vOTU-060697
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_2330
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.71 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.44
Jumbo phage	No

Genome content
Genome length (bp)	39,550
GC content	47.36%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	91%
Average CDS length (bps)	587.16
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.71)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0384423_1	phrog_1535	141.9	2.90069e-42	tail length tape measure protein	tail
UniRef90	UHGV-0384423_1	UniRef90_A0A1C6KXF3	841.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0384423_1	742740.HMPREF9474_03514	1197.0	0	tape measure	N/A
COG	UHGV-0384423_1	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0384423_2	phrog_1194	67.4	1.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0384423_2	742740.HMPREF9474_03515	252.0	0	N/A	N/A
structural_annotation	UHGV-0384423_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_3	phrog_13879	636.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0384423_3	742740.HMPREF9474_03516	1413.0	0	N/A	N/A
structural_annotation	UHGV-0384423_3	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_4	phrog_18725	111.2	8.3e-33	N/A	unknown function
eggNOG-mapper	UHGV-0384423_4	742740.HMPREF9474_03517	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0384423_5	742740.HMPREF9474_03518	245.0	0	N/A	N/A
PHROG	UHGV-0384423_6	phrog_19111	79.0	3.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0384423_6	742740.HMPREF9474_03519	577.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0384423_6	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0384423_6	PF16351	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_8	phrog_1009	41.0	0.000000000027	N/A	unknown function
UniRef90	UHGV-0384423_8	UniRef90_A0A3E2WI44	150.0	1.4013e-45	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0384423_8	742740.HMPREF9474_03521	177.0	0	N/A	N/A
PHROG	UHGV-0384423_9	phrog_1129	72.7	3.2e-21	holin	lysis
UniRef90	UHGV-0384423_9	UniRef90_A0A2N0KEV2	164.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0384423_9	742740.HMPREF9474_03522	164.0	0	N/A	N/A
Pfam	UHGV-0384423_9	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0384423_9	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_10	phrog_11747	161.6	0	N/A	unknown function
UniRef90	UHGV-0384423_10	UniRef90_A0A2H6JTF8	338.0	0	Serine dehydrogenase proteinase	N/A
eggNOG-mapper	UHGV-0384423_10	397290.C810_00839	434.0	0	Periplasmic serine protease	N/A
Pfam	UHGV-0384423_10	PF01972	N/A	N/A	Serine dehydrogenase proteinase	SDH_sah
COG	UHGV-0384423_10	COG0616	N/A	N/A	Periplasmic serine protease, ClpP class	N/A
KOfam	UHGV-0384423_11	K11062	176.5	0	entD; probable enterotoxin D	N/A
PHROG	UHGV-0384423_11	phrog_1794	166.9	0	amidase	lysis
UniRef90	UHGV-0384423_11	UniRef90_A0A1C6EQ03	503.0	0	N-acetylmuramoyl-L-alanine amidase AmiD	N/A
eggNOG-mapper	UHGV-0384423_11	742740.HMPREF9474_03524	489.0	0	Ami_2	N/A
Pfam	UHGV-0384423_11	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0384423_11	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0384423_11	PF01510,PF19127,MF_04111,NF008758,TIGR04035,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0384423_13	K14056	47.9	0.00000000000024	puuR; HTH-type transcriptional regulator, repressor for puuD	N/A
PHROG	UHGV-0384423_13	phrog_3	44.0	0.0000000000082	transcriptional repressor	transcription regulation
UniRef90	UHGV-0384423_13	UniRef90_E7GRI2	215.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0384423_13	742740.HMPREF9474_03527	215.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0384423_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0384423_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0384423_13	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0384423_14	K14059	181.4	0	int; integrase	N/A
PHROG	UHGV-0384423_14	phrog_1	161.9	0	integrase	integration and excision
UniRef90	UHGV-0384423_14	UniRef90_A0A1C6K4B6	721.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-0384423_14	742740.HMPREF9474_03478	722.0	0	DNA integration	N/A
Pfam	UHGV-0384423_14	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0384423_14	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0384423_14	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0384423_14	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_15	phrog_806	90.5	1.4e-26	N/A	unknown function
UniRef90	UHGV-0384423_15	UniRef90_A0A2N0KAZ5	412.0	0	N/A	N/A
eggNOG-mapper	UHGV-0384423_15	476272.RUMHYD_01730	213.0	0	N/A	N/A
Pfam	UHGV-0384423_15	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-0384423_15	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_16	phrog_7823	102.3	3.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-0384423_16	33035.JPJF01000158_gene3562	110.0	3.4e-30	N/A	N/A
PHROG	UHGV-0384423_17	phrog_87	85.6	4.3e-25	metallo-protease	other
