UHGV-0388985 (vOTU-052184)

Viral Genome: UHGV-0388985

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0388985
vOTU ID	vOTU-052184
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_3195
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9776
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.79
Jumbo phage	No

Genome content
Genome length (bp)	35,019
GC content	44.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	92%
Average CDS length (bps)	586.36
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0388985_1	658655.HMPREF0988_02587	52.4	0.00000121	N/A	N/A
PHROG	UHGV-0388985_2	phrog_155	138.1	5.60001e-41	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388985_2	UniRef90_R6QUE1	381.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0388985_2	1298920.KI911353_gene4870	192.0	0	ERF superfamily	N/A
Pfam	UHGV-0388985_2	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0388985_2	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_3	phrog_72	52.3	0.0000000000000061	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0388985_3	411490.ANACAC_00804	337.0	0	N/A	N/A
structural_annotation	UHGV-0388985_3	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_4	phrog_7566	93.0	1.9e-27	N/A	unknown function
UniRef90	UHGV-0388985_4	UniRef90_A0A3R6TI62	72.8	0.00000000000000957	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0388985_4	508419.F8J187_9CAUD	94.7	3.05e-24	N/A	N/A
PHROG	UHGV-0388985_5	phrog_244	80.4	2.8e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0388985_5	411490.ANACAC_00802	208.0	0	N/A	N/A
structural_annotation	UHGV-0388985_5	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_6	phrog_15768	107.3	1.8e-31	N/A	unknown function
UniRef90	UHGV-0388985_6	UniRef90_UPI001C1E0E19	141.0	6.8e-39	GntR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0388985_6	886379.AEWI01000001_gene1766	124.0	4.29e-33	N/A	N/A
AcrCatalog	UHGV-0388985_6	cluster_14472	67.4	0.0000000000000012	NA	N/A
structural_annotation	UHGV-0388985_6	PF08222	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0388985_7	PF07106,MF_01909,TIGR02719,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_8	phrog_151	44.0	0.0000000000018	transposase	integration and excision
UniRef90	UHGV-0388985_8	UniRef90_A0A374AGS2	67.4	0.00000000000519	Transposase	N/A
Pfam	UHGV-0388985_8	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
Pfam	UHGV-0388985_8	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0388985_8	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-0388985_10	phrog_15198	40.3	0.00000000005	N/A	unknown function
UniRef90	UHGV-0388985_10	UniRef90_A0A2K2TVU4	100.0	4.27e-25	N/A	N/A
Pfam	UHGV-0388985_10	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0388985_11	phrog_9642	40.7	0.000000000028	N/A	unknown function
PHROG	UHGV-0388985_12	phrog_10714	58.8	8.8e-17	N/A	unknown function
UniRef90	UHGV-0388985_12	UniRef90_R5R2P7	75.5	0.00000000000000151	DNA polymerase II large subunit	N/A
eggNOG-mapper	UHGV-0388985_12	537007.BLAHAN_05460	99.8	5.69e-26	N/A	N/A
PHROG	UHGV-0388985_13	phrog_2776	72.2	3.7e-21	N/A	unknown function
UniRef90	UHGV-0388985_13	UniRef90_A0A5S4VR73	234.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0388985_13	411490.ANACAC_00794	283.0	0	N/A	N/A
structural_annotation	UHGV-0388985_13	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_16	phrog_14105	192.8	0	N/A	unknown function
UniRef90	UHGV-0388985_16	UniRef90_A0A1C5VVX1	224.0	0	PPE-repeat proteins	N/A
eggNOG-mapper	UHGV-0388985_16	97138.C820_00368	171.0	0	PPE family	N/A
Pfam	UHGV-0388985_16	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0388985_16	COG5651	N/A	N/A	PPE-repeat protein	N/A
PHROG	UHGV-0388985_17	phrog_986	79.5	3.4e-23	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0388985_17	UniRef90_UPI001CD7230E	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-0388985_17	908340.HMPREF9406_2594	76.3	7.3e-16	N/A	N/A
Pfam	UHGV-0388985_17	PF12961	N/A	N/A	N/A	DUF3850
PHROG	UHGV-0388985_18	phrog_36	69.8	4.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0388985_18	UniRef90_R6ZAS5	137.0	2.07e-38	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0388985_18	411490.ANACAC_00789	244.0	0	N/A	N/A
structural_annotation	UHGV-0388985_18	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0388985_19	K07474	108.7	9.5e-32	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0388985_19	phrog_51	128.4	4.5e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0388985_19	UniRef90_A0A1H3HDL4	173.0	0	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0388985_19	585501.HMPREF6123_0844	142.0	3.25998e-41	Terminase small subunit	N/A
