UHGV-0387457 (vOTU-052012)

Viral Genome: UHGV-0387457

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0387457
vOTU ID	vOTU-052012
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_2688
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.973
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.73
Jumbo phage	No

Genome content
Genome length (bp)	38,026
GC content	35.69%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	89%
Average CDS length (bps)	677.58
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0387457_1	476272.RUMHYD_01994	65.1	0.000000000321	N/A	N/A
PHROG	UHGV-0387457_2	phrog_6616	292.9	0	tail protein	tail
UniRef90	UHGV-0387457_2	UniRef90_A0A2Y9BMC1	171.0	1.47e-40	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387457_2	33035.JPJF01000043_gene1002	144.0	5.9e-33	N/A	N/A
PHROG	UHGV-0387457_3	phrog_1194	69.8	3.3e-20	N/A	unknown function
structural_annotation	UHGV-0387457_3	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_4	phrog_1535	157.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0387457_4	UniRef90_A0A1C5N853	141.0	9.74e-31	Phage-related protein	N/A
eggNOG-mapper	UHGV-0387457_4	1449050.JNLE01000003_gene3881	146.0	5.85e-33	domain protein	N/A
COG	UHGV-0387457_4	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_5	phrog_706	127.5	9.3e-38	N/A	unknown function
UniRef90	UHGV-0387457_5	UniRef90_UPI0011DC8B0C	184.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0387457_5	411459.RUMOBE_01383	172.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0387457_5	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0387457_5	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_6	phrog_11299	109.3	2.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-0387457_6	1298920.KI911353_gene2067	107.0	4.09e-27	N/A	N/A
structural_annotation	UHGV-0387457_6	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_7	phrog_3099	153.0	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0387457_7	1160721.RBI_II00532	214.0	0	N/A	N/A
structural_annotation	UHGV-0387457_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_8	phrog_3266	73.6	2.3e-21	tail completion	connector
eggNOG-mapper	UHGV-0387457_8	1304866.K413DRAFT_3042	91.3	2.19e-21	N/A	N/A
structural_annotation	UHGV-0387457_8	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_9	phrog_556	88.9	3.8e-26	minor head protein	head and packaging
UniRef90	UHGV-0387457_9	UniRef90_A0A1M7NJ72	122.0	3.41e-33	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0387457_9	1304866.K413DRAFT_3041	107.0	8.64e-28	N/A	N/A
Pfam	UHGV-0387457_9	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0387457_9	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_10	phrog_3366	63.3	3.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0387457_10	1449050.JNLE01000003_gene3887	86.3	3.63e-20	N/A	N/A
Pfam	UHGV-0387457_10	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0387457_10	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_12	phrog_541	90.6	1.3e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0387457_12	1449050.JNLE01000003_gene3888	81.3	4.03e-18	N/A	N/A
PHROG	UHGV-0387457_13	phrog_10	183.5	0	major head protein	head and packaging
UniRef90	UHGV-0387457_13	UniRef90_UPI001D090FF5	448.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0387457_13	411462.DORLON_00786	436.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0387457_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0387457_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0387457_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0387457_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_14	phrog_2303	99.7	3.2e-29	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0387457_14	1321782.HMPREF1986_02267	142.0	3.17e-40	N/A	N/A
structural_annotation	UHGV-0387457_14	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0387457_15	K07584	86.4	3.9e-25	N/A	N/A
PHROG	UHGV-0387457_15	phrog_4478	63.9	1.9e-18	peptidase	other
UniRef90	UHGV-0387457_15	UniRef90_A0A7X5D4J7	77.4	2.48e-16	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0387457_15	1111454.HMPREF1250_1981	71.6	0.00000000000000768	Cysteine protease Prp	N/A
Pfam	UHGV-0387457_15	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0387457_15	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387457_15	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_16	phrog_581	101.3	1e-29	minor head protein	head and packaging
UniRef90	UHGV-0387457_16	UniRef90_J0WZ11	66.6	0.0000000000269	Phage minor capsid protein 2 domain protein	N/A
eggNOG-mapper	UHGV-0387457_16	1449050.JNLE01000003_gene3892	139.0	7.8e-38	Phage minor capsid protein 2	N/A
Pfam	UHGV-0387457_16	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0387457_16	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_19	phrog_581	208.9	0	minor head protein	head and packaging
UniRef90	UHGV-0387457_19	UniRef90_A0A3C2B9H7	258.0	0	Ntox50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387457_19	1449050.JNLE01000003_gene3892	215.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0387457_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0387457_19	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0387457_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387457_19	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_20	phrog_533	380.7	0	portal protein	head and packaging
UniRef90	UHGV-0387457_20	UniRef90_UPI00156E473F	559.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0387457_20	411461.DORFOR_00749	470.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0387457_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0387457_20	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0387457_21	K06909	223.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0387457_21	phrog_2	121.5	1.1e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0387457_21	UniRef90_A0A1C5QTK5	620.0	0	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0387457_21	411461.DORFOR_00750	599.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0387457_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0387457_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0387457_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0387457_21	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0387457_22	K07474	131.3	1.1e-38	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0387457_22	phrog_2606	292.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0387457_22	UniRef90_A0A6B4XMY8	295.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0387457_22	1415774.U728_838	295.0	0	terminase, small subunit	N/A
Pfam	UHGV-0387457_22	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0387457_22	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0387457_22	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0387457_22	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_23	phrog_36	51.0	0.000000000000022	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0387457_23	397290.C810_01391	80.9	4.13e-17	N/A	N/A
eggNOG-mapper	UHGV-0387457_25	397290.C810_01505	144.0	1.27518e-43	N/A	N/A
PHROG	UHGV-0387457_26	phrog_5051	139.9	1.29998e-41	N/A	unknown function
