UHGV-0385486 (vOTU-032717)

Viral Genome: UHGV-0385486

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0385486
vOTU ID	vOTU-032717
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4596
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.19 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.87
Jumbo phage	No

Genome content
Genome length (bp)	25,365
GC content	40.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	95%
Average CDS length (bps)	669.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0385486_1	phrog_5601	84.8	1.1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0385486_1	UniRef90_C6AM46	208.0	0	Terminase small subunit Gp1	N/A
eggNOG-mapper	UHGV-0385486_1	1432056.X781_8130	209.0	0	N/A	N/A
PHROG	UHGV-0385486_2	phrog_9	338.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0385486_2	UniRef90_C6AM47	913.0	0	Terminase large subunit Gp2	N/A
eggNOG-mapper	UHGV-0385486_2	634176.NT05HA_0494	913.0	0	Phage Terminase	N/A
Pfam	UHGV-0385486_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0385486_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0385486_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0385486_2	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_3	phrog_12	335.7	0	portal protein	head and packaging
UniRef90	UHGV-0385486_3	UniRef90_A0A1V3J675	683.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0385486_3	634176.NT05HA_0495	677.0	0	Phage portal protein	N/A
Pfam	UHGV-0385486_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0385486_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0385486_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0385486_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0385486_4	K06904	167.9	0	N/A	N/A
PHROG	UHGV-0385486_4	phrog_80	167.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0385486_4	UniRef90_A0A1V3J739	381.0	0	Peptidase U35	N/A
eggNOG-mapper	UHGV-0385486_4	634176.NT05HA_0496	379.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0385486_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0385486_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0385486_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0385486_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_5	phrog_10	236.7	0	major head protein	head and packaging
UniRef90	UHGV-0385486_5	UniRef90_D0FM49	609.0	0	Phage major capsid protein HK97	N/A
eggNOG-mapper	UHGV-0385486_5	634176.NT05HA_0497	609.0	0	Phage capsid family	N/A
Pfam	UHGV-0385486_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0385486_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0385486_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0385486_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_6	phrog_40	106.0	1.7e-31	head-tail adaptor Ad1	connector
UniRef90	UHGV-0385486_6	UniRef90_UPI0009F5EAD6	170.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0385486_6	155515.JP36_07465	156.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0385486_6	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0385486_6	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0385486_6	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_7	phrog_25	100.0	1.6e-29	head closure Hc1	connector
UniRef90	UHGV-0385486_7	UniRef90_UPI0008A51E25	197.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0385486_7	634176.NT05HA_0498	183.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0385486_7	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0385486_7	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0385486_7	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0385486_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_8	phrog_5	97.5	1.2e-28	tail completion or Neck1 protein	connector
UniRef90	UHGV-0385486_8	UniRef90_A0A496N7M2	288.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0385486_8	339671.Asuc_1243	194.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0385486_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0385486_8	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0385486_8	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_9	phrog_78	54.7	0.0000000000000021	tail terminator	connector
UniRef90	UHGV-0385486_9	UniRef90_A0A496N8G8	229.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385486_9	634176.NT05HA_0500	184.0	0	N/A	N/A
