UHGV-0390018 (vOTU-015373)

Viral Genome: UHGV-0390018

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0390018
vOTU ID	vOTU-015373
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_2120
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	81.52 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9697
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.1
Jumbo phage	No

Genome content
Genome length (bp)	40,485
GC content	42.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	91%
Average CDS length (bps)	615.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.52)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0390018_1	phrog_10608	82.2	4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0390018_1	762984.HMPREF9445_02550	82.4	5.65e-20	N/A	N/A
PHROG	UHGV-0390018_4	phrog_11227	138.8	1.90002e-41	protease	other
UniRef90	UHGV-0390018_4	UniRef90_A0A841MSP4	110.0	9.24e-29	Regulator of protease activity HflC (Stomatin/prohibitin superfamily)	N/A
eggNOG-mapper	UHGV-0390018_4	111105.HR09_05995	124.0	6.46e-35	N/A	N/A
UniRef90	UHGV-0390018_5	UniRef90_A0A653HXZ6	126.0	3.38e-32	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0390018_5	696748.ASU2_02615	108.0	2.35e-26	Membrane	N/A
COG	UHGV-0390018_5	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
UniRef90	UHGV-0390018_6	UniRef90_UPI001EDC387B	114.0	2.35e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0390018_6	1121098.HMPREF1534_01994	111.0	1.71e-28	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
COG	UHGV-0390018_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
eggNOG-mapper	UHGV-0390018_7	1235813.JCM10003_615	49.7	0.00000121	N/A	N/A
structural_annotation	UHGV-0390018_7	PF08587	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_11	phrog_310	138.2	6.89999e-41	transposase	integration and excision
eggNOG-mapper	UHGV-0390018_11	457424.BFAG_01475	639.0	0	N/A	N/A
COG	UHGV-0390018_11	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0390018_11	PF02914,NF033594,COG1662	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_12	phrog_296	81.0	2e-23	DNA transposition protein	integration and excision
UniRef90	UHGV-0390018_12	UniRef90_A0A2P8EAU0	322.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0390018_12	457424.BFAG_01474	313.0	0	AAA domain	N/A
Pfam	UHGV-0390018_12	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0390018_12	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0390018_12	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
KOfam	UHGV-0390018_13	K04485	41.8	0.0000000000079	radA, sms; DNA repair protein RadA/Sms	N/A
PHROG	UHGV-0390018_13	phrog_6891	149.2	3.36312e-44	ATPase	other
UniRef90	UHGV-0390018_13	UniRef90_A0A1H9BR23	231.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0390018_13	457424.BFAG_01473	206.0	0	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction	N/A
COG	UHGV-0390018_13	COG0467	N/A	N/A	RecA-superfamily ATPase, KaiC/GvpD/RAD55 family	N/A
structural_annotation	UHGV-0390018_13	PF03796,MF_01498,TIGR00416,COG1066	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_14	phrog_14123	99.8	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-0390018_14	1347393.HG726021_gene462	117.0	4.25e-32	N/A	N/A
PHROG	UHGV-0390018_16	phrog_846	124.5	7.3e-37	N/A	unknown function
UniRef90	UHGV-0390018_16	UniRef90_UPI000E49D416	387.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390018_16	1235813.JCM10003_625	274.0	0	N/A	N/A
Pfam	UHGV-0390018_16	PF11363	N/A	N/A	N/A	DUF3164
structural_annotation	UHGV-0390018_16	PF11363	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390018_20	PF08029,MF_00659,NF010078,COG4075	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390018_23	1347393.HG726022_gene3591	114.0	2.19e-29	KilA-N domain	N/A
UniRef90	UHGV-0390018_25	UniRef90_UPI000E4FB78F	136.0	9.80993e-41	N/A	N/A
eggNOG-mapper	UHGV-0390018_25	1236514.BAKL01000008_gene915	93.2	2.6e-24	N/A	N/A
Pfam	UHGV-0390018_25	PF14053	N/A	N/A	N/A	DUF4248
structural_annotation	UHGV-0390018_25	PF14053	N/A	N/A	N/A	N/A
UniRef90	UHGV-0390018_26	UniRef90_UPI000E539A92	263.0	0	HU family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0390018_26	1121098.HMPREF1534_00295	136.0	3.09e-39	Bacterial DNA-binding protein	N/A
