UHGV-0388957 (vOTU-024355)

Viral Genome: UHGV-0388957

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0388957
vOTU ID	vOTU-024355
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_3400
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.33 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.8
Jumbo phage	No

Genome content
Genome length (bp)	34,063
GC content	53.40%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	56
CDS density	94%
Average CDS length (bps)	571.23
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 80.33)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0388957_1	phrog_27197	42.9	0.0000000000081	N/A	unknown function
eggNOG-mapper	UHGV-0388957_1	645991.Sgly_0315	103.0	1.5e-25	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0388957_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
eggNOG-mapper	UHGV-0388957_2	552398.HMPREF0866_03131	55.8	0.000000000783	N/A	N/A
PHROG	UHGV-0388957_3	phrog_424	85.9	5.5e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0388957_3	UniRef90_UPI0018774E0E	299.0	0	reductase	N/A
eggNOG-mapper	UHGV-0388957_3	1235835.C814_01169	291.0	0	N/A	N/A
COG	UHGV-0388957_3	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0388957_3	PF01507,NF006327	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388957_4	UniRef90_UPI001958DC75	93.6	1.04e-22	N/A	N/A
eggNOG-mapper	UHGV-0388957_4	665950.HMPREF1025_02540	70.5	0.000000000000349	N/A	N/A
structural_annotation	UHGV-0388957_4	PF04448	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388957_9	318464.IO99_07375	82.4	3.46e-19	N/A	N/A
PHROG	UHGV-0388957_10	phrog_2245	50.2	0.000000000000048	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0388957_10	NF001611,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_13	phrog_2657	184.0	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0388957_13	UniRef90_A0A374AXT0	319.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0388957_13	411490.ANACAC_00702	286.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-0388957_13	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0388957_13	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0388957_13	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0388957_13	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_15	phrog_1384	131.7	4.6e-39	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0388957_15	665956.HMPREF1032_03086	266.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0388957_15	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-0388957_16	K06909	124.6	1.1e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0388957_16	phrog_10250	170.1	0	N/A	unknown function
UniRef90	UHGV-0388957_16	UniRef90_A0A1C6J947	709.0	0	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0388957_16	1226322.HMPREF1545_00043	681.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0388957_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0388957_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0388957_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0388957_16	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_17	phrog_533	403.1	0	portal protein	head and packaging
UniRef90	UHGV-0388957_17	UniRef90_A0A2U1BEK0	777.0	0	A118 family predicted phage portal protein	N/A
eggNOG-mapper	UHGV-0388957_17	1226322.HMPREF1545_00044	763.0	0	N/A	N/A
Pfam	UHGV-0388957_17	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0388957_17	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_18	phrog_581	285.3	0	minor head protein	head and packaging
UniRef90	UHGV-0388957_18	UniRef90_UPI001D080D49	603.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0388957_18	1226322.HMPREF1545_00046	368.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0388957_18	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0388957_18	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0388957_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0388957_18	PF06152,PF15542	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388957_19	1226322.HMPREF1545_00049	110.0	1.6e-28	N/A	N/A
PHROG	UHGV-0388957_20	phrog_10	136.1	3.5e-40	major head protein	head and packaging
UniRef90	UHGV-0388957_20	UniRef90_U2SBS0	331.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0388957_20	1226322.HMPREF1545_00050	331.0	0	Phage capsid family	N/A
Pfam	UHGV-0388957_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0388957_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0388957_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0388957_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_21	phrog_541	88.7	4.9e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0388957_21	1120998.AUFC01000030_gene2237	57.0	0.0000000181	N/A	N/A
PHROG	UHGV-0388957_22	phrog_3366	108.0	6.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0388957_22	1226322.HMPREF1545_00053	237.0	0	N/A	N/A
structural_annotation	UHGV-0388957_22	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_23	phrog_556	76.6	2.3e-22	minor head protein	head and packaging
UniRef90	UHGV-0388957_23	UniRef90_A0A2U1BEM0	195.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0388957_23	1226322.HMPREF1545_00054	190.0	0	Minor capsid protein	N/A
Pfam	UHGV-0388957_23	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0388957_23	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_24	phrog_3266	56.2	5.7e-16	tail completion	connector
eggNOG-mapper	UHGV-0388957_24	1226322.HMPREF1545_00055	244.0	0	N/A	N/A
structural_annotation	UHGV-0388957_24	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_25	phrog_3099	91.2	1.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0388957_25	1232443.BAIA02000078_gene23	273.0	0	N/A	N/A
