UHGV-0387495 (vOTU-062547)

Viral Genome: UHGV-0387495

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0387495
vOTU ID	vOTU-062547
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_3076
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9764
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.27
Jumbo phage	No

Genome content
Genome length (bp)	35,731
GC content	39.69%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	93%
Average CDS length (bps)	571.86
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0387495_2	UniRef90_UPI000834E818	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387495_2	1226322.HMPREF1545_00393	153.0	1.71939e-42	N/A	N/A
structural_annotation	UHGV-0387495_2	PF15931,MF_00194,NF001460,COG2974	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_3	phrog_36	62.6	7.1e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0387495_3	UniRef90_A0A3A5TMG5	168.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0387495_3	742723.HMPREF9477_00916	157.0	0	N/A	N/A
structural_annotation	UHGV-0387495_3	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_5	phrog_424	100.9	1.1e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0387495_5	UniRef90_C0CTA2	612.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0387495_5	33035.JPJF01000123_gene2435	649.0	0	N/A	N/A
Pfam	UHGV-0387495_5	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0387495_5	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0387495_5	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_6	phrog_98	56.7	4.4e-16	N/A	unknown function
UniRef90	UHGV-0387495_6	UniRef90_G5HEN9	123.0	3.51e-34	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0387495_6	742733.HMPREF9469_00912	123.0	5.9e-35	YopX protein	N/A
Pfam	UHGV-0387495_6	PF09643	N/A	N/A	YopX protein	YopX
PHROG	UHGV-0387495_8	phrog_59	46.3	0.00000000000041	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387495_8	UniRef90_R6WN60	315.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387495_8	1410650.JHWL01000037_gene604	130.0	1.51e-35	N/A	N/A
structural_annotation	UHGV-0387495_8	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_9	phrog_2289	65.9	5.7e-19	helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387495_9	UniRef90_A0A2Y9BHN6	121.0	2.53e-33	Loader and inhibitor of G40P protein	N/A
eggNOG-mapper	UHGV-0387495_9	585394.RHOM_14005	61.2	0.00000000061	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0387495_9	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
PHROG	UHGV-0387495_10	phrog_19658	136.7	4.19969e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387495_10	UniRef90_UPI001D090F0C	152.0	8.59977e-42	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0387495_10	796940.HMPREF9628_00167	179.0	0	N/A	N/A
COG	UHGV-0387495_10	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0387495_10	PF03444,MF_01911,TIGR01610,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_11	phrog_244	87.3	2e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387495_11	UniRef90_A0A136Q8L7	140.0	1.46996e-41	Putative holliday junction resolvase Hjc (Fragment)	N/A
eggNOG-mapper	UHGV-0387495_11	1280692.AUJL01000025_gene2095	148.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-0387495_11	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_13	phrog_7566	60.9	1.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-0387495_13	411470.RUMGNA_02194	258.0	0	N/A	N/A
PHROG	UHGV-0387495_14	phrog_659	55.5	6.8e-16	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387495_14	UniRef90_UPI001F180A96	355.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387495_14	33035.JPJF01000135_gene5082	283.0	0	N/A	N/A
Pfam	UHGV-0387495_14	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0387495_14	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0387495_15	1304866.K413DRAFT_3014	55.8	0.000000000553	N/A	N/A
UniRef90	UHGV-0387495_18	UniRef90_A0A894KJ06	61.2	0.0000000000545	Type II secretory pathway component PulF-like protein	N/A
structural_annotation	UHGV-0387495_20	PF10743,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_21	phrog_3240	95.9	3.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0387495_21	1158607.UAU_01711	99.4	1.81e-26	N/A	N/A
eggNOG-mapper	UHGV-0387495_22	861454.HMPREF9099_00337	56.2	0.000000000735	N/A	N/A
structural_annotation	UHGV-0387495_23	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
KOfam	UHGV-0387495_25	K18830	62.0	9e-18	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0387495_25	phrog_8	43.0	0.0000000000079	transcriptional regulator	transcription regulation