Pfam	UHGV-0390018_26	PF18291	N/A	N/A	HU domain fused to wHTH, Ig, or Glycine-rich motif	HU-HIG
NCBIFam	UHGV-0390018_26	TIGR01201.1	N/A	N/A	HU family DNA-binding protein	N/A
COG	UHGV-0390018_26	COG0776	N/A	N/A	Bacterial nucleoid DNA-binding protein IHF-alpha	N/A
structural_annotation	UHGV-0390018_26	PF18291,MF_00380,TIGR01201,COG0776	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_28	phrog_6911	65.7	5.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0390018_28	1168289.AJKI01000041_gene3266	143.0	1.42001e-40	N/A	N/A
structural_annotation	UHGV-0390018_28	PF08873,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_29	phrog_26	58.5	7.4e-17	tail completion or Neck1 protein	connector
UniRef90	UHGV-0390018_29	UniRef90_UPI001899D069	256.0	0	phage virion morphogenesis protein	N/A
eggNOG-mapper	UHGV-0390018_29	1122973.KB904316_gene833	77.8	0.0000000000000018	Phage virion morphogenesis	N/A
Pfam	UHGV-0390018_29	PF05069	N/A	N/A	Phage virion morphogenesis family	Phage_tail_S
COG	UHGV-0390018_29	COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390018_29	PF05069,TIGR01635,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_30	phrog_35074	271.6	0	N/A	unknown function
UniRef90	UHGV-0390018_30	UniRef90_UPI001E515D18	716.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390018_30	1168289.AJKI01000041_gene3268	354.0	0	N/A	N/A
Pfam	UHGV-0390018_30	PF06074	N/A	N/A	N/A	DUF935
Pfam	UHGV-0390018_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0390018_30	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_31	phrog_195	50.1	0.000000000000053	head-tail adaptor	connector
UniRef90	UHGV-0390018_31	UniRef90_UPI0013ED3DE5	109.0	3.94e-28	N/A	N/A
eggNOG-mapper	UHGV-0390018_31	1121896.JMLU01000008_gene1819	81.6	6.94e-18	N/A	N/A
Pfam	UHGV-0390018_31	PF07030	N/A	N/A	Bacteriophage Mu, Gp36	Phage_Mu_Gp36
structural_annotation	UHGV-0390018_31	PF07030,COG4387	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_32	phrog_38	152.5	2.8026e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0390018_32	UniRef90_A0A840CFY6	514.0	0	Phage terminase large subunit-like protein	N/A
eggNOG-mapper	UHGV-0390018_32	1168289.AJKI01000041_gene3270	511.0	0	N/A	N/A
COG	UHGV-0390018_32	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0390018_32	PF17289,PF03237,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
UniRef90	UHGV-0390018_33	UniRef90_UPI0018A065D7	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390018_33	457424.BFAG_01449	109.0	5.1e-28	N/A	N/A
Pfam	UHGV-0390018_33	PF08822	N/A	N/A	N/A	DUF1804
structural_annotation	UHGV-0390018_33	PF10668	N/A	N/A	N/A	N/A
KOfam	UHGV-0390018_34	K01358	116.8	2.2e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0390018_34	phrog_94	168.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0390018_34	UniRef90_D4WCZ0	374.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0390018_34	1168289.AJKI01000041_gene3272	220.0	0	serine-type endopeptidase activity	N/A
Pfam	UHGV-0390018_34	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0390018_34	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0390018_34	PF00574,MF_00444,NF011089,COG0740	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390018_35	1168289.AJKI01000041_gene3273	296.0	0	N/A	N/A
structural_annotation	UHGV-0390018_35	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_36	phrog_907	103.4	4.9e-32	tail sheath	tail
UniRef90	UHGV-0390018_36	UniRef90_UPI001EDA6F38	505.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390018_36	1168289.AJKI01000041_gene3275	314.0	0	N/A	N/A
Pfam	UHGV-0390018_36	PF10758	N/A	N/A	N/A	DUF2586
structural_annotation	UHGV-0390018_36	PF10758,COG3497	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_37	phrog_4579	69.8	3.2e-20	tail protein	tail
eggNOG-mapper	UHGV-0390018_37	1168289.AJKI01000041_gene3276	175.0	0	N/A	N/A
