UHGV-0389775 (vOTU-077685)

Viral Genome: UHGV-0389775

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0389775
vOTU ID	vOTU-077685
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_2881
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9783
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.45
Jumbo phage	No

Genome content
Genome length (bp)	36,817
GC content	45.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	92%
Average CDS length (bps)	586.66
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0389775_2	phrog_144	60.9	1.9e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0389775_2	UniRef90_A0A7G9G6Z8	236.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0389775_2	1304866.K413DRAFT_1217	213.0	0	HNH nucleases	N/A
UniRef90	UHGV-0389775_3	UniRef90_A0A3A6K7U9	78.6	5.78e-18	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0389775_3	610130.Closa_1388	105.0	1.25e-29	N/A	N/A
structural_annotation	UHGV-0389775_3	NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_5	phrog_36	63.0	5.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0389775_5	UniRef90_A0A174EB71	139.0	1.31e-39	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	N/A
eggNOG-mapper	UHGV-0389775_5	1123075.AUDP01000020_gene1515	117.0	2.17e-31	sigma factor activity	N/A
COG	UHGV-0389775_5	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0389775_5	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0389775_7	cluster_8997	138.0	1.4013e-45	NA	N/A
AcrCatalog	UHGV-0389775_8	cluster_73941	69.7	3.7e-19	NA	N/A
PHROG	UHGV-0389775_9	phrog_864	225.1	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0389775_9	UniRef90_A0A0J9EA35	1217.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0389775_9	1232453.BAIF02000002_gene1283	1171.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-0389775_9	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-0389775_9	PF19263	N/A	N/A	N/A	DUF5906
NCBIFam	UHGV-0389775_9	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-0389775_9	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0389775_9	PF08706,PF05272,PF19898,MF_00974,MF_00016,NF005477,COG3378	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0389775_10	243164.DET1099	153.0	0	N/A	N/A
PHROG	UHGV-0389775_13	phrog_16724	74.1	1.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0389775_13	1084719.G3MBK2_9CAUD	75.1	2.84e-16	endonuclease activity	N/A
KOfam	UHGV-0389775_15	K04769	74.3	2.3e-21	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	N/A
PHROG	UHGV-0389775_15	phrog_4681	61.7	7e-18	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0389775_15	UniRef90_A0A174WY28	178.0	0	AbrB family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0389775_15	1298920.KI911353_gene2736	94.7	4.46e-24	SpoVT / AbrB like domain	N/A
Pfam	UHGV-0389775_15	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0389775_15	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0389775_15	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0389775_15	PF02381,TIGR01439,COG2002	N/A	N/A	N/A	N/A
KOfam	UHGV-0389775_21	K22300	47.9	0.00000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0389775_21	phrog_6058	77.9	4.3e-23	N/A	unknown function
UniRef90	UHGV-0389775_21	UniRef90_C0DAL4	120.0	3.08e-32	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0389775_21	1449343.JQLQ01000002_gene686	96.3	9.32e-24	N/A	N/A
Pfam	UHGV-0389775_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0389775_21	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0389775_22	411468.CLOSCI_00322	48.9	0.000000479	N/A	N/A
PHROG	UHGV-0389775_23	phrog_373	115.7	3.9e-34	anti-repressor	transcription regulation
UniRef90	UHGV-0389775_23	UniRef90_A0A6M5GCK2	211.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-0389775_23	1151292.QEW_0741	213.0	0	N/A	N/A
Pfam	UHGV-0389775_23	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0389775_23	PF10552	N/A	N/A	ORF6C domain	ORF6C
structural_annotation	UHGV-0389775_23	PF10552,PF10543,TIGR02681,COG3943	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_24	phrog_6329	104.1	1.1e-30	N/A	unknown function
UniRef90	UHGV-0389775_24	UniRef90_A0A174WZW0	228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0389775_24	279010.BL03487	92.4	2.82e-19	N/A	N/A
KOfam	UHGV-0389775_25	K22300	62.6	8.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0389775_25	phrog_8	50.4	0.000000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-0389775_25	UniRef90_A0A6N7WRP8	148.0	1.16308e-43	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0389775_25	903814.ELI_1263	131.0	7.44e-38	Helix-turn-helix domain	N/A
Pfam	UHGV-0389775_25	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0389775_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0389775_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0389775_27	K14059	125.6	7.3e-37	int; integrase	N/A