structural_annotation	UHGV-0388957_25	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_26	phrog_11299	87.7	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0388957_26	693746.OBV_18160	196.0	0	N/A	N/A
structural_annotation	UHGV-0388957_26	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_27	phrog_706	120.4	1.3e-35	N/A	unknown function
UniRef90	UHGV-0388957_27	UniRef90_UPI000682A80B	269.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0388957_27	693746.OBV_18170	256.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0388957_27	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0388957_27	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_28	phrog_1535	110.5	1.4e-35	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0388957_28	693746.OBV_18190	434.0	0	domain protein	N/A
COG	UHGV-0388957_28	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_29	phrog_1194	70.3	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0388957_29	1226322.HMPREF1545_00060	236.0	0	N/A	N/A
structural_annotation	UHGV-0388957_29	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_30	phrog_32744	662.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0388957_30	1120998.AUFC01000030_gene2247	237.0	0	N/A	N/A
structural_annotation	UHGV-0388957_30	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388957_32	UniRef90_UPI001C1090AB	111.0	1.02e-26	collagen-like protein	N/A
eggNOG-mapper	UHGV-0388957_32	1297617.JPJD01000099_gene2171	118.0	1.82e-28	Collagen triple helix repeat protein	N/A
COG	UHGV-0388957_32	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0388957_32	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_33	phrog_13589	44.8	1.7e-22	N/A	unknown function
eggNOG-mapper	UHGV-0388957_33	411471.SUBVAR_06929	336.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0388957_33	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0388957_38	phrog_4105	62.2	9e-18	N/A	unknown function
eggNOG-mapper	UHGV-0388957_38	1687.BCOR_0969	58.5	0.000000000893	N/A	N/A
PHROG	UHGV-0388957_39	phrog_13256	73.5	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0388957_39	1226322.HMPREF1545_00132	83.6	1.89e-20	N/A	N/A
KOfam	UHGV-0388957_41	K01448	118.5	7.5e-35	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0388957_41	phrog_435	117.3	1.5e-34	endolysin	lysis
UniRef90	UHGV-0388957_41	UniRef90_UPI001E4F8FA2	80.1	0.000000000000262	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0388957_41	1410668.JNKC01000001_gene1675	158.0	3.05063e-42	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0388957_41	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0388957_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0388957_41	PF01520,PF09992,PF01471,MF_00562,TIGR02883,COG0860,COG4632,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388957_42	UniRef90_U2R3E6	66.6	0.00000000000077	KORA domain-containing protein	N/A
structural_annotation	UHGV-0388957_42	PF16509,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_44	phrog_3754	103.1	2.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0388957_44	476272.RUMHYD_01764	181.0	0	N/A	N/A
PHROG	UHGV-0388957_45	phrog_21718	116.9	1.3e-34	N/A	unknown function
UniRef90	UHGV-0388957_45	UniRef90_A0A285PT36	67.0	0.0000000000472	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-0388957_45	397290.C810_05210	74.3	0.0000000000000143	N/A	N/A
PHROG	UHGV-0388957_46	phrog_22984	112.0	2.4e-33	N/A	unknown function
PHROG	UHGV-0388957_47	phrog_16490	225.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0388957_47	658655.HMPREF0988_00917	186.0	0	N/A	N/A
PHROG	UHGV-0388957_48	phrog_20016	172.8	0	N/A	unknown function
UniRef90	UHGV-0388957_48	UniRef90_A0A285PT46	161.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0388957_48	1226322.HMPREF1545_00077	146.0	3.13891e-43	N/A	N/A
structural_annotation	UHGV-0388957_48	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388957_49	476272.RUMHYD_01772	51.2	0.00000584	N/A	N/A
eggNOG-mapper	UHGV-0388957_50	1226322.HMPREF1545_00079	129.0	2.36e-37	N/A	N/A
KOfam	UHGV-0388957_51	K14059	219.7	0	int; integrase	N/A
PHROG	UHGV-0388957_51	phrog_1	214.0	0	integrase	integration and excision
UniRef90	UHGV-0388957_51	UniRef90_A0A1C5N3H1	564.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0388957_51	1321814.HMPREF9089_00905	204.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0388957_51	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0388957_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0388957_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0388957_51	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-0388957_52	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-0388957_53	phrog_87	81.2	1e-23	metallo-protease	other
UniRef90	UHGV-0388957_53	UniRef90_A0A1Y3RG05	206.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0388957_53	1007096.BAGW01000011_gene2354	138.0	5.59e-40	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0388957_53	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0388957_53	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0388957_53	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0388957_54	phrog_8	62.8	7.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0388957_54	UniRef90_A0A1Y3RHT3	156.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0388957_54	1160721.RBI_I01471	96.7	2.83e-24	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0388957_54	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
structural_annotation	UHGV-0388957_54	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0388957_55	UniRef90_A0A845R4W0	112.0	5.84e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0388957_55	742738.HMPREF9460_02486	73.2	3.59e-16	N/A	N/A
structural_annotation	UHGV-0388957_55	PF13443,NF000090,COG1813	N/A	N/A	N/A	N/A