structural_annotation	UHGV-0390018_37	PF09393,TIGR02241,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390018_38	PF20941	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_39	phrog_28	194.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0390018_39	UniRef90_UPI001CC9F6B2	523.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0390018_39	1168289.AJKI01000041_gene3279	239.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0390018_39	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0390018_39	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0390018_39	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0390018_39	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_40	phrog_5233	68.6	8.2e-20	N/A	unknown function
UniRef90	UHGV-0390018_40	UniRef90_K5CJK3	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390018_40	867902.Ornrh_2241	146.0	2.48002e-41	N/A	N/A
Pfam	UHGV-0390018_40	PF19512	N/A	N/A	N/A	DUF6046
structural_annotation	UHGV-0390018_40	PF19512,TIGR01633,COG3499	N/A	N/A	N/A	N/A
KOfam	UHGV-0390018_41	K06905	53.9	0.0000000000000023	N/A	N/A
PHROG	UHGV-0390018_41	phrog_4930	167.9	0	N/A	unknown function
UniRef90	UHGV-0390018_41	UniRef90_T2KNX1	223.0	0	Phage protein D	N/A
eggNOG-mapper	UHGV-0390018_41	1347342.BN863_28550	223.0	0	Late control gene D protein	N/A
COG	UHGV-0390018_41	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390018_41	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390018_42	1121896.JMLU01000008_gene1834	69.3	0.00000000000196	N/A	N/A
structural_annotation	UHGV-0390018_42	PF01455,MF_00216,TIGR00008,COG0361	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390018_43	1347342.BN863_28520	79.7	2.52e-18	N/A	N/A
structural_annotation	UHGV-0390018_43	PF04965,COG3628	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_44	phrog_15037	79.6	3.2e-23	N/A	unknown function
UniRef90	UHGV-0390018_44	UniRef90_UPI0015E74944	216.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0390018_44	563008.HMPREF0665_02457	98.6	4.93e-24	N/A	N/A
structural_annotation	UHGV-0390018_44	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_45	phrog_873	121.7	5.2e-36	endolysin	head and packaging
UniRef90	UHGV-0390018_45	UniRef90_UPI000E497E60	280.0	0	structural protein P5	N/A
eggNOG-mapper	UHGV-0390018_45	411479.BACUNI_00730	196.0	0	N/A	N/A
UniRef90	UHGV-0390018_46	UniRef90_A0A3E4WHF8	124.0	3.85e-33	Glycosyl transferase	N/A
eggNOG-mapper	UHGV-0390018_46	411477.PARMER_02018	101.0	6.92e-25	N/A	N/A
structural_annotation	UHGV-0390018_46	PF10277,COG3371	N/A	N/A	N/A	N/A
UniRef90	UHGV-0390018_48	UniRef90_UPI000E4E84BE	173.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0390018_48	1121896.JMLU01000008_gene1838	50.8	0.000000599	N/A	N/A
structural_annotation	UHGV-0390018_48	PF01476,NF010723,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0390018_49	phrog_38413	162.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0390018_49	575615.HMPREF0670_00650	303.0	0	N/A	N/A
structural_annotation	UHGV-0390018_49	PF03434,COG3948	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390018_50	521097.Coch_0636	67.8	0.00000000000489	N/A	N/A
eggNOG-mapper	UHGV-0390018_52	1236518.BAKP01000020_gene1413	107.0	3.14e-21	lipolytic protein G-D-S-L family	N/A
COG	UHGV-0390018_52	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
eggNOG-mapper	UHGV-0390018_54	411901.BACCAC_01113	99.8	4.24e-26	Bacterial dnaA protein helix-turn-helix	N/A
structural_annotation	UHGV-0390018_54	PF08299,NF004688	N/A	N/A	N/A	N/A
UniRef90	UHGV-0390018_55	UniRef90_UPI000E481466	454.0	0	N/A	N/A
PHROG	UHGV-0390018_59	phrog_1	74.3	1.9e-21	integrase	integration and excision
UniRef90	UHGV-0390018_59	UniRef90_UPI0015E66D47	530.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0390018_59	449673.BACSTE_00335	109.0	3.96e-24	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0390018_59	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
COG	UHGV-0390018_59	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0390018_59	PF00589,PF13102,MF_01808,TIGR02225,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0390018_60	K02478	112.0	5.8e-33	K02478; two-component system, LytTR family, sensor kinase [EC:2.7.13.3]	N/A
UniRef90	UHGV-0390018_60	UniRef90_A0A642C2Z4	110.0	1.85e-28	Histidine kinase (Fragment)	N/A
eggNOG-mapper	UHGV-0390018_60	484018.BACPLE_02101	192.0	0	Histidine kinase	N/A
Pfam	UHGV-0390018_60	PF06580	N/A	N/A	Histidine kinase	His_kinase
COG	UHGV-0390018_60	COG2972	N/A	N/A	Sensor histidine kinase YesM	N/A