PHROG	UHGV-0389775_27	phrog_1	162.8	0	integrase	integration and excision
UniRef90	UHGV-0389775_27	UniRef90_UPI001D125675	446.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0389775_27	742740.HMPREF9474_02388	428.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0389775_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0389775_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0389775_27	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_29	phrog_524	81.1	2.1e-23	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0389775_29	UniRef90_A0A413LX45	371.0	0	P22_AR_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0389775_29	397290.C810_01429	151.0	1.55544e-43	P22_AR N-terminal domain	N/A
Pfam	UHGV-0389775_29	PF10547	N/A	N/A	P22_AR N-terminal domain	P22_AR_N
structural_annotation	UHGV-0389775_29	PF10547,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0389775_31	UniRef90_UPI000B82F4E5	59.7	0.000000000215	polyprenyl synthetase solanesyl diphosphate synthase	N/A
eggNOG-mapper	UHGV-0389775_31	1304866.K413DRAFT_3062	107.0	5.29e-30	N/A	N/A
structural_annotation	UHGV-0389775_31	PF20063,TIGR01764	N/A	N/A	N/A	N/A
UniRef90	UHGV-0389775_32	UniRef90_A0A0J9BHU9	223.0	0	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-0389775_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0389775_34	K18830	50.5	0.000000000000051	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0389775_34	phrog_8	69.4	7.8e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0389775_34	UniRef90_A0A6N3EBQ0	143.0	3.29305e-43	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-0389775_34	641112.ACOK01000111_gene1877	99.0	1.78e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0389775_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0389775_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0389775_34	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_35	phrog_6745	87.7	1.1e-25	endolysin	lysis
UniRef90	UHGV-0389775_35	UniRef90_A0A6N3EAD2	500.0	0	Autolysin	N/A
eggNOG-mapper	UHGV-0389775_35	1304866.K413DRAFT_4748	124.0	1.04e-30	N/A	N/A
Pfam	UHGV-0389775_35	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
PHROG	UHGV-0389775_36	phrog_1129	69.0	4.7e-20	holin	lysis
UniRef90	UHGV-0389775_36	UniRef90_A0A416MDZ9	137.0	9.88994e-41	Enolase	N/A
eggNOG-mapper	UHGV-0389775_36	742740.HMPREF9474_03522	133.0	1.03e-39	N/A	N/A
Pfam	UHGV-0389775_36	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0389775_36	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0389775_37	742733.HMPREF9469_01798	124.0	4.75e-36	N/A	N/A
eggNOG-mapper	UHGV-0389775_39	931276.Cspa_c27110	49.3	0.000000431	N/A	N/A
PHROG	UHGV-0389775_40	phrog_19280	47.0	0.00000000000013	N/A	unknown function
UniRef90	UHGV-0389775_40	UniRef90_A0A174NC72	959.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0389775_40	742733.HMPREF9469_00973	166.0	3.28e-39	N/A	N/A
Pfam	UHGV-0389775_40	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0389775_40	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_43	phrog_30220	44.2	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0389775_43	610130.Closa_0859	59.7	0.000000941	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0389775_43	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0389775_44	phrog_7064	82.8	2.6e-24	tail protein	tail
UniRef90	UHGV-0389775_44	UniRef90_R6DQ52	263.0	0	Putative phage protein	N/A
structural_annotation	UHGV-0389775_44	PF14594,NF033848,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_45	phrog_33	43.3	0.0000000000067	distal tail protein Dit	tail
UniRef90	UHGV-0389775_45	UniRef90_A0A7L6N6H0	89.4	2.96e-17	Phage baseplate protein	N/A
eggNOG-mapper	UHGV-0389775_45	1499968.TCA2_2010	56.6	0.00000187	Phage tail protein	N/A
Pfam	UHGV-0389775_45	PF16774	N/A	N/A	Distal tail protein, N-terminal domain	Dit_N
COG	UHGV-0389775_45	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0389775_45	PF16774,PF20753,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0389775_46	K20283	50.3	1.2e-16	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0389775_46	phrog_1533	533.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0389775_46	UniRef90_UPI001897A3BE	1247.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0389775_46	1304866.K413DRAFT_1234	867.0	0	tail tape measure protein	N/A
Pfam	UHGV-0389775_46	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0389775_46	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0389775_46	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0389775_46	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_47	phrog_3033	70.8	1.4e-20	N/A	unknown function