PHROG	UHGV-0387457_27	phrog_2118	119.6	2.6e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387457_27	UniRef90_UPI001A9B690D	194.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0387457_27	610130.Closa_0730	131.0	7.66e-38	HNH endonuclease	N/A
Pfam	UHGV-0387457_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0387457_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0387457_27	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_28	phrog_355	73.9	1.8e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387457_28	UniRef90_UPI0002D32D58	58.5	0.0000000186	N/A	N/A
eggNOG-mapper	UHGV-0387457_28	1095772.CAHH01000052_gene252	58.5	0.00000000313	N/A	N/A
Pfam	UHGV-0387457_28	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0387457_28	PF14359,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_29	phrog_15077	107.2	2.4e-31	N/A	unknown function
UniRef90	UHGV-0387457_29	UniRef90_A0A3E3IZW1	200.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387457_29	483218.BACPEC_01165	224.0	0	N/A	N/A
structural_annotation	UHGV-0387457_29	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_30	phrog_8470	300.6	0	N/A	unknown function
UniRef90	UHGV-0387457_30	UniRef90_UPI00164C094F	228.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0387457_30	483218.BACPEC_01166	404.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0387457_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0387457_30	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0387457_31	483218.BACPEC_01167	196.0	0	N/A	N/A
KOfam	UHGV-0387457_32	K03469	83.8	2.7e-24	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0387457_32	phrog_531	73.1	3.7e-21	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387457_32	UniRef90_A0A350VVB3	119.0	1.7e-31	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387457_32	665950.HMPREF1025_02551	83.6	1.83e-18	RNase H	N/A
Pfam	UHGV-0387457_32	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0387457_32	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0387457_32	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_33	phrog_3584	153.4	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0387457_33	483218.BACPEC_01173	283.0	0	N/A	N/A
structural_annotation	UHGV-0387457_33	PF21578,NF041486	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387457_36	UniRef90_UPI00117746F9	62.4	0.0000000000201	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0387457_36	1121289.JHVL01000079_gene1187	53.1	0.0000000151	Helix-turn-helix XRE-family like proteins	N/A
KOfam	UHGV-0387457_37	K07729	40.5	0.000000000053	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0387457_37	UniRef90_A0A356C6B4	117.0	1.46e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0387457_37	706433.HMPREF9430_01294	83.6	5.99e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0387457_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0387457_38	K22299	60.1	5.3e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0387457_38	phrog_8	70.6	2.9e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0387457_38	UniRef90_A0A413YU20	233.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0387457_38	553973.CLOHYLEM_07297	87.8	8.91e-21	Transcriptional	N/A
PADLOC	UHGV-0387457_38	retron_type_VI_hth_cluster2_1	53.2	0.0000000000000051	N/A	Retron
Pfam	UHGV-0387457_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0387457_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0387457_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_39	phrog_20936	42.9	0.0000000000086	N/A	unknown function
UniRef90	UHGV-0387457_39	UniRef90_A0A660M5N1	55.8	0.0000000105	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0387457_39	476272.RUMHYD_02825	52.8	0.000000113	N/A	N/A
structural_annotation	UHGV-0387457_39	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0387457_42	K14623	357.3	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0387457_42	phrog_8036	377.7	0	N/A	unknown function
UniRef90	UHGV-0387457_42	UniRef90_A0A3P3QSS9	419.0	0	DNA damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0387457_42	665950.HMPREF1025_02565	393.0	0	N/A	N/A
AcrCatalog	UHGV-0387457_42	cluster_17589	159.0	0	NA	N/A
PADLOC	UHGV-0387457_42	Specificity_I_00032	366.4	0	Type I specificity subunit	RM
Pfam	UHGV-0387457_42	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0387457_42	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0387457_42	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0387457_42	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0387457_43	K14623	81.8	9.2e-24	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0387457_43	phrog_15286	305.2	0	N/A	unknown function
UniRef90	UHGV-0387457_43	UniRef90_A0A3B9CIP2	343.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0387457_43	411459.RUMOBE_00965	290.0	0	N/A	N/A
Pfam	UHGV-0387457_43	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0387457_43	COG3617	N/A	N/A	Prophage antirepressor	N/A
KOfam	UHGV-0387457_44	K06400	371.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0387457_44	phrog_95	364.0	0	integrase	integration and excision
UniRef90	UHGV-0387457_44	UniRef90_A0A413YU13	840.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0387457_44	411462.DORLON_00823	453.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0387457_44	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0387457_44	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0387457_44	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0387457_44	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0387457_44	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0387457_45	K07273	89.2	6e-26	acm; lysozyme	N/A
PHROG	UHGV-0387457_45	phrog_291	80.7	2.3e-23	endolysin	lysis
UniRef90	UHGV-0387457_45	UniRef90_A0A174PB89	662.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0387457_45	1504823.CCMM01000012_gene1798	125.0	3.25e-30	lysozyme activity	N/A
Pfam	UHGV-0387457_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0387457_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0387457_45	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0387457_46	phrog_199	55.8	5.6e-16	holin	lysis
UniRef90	UHGV-0387457_46	UniRef90_A0A174PAV2	296.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-0387457_46	411470.RUMGNA_02086	172.0	0	N/A	N/A
Pfam	UHGV-0387457_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0387457_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0387457_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0387457_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0387457_48	K04763	218.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0387457_48	phrog_1	170.8	0	integrase	integration and excision
UniRef90	UHGV-0387457_48	UniRef90_UPI0011DD7E30	284.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0387457_48	33035.JPJF01000058_gene3673	259.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0387457_48	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0387457_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0387457_48	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0387457_48	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A