UniRef90	UHGV-0387495_25	UniRef90_UPI000677B37D	208.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0387495_25	1235798.C817_05486	136.0	1.09e-39	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0387495_25	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0387495_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0387495_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0387495_26	K07482	129.7	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0387495_26	phrog_4646	215.7	0	transposase	integration and excision
UniRef90	UHGV-0387495_26	UniRef90_C6JHV8	893.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0387495_26	457412.RSAG_03502	893.0	0	N/A	N/A
Pfam	UHGV-0387495_26	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0387495_26	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-0387495_26	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-0387495_26	PF07592,PF04218,NF033563,COG2826	N/A	N/A	N/A	N/A
KOfam	UHGV-0387495_27	K14059	74.1	2.8e-21	int; integrase	N/A
PHROG	UHGV-0387495_27	phrog_1	113.3	2.6e-33	integrase	integration and excision
UniRef90	UHGV-0387495_27	UniRef90_UPI0008DAC4F1	600.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0387495_27	1235798.C817_04751	415.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0387495_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0387495_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0387495_27	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0387495_28	K01448	78.7	7.8e-23	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0387495_28	phrog_435	141.6	6.89999e-42	endolysin	lysis
UniRef90	UHGV-0387495_28	UniRef90_A0A6N2UUF0	259.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-0387495_28	552396.HMPREF0863_00263	186.0	0	hmm pf01520	N/A
Pfam	UHGV-0387495_28	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0387495_28	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0387495_28	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_29	phrog_443	58.1	2.3e-16	holin	lysis
UniRef90	UHGV-0387495_29	UniRef90_UPI000C75746C	98.2	2.18e-25	holin	N/A
eggNOG-mapper	UHGV-0387495_29	1235802.C823_05612	89.4	1.27e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0387495_29	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0387495_29	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_30	phrog_937	49.2	0.000000000000092	hemolysin	other
PHROG	UHGV-0387495_31	phrog_1382	71.6	4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0387495_31	411468.CLOSCI_00272	79.0	5.97e-19	N/A	N/A
PHROG	UHGV-0387495_34	phrog_16164	231.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0387495_34	411470.RUMGNA_00122	57.0	0.00000753	N/A	N/A
structural_annotation	UHGV-0387495_34	PF10651,NF032891	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_35	phrog_1382	44.9	0.000000000001	N/A	unknown function
NCBIFam	UHGV-0387495_35	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0387495_35	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_36	phrog_30034	108.7	6.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-0387495_36	742723.HMPREF9477_00891	133.0	1.75e-38	N/A	N/A
structural_annotation	UHGV-0387495_36	PF17642	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_37	phrog_9994	171.6	0	N/A	unknown function
UniRef90	UHGV-0387495_37	UniRef90_UPI000C7605CE	270.0	0	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0387495_37	411468.CLOSCI_00275	114.0	3.48e-27	N/A	N/A
structural_annotation	UHGV-0387495_37	PF20747,NF012201	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_38	phrog_538	164.8	0	minor tail protein	tail
UniRef90	UHGV-0387495_38	UniRef90_UPI001D071BA3	301.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0387495_38	665950.HMPREF1025_02520	231.0	0	N/A	N/A
Pfam	UHGV-0387495_38	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0387495_38	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0387495_39	411461.DORFOR_01176	191.0	0	N/A	N/A
structural_annotation	UHGV-0387495_39	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_40	phrog_1272	232.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0387495_40	UniRef90_UPI000C7738DA	694.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0387495_40	428125.CLOLEP_00174	297.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0387495_40	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0387495_40	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0387495_40	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_41	phrog_706	164.2	0	N/A	unknown function
UniRef90	UHGV-0387495_41	UniRef90_UPI000C78ADA7	303.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0387495_41	1134413.ANNK01000120_gene2016	107.0	1.05e-26	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0387495_41	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0387495_41	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387495_42	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_43	phrog_820	112.3	2.9e-33	major tail protein	tail
