UHGV-0389563 (vOTU-157469)

Viral Genome: UHGV-0389563

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0389563
vOTU ID	vOTU-157469
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_3987
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9738
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.22
Jumbo phage	No

Genome content
Genome length (bp)	29,879
GC content	39.67%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	97%
Average CDS length (bps)	687.64
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0389563_1	phrog_5110	106.8	9.1e-32	terminase small subunit	head and packaging
UniRef90	UHGV-0389563_1	UniRef90_A0A1M6MVK9	115.0	3.61e-31	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0389563_1	610130.Closa_0740	139.0	1.65003e-41	N/A	N/A
Pfam	UHGV-0389563_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0389563_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_2	phrog_9	242.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0389563_2	UniRef90_A0A2N5NUK9	952.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0389563_2	610130.Closa_0741	874.0	0	Phage Terminase	N/A
Pfam	UHGV-0389563_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0389563_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0389563_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0389563_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_3	phrog_12	124.5	6.4e-37	portal protein	head and packaging
UniRef90	UHGV-0389563_3	UniRef90_A0A4V2UQ51	575.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-0389563_3	610130.Closa_0742	483.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0389563_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0389563_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0389563_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0389563_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0389563_4	K01358	106.8	2.6e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0389563_4	phrog_94	183.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0389563_4	UniRef90_A0A6N3GKE0	355.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0389563_4	610130.Closa_0743	350.0	0	Clp protease	N/A
Pfam	UHGV-0389563_4	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0389563_4	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0389563_4	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_5	phrog_10	149.6	1.96182e-44	major head protein	head and packaging
UniRef90	UHGV-0389563_5	UniRef90_A0A4R3JAF4	709.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-0389563_5	1235792.C808_00086	595.0	0	Phage capsid family	N/A
Pfam	UHGV-0389563_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0389563_5	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0389563_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0389563_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0389563_5	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_6	phrog_749	66.9	2.5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0389563_6	1235792.C808_00087	105.0	1.86e-28	N/A	N/A
PHROG	UHGV-0389563_7	phrog_19734	52.7	0.0000000000000046	N/A	unknown function
eggNOG-mapper	UHGV-0389563_7	610130.Closa_0746	94.7	1.21e-23	N/A	N/A
structural_annotation	UHGV-0389563_7	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_8	phrog_5	56.1	0.000000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0389563_8	UniRef90_UPI00082989AC	93.6	3.18e-22	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0389563_8	1123263.AUKY01000027_gene842	93.2	8.21e-23	N/A	N/A
Pfam	UHGV-0389563_8	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0389563_8	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_9	phrog_78	44.6	0.0000000000012	tail terminator	connector
eggNOG-mapper	UHGV-0389563_9	610130.Closa_0748	136.0	2.77e-40	N/A	N/A
structural_annotation	UHGV-0389563_9	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_10	phrog_88	158.4	0	major tail protein	tail
UniRef90	UHGV-0389563_10	UniRef90_A0A1C5W5R6	250.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0389563_10	411471.SUBVAR_05857	226.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0389563_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0389563_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_11	phrog_709	122.0	2.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0389563_11	1120978.KB894081_gene116	126.0	1.11e-35	N/A	N/A
structural_annotation	UHGV-0389563_11	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_12	phrog_3033	40.2	0.000000000049	N/A	unknown function
eggNOG-mapper	UHGV-0389563_12	1341157.RF007C_02605	48.1	0.000000535	N/A	N/A
PHROG	UHGV-0389563_13	phrog_23464	127.1	0	N/A	unknown function
UniRef90	UHGV-0389563_13	UniRef90_A0A1C6H5M9	358.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0389563_13	33035.JPJF01000023_gene3232	288.0	0	phage tail tape measure protein	N/A
COG	UHGV-0389563_13	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0389563_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_14	phrog_33	88.1	1.7e-25	distal tail protein Dit	tail
UniRef90	UHGV-0389563_14	UniRef90_A0A1C5W6B6	196.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0389563_14	1497679.EP56_07715	105.0	8.63e-25	tail component	N/A
COG	UHGV-0389563_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0389563_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_15	phrog_1067	354.0	0	minor head protein	head and packaging
UniRef90	UHGV-0389563_15	UniRef90_UPI0002E008E0	241.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0389563_15	1123263.AUKY01000068_gene489	399.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0389563_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0389563_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0389563_15	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0389563_17	phrog_16164	129.4	1.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0389563_17	411470.RUMGNA_00122	79.3	0.00000000000374	N/A	N/A
structural_annotation	UHGV-0389563_17	PF17813,NF032891	N/A	N/A	N/A	N/A
UniRef90	UHGV-0389563_18	UniRef90_UPI000CF98EC1	58.9	0.000000121	sugar-binding protein	N/A
eggNOG-mapper	UHGV-0389563_18	1203606.HMPREF1526_01926	79.0	0.0000000000000012	N/A	N/A
PHROG	UHGV-0389563_19	phrog_937	65.9	6.1e-19	hemolysin	other
eggNOG-mapper	UHGV-0389563_19	478749.BRYFOR_07561	109.0	6.16e-30	N/A	N/A
PHROG	UHGV-0389563_20	phrog_443	55.6	0.0000000000000014	holin	lysis
UniRef90	UHGV-0389563_20	UniRef90_UPI000BA3B743	109.0	5.48e-30	holin	N/A
eggNOG-mapper	UHGV-0389563_20	476272.RUMHYD_01759	94.0	1.99e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0389563_20	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0389563_20	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0389563_21	K01448	61.8	1.1e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0389563_21	phrog_2742	72.2	6.4e-21	endolysin	lysis