Pfam	UHGV-0388985_19	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0388985_19	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0388985_19	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0388985_20	K06909	100.7	1.9e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0388985_20	phrog_2	70.1	4.7e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0388985_20	UniRef90_UPI0011C955E7	911.0	0	terminase	N/A
eggNOG-mapper	UHGV-0388985_20	742740.HMPREF9474_03500	790.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0388985_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0388985_20	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_22	phrog_533	270.7	0	portal protein	head and packaging
UniRef90	UHGV-0388985_22	UniRef90_UPI001F4611C3	944.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0388985_22	1298920.KI911353_gene4855	744.0	0	N/A	N/A
structural_annotation	UHGV-0388985_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_23	phrog_581	324.4	0	minor head protein	head and packaging
UniRef90	UHGV-0388985_23	UniRef90_UPI001F2D248E	909.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0388985_23	86416.Clopa_0572	419.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0388985_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0388985_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0388985_23	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388985_24	903814.ELI_3212	63.9	0.000000000000452	N/A	N/A
PHROG	UHGV-0388985_25	phrog_419	102.4	4.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-0388985_25	768486.EHR_02665	99.8	1.28e-24	N/A	N/A
structural_annotation	UHGV-0388985_25	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_26	phrog_2303	143.3	1.60028e-42	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0388985_26	742740.HMPREF9474_03504	185.0	0	N/A	N/A
PHROG	UHGV-0388985_27	phrog_422	353.4	0	major head protein	head and packaging
UniRef90	UHGV-0388985_27	UniRef90_UPI0011CB170D	583.0	0	capsid protein	N/A
eggNOG-mapper	UHGV-0388985_27	742740.HMPREF9474_03505	517.0	0	N/A	N/A
structural_annotation	UHGV-0388985_27	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_28	phrog_1378	74.3	1.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0388985_28	742740.HMPREF9474_03506	79.3	2.62e-18	N/A	N/A
PHROG	UHGV-0388985_29	phrog_541	85.9	4e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0388985_29	1304866.K413DRAFT_0783	212.0	0	N/A	N/A
PHROG	UHGV-0388985_30	phrog_8710	143.2	5.99756e-43	N/A	unknown function
eggNOG-mapper	UHGV-0388985_30	1304866.K413DRAFT_0782	156.0	0	N/A	N/A
structural_annotation	UHGV-0388985_30	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_31	phrog_556	64.1	2e-18	minor head protein	head and packaging
UniRef90	UHGV-0388985_31	UniRef90_UPI001D4D3E00	167.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0388985_31	1294142.CINTURNW_1033	162.0	0	N/A	N/A
PHROG	UHGV-0388985_32	phrog_2595	94.4	9.5e-28	head-tail connector protein	connector
UniRef90	UHGV-0388985_32	UniRef90_UPI0011CC909E	274.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0388985_32	394503.Ccel_3039	175.0	0	N/A	N/A
Pfam	UHGV-0388985_32	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0388985_32	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_33	phrog_820	115.0	4.4e-34	major tail protein	tail
eggNOG-mapper	UHGV-0388985_33	1298920.KI911353_gene4844	220.0	0	N/A	N/A
structural_annotation	UHGV-0388985_33	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_34	phrog_8300	71.2	1.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0388985_34	195103.CPF_0963	75.1	6.9e-16	N/A	N/A
structural_annotation	UHGV-0388985_34	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_35	phrog_1535	621.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0388985_35	UniRef90_UPI0003F4F1A1	459.0	0	membrane protein	N/A
eggNOG-mapper	UHGV-0388985_35	1391647.AVSV01000003_gene1817	459.0	0	phage tail tape measure protein	N/A
COG	UHGV-0388985_35	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_36	phrog_1194	96.2	2.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0388985_36	1499683.CCFF01000017_gene2921	64.7	0.0000000000117	N/A	N/A
Pfam	UHGV-0388985_36	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0388985_36	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_37	phrog_6616	512.2	0	tail protein	tail
UniRef90	UHGV-0388985_37	UniRef90_A0A0J1FXD9	367.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0388985_37	1121866.AUGK01000003_gene1439	314.0	0	Phage minor structural protein	N/A
COG	UHGV-0388985_37	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0388985_37	PF05954,PF16532,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0388985_38	1304866.K413DRAFT_3051	57.0	0.000000319	N/A	N/A
UniRef90	UHGV-0388985_40	UniRef90_A0A4R4FF68	146.0	7.14662e-44	CTP synthase	N/A
eggNOG-mapper	UHGV-0388985_40	411490.ANACAC_00705	163.0	0	N/A	N/A
PHROG	UHGV-0388985_41	phrog_1129	84.5	6.8e-25	holin	lysis
UniRef90	UHGV-0388985_41	UniRef90_UPI00040FA29A	104.0	1.58e-27	phage holin family protein	N/A