Pfam	UHGV-0385486_9	PF11367	N/A	N/A	N/A	DUF3168
structural_annotation	UHGV-0385486_9	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_10	phrog_584	174.9	0	major tail protein	tail
UniRef90	UHGV-0385486_10	UniRef90_W0Q3V9	354.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385486_10	339671.Asuc_1245	368.0	0	N/A	N/A
structural_annotation	UHGV-0385486_10	PF16461,PF12195,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_11	phrog_344	70.6	1.9e-20	tail assembly chaperone	tail
UniRef90	UHGV-0385486_11	UniRef90_A0A0D6G0U4	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385486_11	1028806.GGE_0498	181.0	0	N/A	N/A
structural_annotation	UHGV-0385486_11	PF16462	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_12	phrog_337	47.2	0.00000000000043	tail protein	tail
UniRef90	UHGV-0385486_12	UniRef90_A0A496N3H3	148.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0385486_12	1028806.GGE_0497	125.0	3.55e-37	N/A	N/A
Pfam	UHGV-0385486_12	PF13227	N/A	N/A	N/A	DUF4035
structural_annotation	UHGV-0385486_12	PF13227,TIGR01715	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_13	phrog_3519	314.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0385486_13	UniRef90_UPI000DAC341F	1649.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0385486_13	696748.ASU2_02755	683.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0385486_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-0385486_13	PF09718	N/A	N/A	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
NCBIFam	UHGV-0385486_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0385486_13	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0385486_13	PF20155,PF06120,MF_04138,TIGR01541,TIGR01760,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_14	phrog_14	84.4	1.5e-24	minor tail protein	tail
UniRef90	UHGV-0385486_14	UniRef90_UPI000DABF0E4	226.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0385486_14	155515.JP36_10715	147.0	8.40779e-45	Phage minor tail	N/A
Pfam	UHGV-0385486_14	PF05939	N/A	N/A	Phage minor tail protein	Phage_min_tail
COG	UHGV-0385486_14	COG4718	N/A	N/A	Phage tail protein	N/A
structural_annotation	UHGV-0385486_14	PF05939,TIGR02217,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_15	phrog_18	247.8	0	minor tail protein	tail
UniRef90	UHGV-0385486_15	UniRef90_UPI000DAEB643	468.0	0	phage minor tail protein L	N/A
eggNOG-mapper	UHGV-0385486_15	1095743.HMPREF1054_1759	446.0	0	minor tail protein L	N/A
Pfam	UHGV-0385486_15	PF05100	N/A	N/A	Phage minor tail protein L	Phage_tail_L
NCBIFam	UHGV-0385486_15	TIGR01600.1	N/A	N/A	phage minor tail protein L	N/A
COG	UHGV-0385486_15	COG4672	N/A	N/A	Phage tail protein	N/A
structural_annotation	UHGV-0385486_15	PF05100,TIGR01600,COG4672	N/A	N/A	N/A	N/A
KOfam	UHGV-0385486_16	K21140	60.9	1.8e-17	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	N/A
PHROG	UHGV-0385486_16	phrog_30	316.7	0	minor tail protein	tail
UniRef90	UHGV-0385486_16	UniRef90_UPI000DABF8A3	468.0	0	C40 family peptidase	N/A
eggNOG-mapper	UHGV-0385486_16	1095743.HMPREF1054_1758	448.0	0	JAB/MPN domain	N/A
Pfam	UHGV-0385486_16	PF14464	N/A	N/A	Prokaryotic homologs of the JAB domain	Prok-JAB
Pfam	UHGV-0385486_16	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0385486_16	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0385486_16	PF14464,PF00877,NF041370,TIGR02219,COG1310,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_17	phrog_32	215.5	0	tail assembly protein	tail
UniRef90	UHGV-0385486_17	UniRef90_UPI000DADEA70	327.0	0	tail assembly protein	N/A
eggNOG-mapper	UHGV-0385486_17	637911.AM305_06301	182.0	0	tail assembly	N/A
COG	UHGV-0385486_17	COG4723	N/A	N/A	Phage-related protein, tail assembly protein I	N/A
structural_annotation	UHGV-0385486_17	PF06805,NF008347,COG4723	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_18	phrog_31	983.9	0	baseplate hub protein Tal	tail
UniRef90	UHGV-0385486_18	UniRef90_UPI0008A44469	1734.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0385486_18	1095743.HMPREF1054_1756	1416.0	0	Phage-related protein, tail component	N/A
Pfam	UHGV-0385486_18	PF13550	N/A	N/A	Putative phage tail protein	Phage-tail_3
