UHGV-0387307 (vOTU-171496)

Viral Genome: UHGV-0387307

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0387307
vOTU ID	vOTU-171496
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4415
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.75 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9711
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.71
Jumbo phage	No

Genome content
Genome length (bp)	26,663
GC content	49.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	89%
Average CDS length (bps)	590.25
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 60.75)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0387307_1	phrog_2303	53.2	0.0000000000000052	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0387307_1	1226322.HMPREF1545_00049	255.0	0	N/A	N/A
AcrCatalog	UHGV-0387307_1	cluster_74817	55.1	0.00000000000657	NA	N/A
PHROG	UHGV-0387307_2	phrog_10	174.8	0	major head protein	head and packaging
UniRef90	UHGV-0387307_2	UniRef90_U2SBS0	611.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0387307_2	1226322.HMPREF1545_00050	611.0	0	Phage capsid family	N/A
Pfam	UHGV-0387307_2	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0387307_2	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0387307_2	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0387307_2	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_3	phrog_541	106.4	1.6e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-0387307_3	1120998.AUFC01000030_gene2237	68.6	0.000000000000731	N/A	N/A
PHROG	UHGV-0387307_4	phrog_3366	106.4	2.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-0387307_4	1226322.HMPREF1545_00053	226.0	0	N/A	N/A
structural_annotation	UHGV-0387307_4	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_5	phrog_556	50.3	0.000000000000036	minor head protein	head and packaging
UniRef90	UHGV-0387307_5	UniRef90_A0A2U1BEM0	205.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0387307_5	1226322.HMPREF1545_00054	161.0	0	Minor capsid protein	N/A
Pfam	UHGV-0387307_5	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0387307_5	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_6	phrog_3266	57.5	2e-16	tail completion	connector
eggNOG-mapper	UHGV-0387307_6	1232443.BAIA02000078_gene24	232.0	0	N/A	N/A
structural_annotation	UHGV-0387307_6	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_7	phrog_3099	86.9	2.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0387307_7	1232443.BAIA02000078_gene23	262.0	0	N/A	N/A
structural_annotation	UHGV-0387307_7	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_8	phrog_11299	86.7	2.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0387307_8	693746.OBV_18160	194.0	0	N/A	N/A
structural_annotation	UHGV-0387307_8	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_9	phrog_706	84.7	9.7e-25	N/A	unknown function
UniRef90	UHGV-0387307_9	UniRef90_UPI001D069FB9	368.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0387307_9	693746.OBV_18170	196.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0387307_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0387307_9	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_10	phrog_8545	42.2	0.000000000011	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0387307_10	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-0387307_11	phrog_1535	116.4	4.1e-38	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0387307_11	693746.OBV_18190	477.0	0	domain protein	N/A
COG	UHGV-0387307_11	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387307_11	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_12	phrog_1194	61.1	1.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0387307_12	1226322.HMPREF1545_00060	230.0	0	N/A	N/A
structural_annotation	UHGV-0387307_12	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_13	phrog_32744	663.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0387307_13	1120998.AUFC01000030_gene2247	233.0	0	N/A	N/A
structural_annotation	UHGV-0387307_13	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0387307_15	1297617.JPJD01000099_gene2171	108.0	1.13e-24	Collagen triple helix repeat protein	N/A
COG	UHGV-0387307_15	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0387307_15	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_16	phrog_13589	71.5	6.39973e-42	N/A	unknown function
eggNOG-mapper	UHGV-0387307_16	411471.SUBVAR_06929	331.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0387307_16	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0387307_20	phrog_937	54.8	0.0000000000000015	hemolysin	other
eggNOG-mapper	UHGV-0387307_20	428125.CLOLEP_00170	61.2	0.000000000164	N/A	N/A
PHROG	UHGV-0387307_21	phrog_1129	66.6	2.6e-19	holin	lysis
UniRef90	UHGV-0387307_21	UniRef90_A0A416QZD1	127.0	1.76e-36	Enolase	N/A
eggNOG-mapper	UHGV-0387307_21	1007096.BAGW01000036_gene2663	123.0	1.21e-35	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0387307_21	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0387307_21	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0387307_23	K01448	131.9	5.5e-39	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0387307_23	phrog_435	136.9	1.7e-40	endolysin	lysis