UniRef90	UHGV-0384423_17	UniRef90_A0A6N3EMW6	303.0	0	Metallopeptidase ImmA	N/A
eggNOG-mapper	UHGV-0384423_17	1235802.C823_04751	130.0	7.35e-37	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0384423_17	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0384423_17	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0384423_17	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0384423_18	K22300	51.3	0.000000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0384423_18	phrog_8	70.0	4.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0384423_18	UniRef90_A0A2N0KB19	282.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0384423_18	411459.RUMOBE_00961	172.0	0	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0384423_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0384423_18	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0384423_18	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_19	phrog_8	51.8	0.000000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0384423_19	UniRef90_A0A2N0KB25	124.0	3.5e-36	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0384423_19	411460.RUMTOR_02057	100.0	2.43e-27	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0384423_19	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0384423_19	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384423_21	PF17452	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_24	phrog_36464	85.8	4.4e-25	N/A	unknown function
UniRef90	UHGV-0384423_24	UniRef90_R6QN85	81.3	1.18e-18	50S ribosomal protein L11 domain protein	N/A
eggNOG-mapper	UHGV-0384423_24	742740.HMPREF9474_03484	157.0	0	N/A	N/A
structural_annotation	UHGV-0384423_24	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_28	phrog_26484	99.6	1.6e-29	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384423_28	UniRef90_UPI00189AC3C9	152.0	0	PC4/YdbC family ssDNA-binding protein	N/A
eggNOG-mapper	UHGV-0384423_28	411902.CLOBOL_02549	107.0	6.78e-30	Transcriptional Coactivator p15 (PC4)	N/A
Pfam	UHGV-0384423_28	PF02229	N/A	N/A	Transcriptional Coactivator p15 (PC4)	PC4
COG	UHGV-0384423_28	COG4443	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384423_28	COG4443	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_29	phrog_22695	84.4	4.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0384423_29	1235799.C818_04196	87.0	1.28e-19	N/A	N/A
KOfam	UHGV-0384423_30	K07465	48.6	0.00000000000012	K07465; putative RecB family exonuclease	N/A
PHROG	UHGV-0384423_30	phrog_69	345.7	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384423_30	UniRef90_UPI00189C4093	766.0	0	N/A	N/A
eggNOG-mapper	UHGV-0384423_30	1235799.C818_04197	504.0	0	N/A	N/A
Pfam	UHGV-0384423_30	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0384423_30	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0384423_30	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_31	phrog_112	192.5	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384423_31	UniRef90_UPI001923128B	409.0	0	N/A	N/A
eggNOG-mapper	UHGV-0384423_31	1235799.C818_04198	327.0	0	N/A	N/A
Pfam	UHGV-0384423_31	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0384423_31	PF10991,MF_04153,NF005241	N/A	N/A	N/A	N/A
KOfam	UHGV-0384423_32	K02334	851.3	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0384423_32	phrog_17	391.6	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384423_32	UniRef90_UPI0019203FEB	1254.0	0	DNA polymerase	N/A
eggNOG-mapper	UHGV-0384423_32	1235799.C818_04199	1003.0	0	DNA polymerase A domain	N/A
Pfam	UHGV-0384423_32	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
COG	UHGV-0384423_32	COG0749	N/A	N/A	DNA polymerase I, 3'-5' exonuclease and polymerase domains	N/A
structural_annotation	UHGV-0384423_32	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_33	phrog_256	1027.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384423_33	UniRef90_UPI0019225F90	1633.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0384423_33	1235799.C818_04200	1169.0	0	Virulence-associated protein E	N/A
Pfam	UHGV-0384423_33	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0384423_33	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0384423_33	PF05272,NF011296,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_34	phrog_93	61.5	1.2e-17	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384423_34	UniRef90_UPI0019216A8D	210.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0384423_34	1235799.C818_04201	147.0	7.00649e-45	VRR_NUC	N/A
Pfam	UHGV-0384423_34	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0384423_34	PF01870,MF_01490,NF002585,COG1591	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384423_35	UniRef90_UPI00189AE718	223.0	0	VRR-NUC domain-containing protein	N/A
structural_annotation	UHGV-0384423_35	PF18741	N/A	N/A	N/A	N/A