COG	UHGV-0385486_18	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0385486_18	PF13550,PF09327,PF16303,PF14879,PF03944,MF_04116,NF040662,NF038126,TIGR04183,COG4733	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_20	phrog_14212	128.0	2.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0385486_20	1028806.GGE_0492	139.0	7.75058e-42	N/A	N/A
PHROG	UHGV-0385486_21	phrog_1084	60.3	3.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0385486_21	1028806.GGE_1475	74.3	0.00000000000000135	N/A	N/A
structural_annotation	UHGV-0385486_21	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_23	phrog_4757	58.0	1.8e-16	N/A	unknown function
UniRef90	UHGV-0385486_23	UniRef90_A0A516L8S8	59.3	0.0000000501	Putative capsid-related protein	N/A
eggNOG-mapper	UHGV-0385486_23	546266.NEIMUCOT_04008	72.0	0.00000000000014	Phage portal protein, lambda family	N/A
COG	UHGV-0385486_23	COG5511	N/A	N/A	Phage capsid protein	N/A
PHROG	UHGV-0385486_24	phrog_21909	130.0	2e-38	N/A	unknown function
eggNOG-mapper	UHGV-0385486_24	1095743.HMPREF1054_1308	144.0	8.06e-40	N/A	N/A
PHROG	UHGV-0385486_25	phrog_1	45.4	0.0000000000015	integrase	integration and excision
UniRef90	UHGV-0385486_25	UniRef90_A0A8D4RAJ0	129.0	1.38e-36	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0385486_25	71421.HI_1424	130.0	5.5e-36	Phage integrase family	N/A
Pfam	UHGV-0385486_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0385486_25	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0385486_26	phrog_245	170.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0385486_26	UniRef90_A0A8D4QGG3	374.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0385486_26	1278971.AOGF01000056_gene1154	176.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0385486_26	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0385486_26	PF10552	N/A	N/A	ORF6C domain	ORF6C
Pfam	UHGV-0385486_26	PF10548	N/A	N/A	P22AR C-terminal domain	P22_AR_C
COG	UHGV-0385486_26	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0385486_26	PF10548,PF10552,PF10543,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_27	phrog_9552	116.5	2.2e-34	kinase	other
UniRef90	UHGV-0385486_27	UniRef90_A0A369ZIQ4	102.0	5.72e-25	Pyruvate kinase	N/A
eggNOG-mapper	UHGV-0385486_27	1316932.MHH_c17570	92.0	1.38e-21	N/A	N/A
PHROG	UHGV-0385486_28	phrog_474	52.6	0.000000000000012	phosphofructokinase	other
UniRef90	UHGV-0385486_28	UniRef90_A0A7M1NV53	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-0385486_28	669262.COK_0725	86.7	1.06e-20	N/A	N/A
Pfam	UHGV-0385486_28	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0385486_30	PF06289,COG1582	N/A	N/A	N/A	N/A
KOfam	UHGV-0385486_31	K03111	169.7	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0385486_31	phrog_44	146.1	1.90577e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385486_31	UniRef90_A0A7M1NWI8	249.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0385486_31	1028806.GGE_1963	188.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0385486_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0385486_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0385486_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0385486_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0385486_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_32	phrog_5715	335.8	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385486_32	UniRef90_UPI000DAF0680	427.0	0	translocation protein TolB precursor	N/A
eggNOG-mapper	UHGV-0385486_32	1028806.GGE_1172	400.0	0	N/A	N/A
structural_annotation	UHGV-0385486_32	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0385486_33	K07455	207.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0385486_33	phrog_148	216.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0385486_33	UniRef90_A0A1B8QYR2	525.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0385486_33	1028806.GGE_1171	459.0	0	RecT family	N/A
Pfam	UHGV-0385486_33	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0385486_33	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0385486_33	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0385486_33	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0385486_35	phrog_27154	49.0	0.000000000000046	N/A	unknown function
structural_annotation	UHGV-0385486_35	PF11112,TIGR02054	N/A	N/A	N/A	N/A