UniRef90	UHGV-0387307_23	UniRef90_A0A1C6B3W5	419.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0387307_23	1410668.JNKC01000001_gene1675	149.0	3.25998e-41	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0387307_23	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0387307_23	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0387307_23	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0387307_24	K14059	108.6	9.5e-32	int; integrase	N/A
PHROG	UHGV-0387307_24	phrog_1	135.4	5e-40	integrase	integration and excision
UniRef90	UHGV-0387307_24	UniRef90_UPI00195CC1EE	607.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0387307_24	1235835.C814_03141	209.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0387307_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0387307_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0387307_24	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_25	phrog_7115	151.2	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0387307_25	UniRef90_G9YSE2	269.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387307_25	1121344.JHZO01000003_gene733	239.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0387307_25	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0387307_25	PF08000,COG3402	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_26	phrog_2657	160.7	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0387307_26	UniRef90_A0A1C6B9J9	534.0	0	KilA-N domain	N/A
eggNOG-mapper	UHGV-0387307_26	428125.CLOLEP_01836	427.0	0	COG NOG08824 non supervised orthologous group	N/A
Pfam	UHGV-0387307_26	PF04383	N/A	N/A	KilA-N domain	KilA-N
structural_annotation	UHGV-0387307_26	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_27	phrog_33872	51.2	3.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0387307_27	693746.OBV_19740	49.3	0.00000403	N/A	N/A
PHROG	UHGV-0387307_28	phrog_3243	105.1	6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0387307_28	428127.EUBDOL_01231	66.6	0.000000000954	N/A	N/A
structural_annotation	UHGV-0387307_28	PF15072,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-0387307_29	K01356	79.9	4.3e-23	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0387307_29	phrog_4	132.0	3.9e-39	transcriptional repressor	transcription regulation
UniRef90	UHGV-0387307_29	UniRef90_A0A4R2M2M5	203.0	0	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0387307_29	483218.BACPEC_00238	94.7	2.44e-20	N/A	N/A
Pfam	UHGV-0387307_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0387307_29	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0387307_29	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0387307_29	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_30	phrog_3202	81.9	4.7e-24	N/A	unknown function
UniRef90	UHGV-0387307_30	UniRef90_UPI001D02D9D4	124.0	2.48e-36	YjzC family protein	N/A
eggNOG-mapper	UHGV-0387307_30	1120978.KB894087_gene417	93.6	8.59e-25	YjzC-like protein	N/A
Pfam	UHGV-0387307_30	PF14168	N/A	N/A	YjzC-like protein	YjzC
structural_annotation	UHGV-0387307_30	PF14168	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387307_31	PF20385,NF040556	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387307_32	UniRef90_UPI000F0633F9	87.0	3.73e-21	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0387307_32	693746.OBV_43260	78.2	2.06e-18	N/A	N/A
structural_annotation	UHGV-0387307_32	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0387307_35	K22300	48.3	0.00000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0387307_35	phrog_8	59.8	6.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0387307_35	UniRef90_UPI000464DC06	110.0	3.23e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0387307_35	864563.HMPREF9166_0595	72.4	6.95e-16	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0387307_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0387307_35	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0387307_35	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0387307_36	K15773	41.1	0.000000000031	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0387307_36	phrog_3	42.3	0.000000000029	transcriptional repressor	transcription regulation
UniRef90	UHGV-0387307_36	UniRef90_UPI0012DE0A5F	104.0	3.48e-28	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0387307_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0387307_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0387307_36	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387307_39	PF13560	N/A	N/A	N/A	N/A
PHROG	UHGV-0387307_40	phrog_5070	116.9	1.1e-34	N/A	unknown function
UniRef90	UHGV-0387307_40	UniRef90_A0A373IMM1	72.4	0.00000000000000613	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0387307_40	556263.FSEG_02145	81.3	1.39e-17	lipid A biosynthetic process	N/A
COG	UHGV-0387307_40	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A