UniRef90	UHGV-0389775_47	UniRef90_D9R5H0	92.4	1.02e-23	Phage-like protein	N/A
eggNOG-mapper	UHGV-0389775_47	610130.Closa_0751	92.4	1.72e-24	N/A	N/A
PHROG	UHGV-0389775_48	phrog_709	113.8	5.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0389775_48	1304866.K413DRAFT_1232	173.0	0	N/A	N/A
structural_annotation	UHGV-0389775_48	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_49	phrog_88	172.3	0	major tail protein	tail
UniRef90	UHGV-0389775_49	UniRef90_A0A1C6HPC6	291.0	0	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0389775_49	610130.Closa_0749	288.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0389775_49	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0389775_49	PF06488,TIGR01603,COG3157	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_50	phrog_78	57.5	2.8e-16	tail terminator	connector
eggNOG-mapper	UHGV-0389775_50	1304866.K413DRAFT_1230	163.0	0	N/A	N/A
structural_annotation	UHGV-0389775_50	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0389775_51	UniRef90_UPI0006C82A14	167.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0389775_51	1304866.K413DRAFT_1229	153.0	0	N/A	N/A
Pfam	UHGV-0389775_51	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0389775_51	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_52	phrog_25	67.5	1.9e-19	head closure Hc1	connector
UniRef90	UHGV-0389775_52	UniRef90_A0A0F0CD00	203.0	0	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0389775_52	1304866.K413DRAFT_1228	196.0	0	head-tail adaptor	N/A
Pfam	UHGV-0389775_52	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0389775_52	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0389775_52	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0389775_52	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_53	phrog_40	44.3	0.0000000000025	head-tail adaptor Ad1	connector
UniRef90	UHGV-0389775_53	UniRef90_UPI001896F325	146.0	6.44597e-44	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0389775_53	1304866.K413DRAFT_1227	126.0	1.49e-36	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0389775_53	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0389775_53	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0389775_53	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_54	phrog_10	215.4	0	major head protein	head and packaging
UniRef90	UHGV-0389775_54	UniRef90_A0A0F0C801	655.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0389775_54	397288.C806_00073	525.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0389775_54	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0389775_54	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0389775_54	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0389775_54	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0389775_55	K06904	101.4	1.3e-29	N/A	N/A
PHROG	UHGV-0389775_55	phrog_80	113.2	3.9e-33	head maturation protease	head and packaging
UniRef90	UHGV-0389775_55	UniRef90_UPI0018985D9B	322.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0389775_55	397288.C806_00074	263.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0389775_55	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0389775_55	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0389775_55	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0389775_55	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_56	phrog_12	217.4	0	portal protein	head and packaging
UniRef90	UHGV-0389775_56	UniRef90_A0A3E3ILZ4	691.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0389775_56	397288.C806_00075	426.0	0	Portal protein	N/A
Pfam	UHGV-0389775_56	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0389775_56	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0389775_56	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0389775_56	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_57	phrog_9	266.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0389775_57	UniRef90_A0A0F0CBF9	1026.0	0	Phage terminase	N/A
eggNOG-mapper	UHGV-0389775_57	1304866.K413DRAFT_1222	944.0	0	Terminase	N/A
Pfam	UHGV-0389775_57	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0389775_57	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0389775_57	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0389775_57	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0389775_58	phrog_83	67.6	1.9e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0389775_58	UniRef90_A0A412ZBU7	281.0	0	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0389775_58	1304866.K413DRAFT_1221	246.0	0	phage terminase small subunit	N/A
Pfam	UHGV-0389775_58	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0389775_58	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0389775_58	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A