UniRef90	UHGV-0389563_21	UniRef90_A0A416MN83	254.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0389563_21	478749.BRYFOR_07564	113.0	1.23e-24	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0389563_21	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0389563_21	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0389563_21	COG3087	N/A	N/A	Cell division protein FtsN	N/A
structural_annotation	UHGV-0389563_21	PF01520,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0389563_22	K14059	110.4	2.7e-32	int; integrase	N/A
PHROG	UHGV-0389563_22	phrog_1	117.5	1.3e-34	integrase	integration and excision
UniRef90	UHGV-0389563_22	UniRef90_A0A4P6LSD6	431.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0389563_22	478749.BRYFOR_05407	343.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0389563_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0389563_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0389563_22	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_23	phrog_9336	61.9	1.2e-17	N/A	unknown function
UniRef90	UHGV-0389563_23	UniRef90_A0A1Q6T359	103.0	2.92e-23	N/A	N/A
eggNOG-mapper	UHGV-0389563_23	742723.HMPREF9477_00941	118.0	2.26e-28	dextransucrase activity	N/A
Pfam	UHGV-0389563_23	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0389563_23	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0389563_23	PF14020	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_25	phrog_2967	52.1	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0389563_25	UniRef90_A0A396QPY6	194.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0389563_25	476272.RUMHYD_03305	90.1	1.55e-20	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0389563_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0389563_25	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0389563_25	PF08667,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0389563_26	K22300	58.1	2.1e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0389563_26	phrog_1373	51.0	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0389563_26	UniRef90_A0A396QFT7	112.0	1.92e-31	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0389563_26	1256908.HMPREF0373_00646	67.4	0.0000000000000353	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0389563_26	retron_type_VI_hth_cluster2_1	48.0	0.00000000000039	N/A	Retron
Pfam	UHGV-0389563_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0389563_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0389563_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0389563_27	K07741	46.9	0.00000000000082	antB; anti-repressor protein	N/A
PHROG	UHGV-0389563_27	phrog_463	270.3	0	anti-repressor	transcription regulation
UniRef90	UHGV-0389563_27	UniRef90_A0A315ZVR8	300.0	0	BRO family protein	N/A
eggNOG-mapper	UHGV-0389563_27	596315.HMPREF0634_0237	206.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-0389563_27	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0389563_27	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0389563_27	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0389563_27	PF10552,PF09669,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0389563_28	PF13560,MF_00535,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_29	phrog_23451	68.0	9.9e-20	N/A	unknown function
UniRef90	UHGV-0389563_29	UniRef90_C0DAL7	77.8	1.62e-17	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0389563_29	1235792.C808_01237	78.2	1.44e-17	N/A	N/A
Pfam	UHGV-0389563_29	PF18789	N/A	N/A	Defence against restriction A C-terminal	DarA_C
structural_annotation	UHGV-0389563_29	PF18789	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0389563_32	1304866.K413DRAFT_3014	56.2	0.000000000458	N/A	N/A
PHROG	UHGV-0389563_34	phrog_253	111.8	5.5e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0389563_34	UniRef90_A0A6N2UDN3	129.0	3.81e-35	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0389563_34	1256908.HMPREF0373_00657	108.0	8.17e-28	Siphovirus Gp157	N/A
Pfam	UHGV-0389563_34	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0389563_34	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_35	phrog_14970	259.5	0	N/A	unknown function
UniRef90	UHGV-0389563_35	UniRef90_A0A3P6JH63	216.0	0	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-0389563_35	411470.RUMGNA_02193	241.0	0	double-strand break repair protein	N/A
COG	UHGV-0389563_35	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0389563_35	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_36	phrog_72	51.3	0.000000000000018	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0389563_36	411490.ANACAC_00804	139.0	4.26e-39	N/A	N/A
structural_annotation	UHGV-0389563_36	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_37	phrog_7566	53.2	0.0000000000000042	N/A	unknown function
UniRef90	UHGV-0389563_37	UniRef90_A0A373CFM5	104.0	3.72e-27	ClpX-type ZB domain-containing protein	N/A
eggNOG-mapper	UHGV-0389563_37	1304866.K413DRAFT_3017	107.0	6.78e-29	N/A	N/A
KOfam	UHGV-0389563_38	K01160	58.0	2.7e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0389563_38	phrog_1682	78.3	1.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0389563_38	UniRef90_A0A6N7WNE3	171.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0389563_38	1235790.C805_00029	125.0	1.74e-35	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0389563_38	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0389563_38	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0389563_38	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0389563_39	phrog_5708	215.9	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0389563_39	UniRef90_UPI00164D8A5B	267.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0389563_39	931626.Awo_c31180	223.0	0	DnaD domain protein	N/A
COG	UHGV-0389563_39	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0389563_39	PF09681,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0389563_41	K23144	42.1	0.00000000001	K23144; UDP-N-acetylglucosamine diphosphorylase / glucose-1-phosphate thymidylyltransferase / UDP-N-acetylgalactosamine diphosphorylase / glucosamine-1-phosphate N-acetyltransferase / galactosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.7.7.24 2.7.7.83 2.3.1.157 2.3.1.276]	N/A
PHROG	UHGV-0389563_41	phrog_5070	152.8	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0389563_41	UniRef90_A0A174CB23	125.0	2.66e-32	Predicted acyltransferase	N/A
eggNOG-mapper	UHGV-0389563_41	411470.RUMGNA_02189	121.0	8.12e-32	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0389563_41	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A