KOfam	UHGV-0384423_36	K14440	122.3	1e-36	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0384423_36	phrog_62	404.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384423_36	UniRef90_UPI0019226575	926.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-0384423_36	1235799.C818_04202	766.0	0	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-0384423_36	DpdE_00010	93.1	3.2e-27	DpdE	DPD
Pfam	UHGV-0384423_36	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0384423_36	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0384423_36	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0384423_36	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384423_37	PF16535,NF011863	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_43	phrog_36	54.2	0.0000000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-0384423_43	UniRef90_A0A1C6ELQ7	248.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0384423_43	742740.HMPREF9474_03497	240.0	0	N/A	N/A
structural_annotation	UHGV-0384423_43	PF02996	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384423_44	UniRef90_F7JKT1	84.7	1.56e-20	C2H2-type domain-containing protein	N/A
COG	UHGV-0384423_44	COG2852	N/A	N/A	Very-short-patch-repair endonuclease	N/A
KOfam	UHGV-0384423_45	K07474	166.9	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0384423_45	phrog_51	156.9	0	terminase small subunit	head and packaging
UniRef90	UHGV-0384423_45	UniRef90_E7GRF4	300.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0384423_45	742740.HMPREF9474_03499	300.0	0	Terminase Small Subunit	N/A
Pfam	UHGV-0384423_45	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0384423_45	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0384423_45	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0384423_46	K06909	78.8	8.1e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0384423_46	phrog_2	57.1	4.4e-16	terminase large subunit	head and packaging
UniRef90	UHGV-0384423_46	UniRef90_UPI00192D4B43	801.0	0	terminase	N/A
eggNOG-mapper	UHGV-0384423_46	742740.HMPREF9474_03500	797.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0384423_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0384423_46	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_47	phrog_31760	57.8	1.2e-16	N/A	unknown function
PHROG	UHGV-0384423_48	phrog_533	286.0	0	portal protein	head and packaging
UniRef90	UHGV-0384423_48	UniRef90_E7GRF6	971.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0384423_48	742740.HMPREF9474_03501	971.0	0	N/A	N/A
structural_annotation	UHGV-0384423_48	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_49	phrog_25639	120.9	3e-36	N/A	unknown function
eggNOG-mapper	UHGV-0384423_49	742740.HMPREF9474_03502	110.0	3.2e-31	N/A	N/A
PHROG	UHGV-0384423_50	phrog_581	246.1	0	minor head protein	head and packaging
UniRef90	UHGV-0384423_50	UniRef90_UPI00157055D2	688.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0384423_50	742740.HMPREF9474_03503	1031.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0384423_50	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0384423_50	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_53	phrog_2303	139.3	2.79993e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0384423_53	742740.HMPREF9474_03504	288.0	0	N/A	N/A
PHROG	UHGV-0384423_54	phrog_422	355.2	0	major head protein	head and packaging
UniRef90	UHGV-0384423_54	UniRef90_E7GRG0	544.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0384423_54	742740.HMPREF9474_03505	544.0	0	N/A	N/A
structural_annotation	UHGV-0384423_54	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_55	phrog_1378	71.4	8.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-0384423_55	742740.HMPREF9474_03506	122.0	3.68e-35	N/A	N/A
PHROG	UHGV-0384423_56	phrog_541	89.6	2.7e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0384423_56	742740.HMPREF9474_03507	226.0	0	N/A	N/A
PHROG	UHGV-0384423_57	phrog_8710	147.6	2.52234e-44	N/A	unknown function
eggNOG-mapper	UHGV-0384423_57	742740.HMPREF9474_03508	200.0	0	N/A	N/A
structural_annotation	UHGV-0384423_57	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_58	phrog_556	57.8	9.9e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0384423_58	742740.HMPREF9474_03509	207.0	0	N/A	N/A
PHROG	UHGV-0384423_59	phrog_2595	88.0	9.2e-26	head-tail connector protein	connector
UniRef90	UHGV-0384423_59	UniRef90_UPI001D068DAC	192.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0384423_59	742740.HMPREF9474_03510	182.0	0	N/A	N/A
Pfam	UHGV-0384423_59	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0384423_59	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_60	phrog_820	132.7	1.6e-39	major tail protein	tail
eggNOG-mapper	UHGV-0384423_60	483218.BACPEC_01149	233.0	0	domain, Protein	N/A
COG	UHGV-0384423_60	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384423_60	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0384423_61	phrog_8300	86.9	1.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0384423_61	742740.HMPREF9474_03512	147.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-0384423_61	PF06854	N/A	N/A	N/A	N/A