eggNOG-mapper	UHGV-0388985_41	1123075.AUDP01000020_gene1532	104.0	2.65e-28	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0388985_41	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0388985_41	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0388985_42	K01448	98.0	1.1e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0388985_42	phrog_435	170.3	0	endolysin	lysis
UniRef90	UHGV-0388985_42	UniRef90_UPI001D075019	551.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0388985_42	411461.DORFOR_01187	245.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0388985_42	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0388985_42	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0388985_42	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0388985_42	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
KOfam	UHGV-0388985_43	K14059	191.9	0	int; integrase	N/A
PHROG	UHGV-0388985_43	phrog_1	188.2	0	integrase	integration and excision
UniRef90	UHGV-0388985_43	UniRef90_A0A374AGM3	764.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0388985_43	411902.CLOBOL_02558	509.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0388985_43	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0388985_43	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0388985_43	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0388985_43	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0388985_43	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_44	phrog_31229	124.5	5e-37	N/A	unknown function
eggNOG-mapper	UHGV-0388985_44	1121333.JMLH01000001_gene1904	141.0	3.99931e-42	N/A	N/A
PHROG	UHGV-0388985_45	phrog_215	55.1	1e-21	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0388985_45	UniRef90_UPI0011CB643E	637.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0388985_45	445971.ANASTE_01207	242.0	0	Bacterial Ig-like domain (group 2)	N/A
Pfam	UHGV-0388985_45	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
PHROG	UHGV-0388985_46	phrog_87	88.1	7.1e-26	metallo-protease	other
UniRef90	UHGV-0388985_46	UniRef90_A0A374AHF7	263.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0388985_46	484770.UFO1_1662	140.0	5.48006e-41	N/A	N/A
Pfam	UHGV-0388985_46	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0388985_46	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0388985_46	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0388985_47	K22300	62.6	8.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0388985_47	phrog_2967	57.0	3.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0388985_47	UniRef90_A0A374AIQ4	280.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0388985_47	574375.BAGA_00345	105.0	7.2e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0388985_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0388985_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0388985_47	PF12844,MF_00584,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0388985_48	K07729	50.4	0.000000000000051	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0388985_48	phrog_8	47.5	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0388985_48	UniRef90_A0A374AJ47	154.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0388985_48	653386.HMPREF0975_00705	53.1	0.0000000272	Helix-turn-helix domain	N/A
Pfam	UHGV-0388985_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0388985_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0388985_48	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_49	phrog_463	231.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-0388985_49	UniRef90_UPI0011C6F9AC	459.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0388985_49	411490.ANACAC_00813	363.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0388985_49	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0388985_49	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0388985_49	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0388985_49	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_50	phrog_31760	51.2	0.000000000000014	N/A	unknown function
UniRef90	UHGV-0388985_52	UniRef90_A0A374AJZ5	122.0	2.38e-35	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0388985_52	478749.BRYFOR_07577	75.9	2.16e-17	Helix-turn-helix domain	N/A
Pfam	UHGV-0388985_52	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0388985_52	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0388985_53	phrog_2600	103.1	3.4e-30	N/A	unknown function
eggNOG-mapper	UHGV-0388985_53	1415774.U728_3767	115.0	1.4e-28	N/A	N/A
PHROG	UHGV-0388985_55	phrog_674	142.2	3.99931e-42	N/A	unknown function
UniRef90	UHGV-0388985_55	UniRef90_UPI001D03D9A7	150.0	7.2307e-43	N/A	N/A
eggNOG-mapper	UHGV-0388985_55	1121441.AUCX01000014_gene537	125.0	1.24e-32	N/A	N/A
Pfam	UHGV-0388985_55	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0388985_55	PF07083	N/A	N/A	N/A	N/A