UniRef90	UHGV-0387495_43	UniRef90_A0A3R6YSE8	221.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0387495_43	1231057.AMGD01000018_gene3613	75.9	0.00000000000000303	Belongs to the glycosyl hydrolase family 6	N/A
COG	UHGV-0387495_43	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387495_43	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_44	phrog_913	45.4	0.0000000000011	minor head protein	head and packaging
UniRef90	UHGV-0387495_44	UniRef90_UPI001D058B7D	178.0	0	minor capsid protein	N/A
structural_annotation	UHGV-0387495_44	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_45	phrog_556	68.0	1.3e-19	minor head protein	head and packaging
UniRef90	UHGV-0387495_45	UniRef90_UPI000C7679F4	217.0	0	minor capsid protein	N/A
Pfam	UHGV-0387495_45	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0387495_45	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_46	phrog_793	85.5	5e-25	head-tail adaptor	connector
UniRef90	UHGV-0387495_46	UniRef90_UPI000C77160F	149.0	8.40779e-45	putative minor capsid protein	N/A
eggNOG-mapper	UHGV-0387495_46	1161901.I1TLE5_9CAUD	51.6	0.000000611	Minor capsid protein	N/A
Pfam	UHGV-0387495_46	PF10665	N/A	N/A	Minor capsid protein	Minor_capsid_1
structural_annotation	UHGV-0387495_46	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_47	phrog_541	97.6	9.4e-29	head-tail adaptor	connector
UniRef90	UHGV-0387495_47	UniRef90_R5RS10	142.0	1.71995e-41	Protein gp8	N/A
eggNOG-mapper	UHGV-0387495_47	997296.PB1_16199	84.0	5.29e-19	N/A	N/A
PHROG	UHGV-0387495_48	phrog_267	92.5	3.5e-27	major head protein	head and packaging
UniRef90	UHGV-0387495_48	UniRef90_A0A0D8J2H9	244.0	0	p22 coat protein 5	N/A
eggNOG-mapper	UHGV-0387495_48	718252.FP2_06660	269.0	0	N/A	N/A
structural_annotation	UHGV-0387495_48	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_49	phrog_2303	94.7	2.3e-28	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0387495_49	1415775.U729_2604	52.8	0.00000833	N/A	N/A
KOfam	UHGV-0387495_50	K07584	87.7	1.5e-25	N/A	N/A
PHROG	UHGV-0387495_50	phrog_4478	86.5	1.9e-25	peptidase	other
UniRef90	UHGV-0387495_50	UniRef90_UPI000C7705CC	150.0	2.8026e-45	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0387495_50	476272.RUMHYD_02852	92.0	3.96e-23	Cysteine protease Prp	N/A
Pfam	UHGV-0387495_50	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0387495_50	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387495_50	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_51	phrog_13199	94.0	7.2e-28	N/A	unknown function
eggNOG-mapper	UHGV-0387495_51	476272.RUMHYD_02851	100.0	4.19e-27	N/A	N/A
PHROG	UHGV-0387495_52	phrog_355	60.5	2.3e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387495_52	UniRef90_A0A396KGT7	203.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387495_52	97138.C820_00250	129.0	1.38e-37	N/A	N/A
Pfam	UHGV-0387495_52	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0387495_52	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_53	phrog_15041	40.9	0.000000000027	N/A	unknown function
eggNOG-mapper	UHGV-0387495_53	1304866.K413DRAFT_0808	65.1	0.000000000000485	N/A	N/A
structural_annotation	UHGV-0387495_53	PF10827	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_54	phrog_581	321.9	0	minor head protein	head and packaging
UniRef90	UHGV-0387495_54	UniRef90_UPI00191552C0	763.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0387495_54	428125.CLOLEP_01802	266.0	0	N/A	N/A
Pfam	UHGV-0387495_54	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0387495_54	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387495_54	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_55	phrog_533	363.8	0	portal protein	head and packaging
UniRef90	UHGV-0387495_55	UniRef90_UPI000C79119B	796.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0387495_55	1120998.AUFC01000030_gene2232	399.0	0	N/A	N/A
Pfam	UHGV-0387495_55	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0387495_55	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0387495_56	K06909	130.1	2.2e-38	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0387495_56	phrog_2	138.7	6.59998e-41	terminase large subunit	head and packaging
UniRef90	UHGV-0387495_56	UniRef90_UPI0013563028	817.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0387495_56	592031.GCWU000322_00074	524.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0387495_56	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0387495_56	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0387495_56	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0387495_56	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0387495_57	phrog_2412	155.1	0	N/A	unknown function
UniRef90	UHGV-0387495_57	UniRef90_A0A4V1EFZ3	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387495_57	742723.HMPREF9477_00912	150.0	1.079e-43	N/A	N/A