UHGV-0390367 (vOTU-156386)

Viral Genome: UHGV-0390367

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0390367
vOTU ID	vOTU-156386
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4318
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.66 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.978
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.81
Jumbo phage	No

Genome content
Genome length (bp)	27,313
GC content	37.84%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	91%
Average CDS length (bps)	574.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0390367_1	397288.C806_00077	73.6	0.00000000000000569	N/A	N/A
PHROG	UHGV-0390367_2	phrog_9	251.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0390367_2	UniRef90_F3AAQ9	1093.0	0	Phage terminase	N/A
eggNOG-mapper	UHGV-0390367_2	1414720.CBYM010000002_gene575	773.0	0	Terminase	N/A
Pfam	UHGV-0390367_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0390367_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0390367_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0390367_2	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_3	phrog_12	173.6	0	portal protein	head and packaging
UniRef90	UHGV-0390367_3	UniRef90_A0A8E3N3P1	512.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0390367_3	508419.F8J160_9CAUD	335.0	0	Phage portal protein	N/A
Pfam	UHGV-0390367_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0390367_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0390367_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0390367_4	K06904	59.9	5.1e-17	N/A	N/A
PHROG	UHGV-0390367_4	phrog_80	64.0	3.3e-18	head maturation protease	head and packaging
UniRef90	UHGV-0390367_4	UniRef90_UPI0009F962E8	242.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0390367_4	397288.C806_00074	97.1	2.96e-23	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0390367_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
COG	UHGV-0390367_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
PHROG	UHGV-0390367_5	phrog_10	213.1	0	major head protein	head and packaging
UniRef90	UHGV-0390367_5	UniRef90_A0A2V2DA32	532.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0390367_5	1414720.CBYM010000002_gene572	358.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0390367_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0390367_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0390367_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0390367_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0390367_6	UniRef90_UPI0009315F56	94.0	5.6e-22	head fiber protein	N/A
eggNOG-mapper	UHGV-0390367_6	398513.BBNG_00850	67.8	0.00000000000265	N/A	N/A
PHROG	UHGV-0390367_7	phrog_40	44.4	0.0000000000021	head-tail adaptor Ad1	connector
UniRef90	UHGV-0390367_7	UniRef90_UPI0006D0B01F	160.0	0	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0390367_7	1304866.K413DRAFT_1227	93.2	2.52e-23	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0390367_7	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0390367_7	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_8	phrog_25	56.3	5e-16	head closure Hc1	connector
UniRef90	UHGV-0390367_8	UniRef90_UPI0006D1257D	213.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0390367_8	1304866.K413DRAFT_1228	119.0	2.3e-33	head-tail adaptor	N/A
Pfam	UHGV-0390367_8	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0390367_8	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0390367_8	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0390367_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_9	phrog_5	41.5	0.000000000031	tail completion or Neck1 protein	connector
UniRef90	UHGV-0390367_9	UniRef90_UPI0015710B2F	204.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0390367_9	1304866.K413DRAFT_1229	87.8	1.53e-20	N/A	N/A
Pfam	UHGV-0390367_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0390367_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_10	phrog_78	47.3	0.00000000000038	tail terminator	connector
eggNOG-mapper	UHGV-0390367_10	1280671.AUJH01000012_gene3145	100.0	2.39e-26	N/A	N/A
structural_annotation	UHGV-0390367_10	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_11	phrog_88	139.7	1.6e-41	major tail protein	tail
UniRef90	UHGV-0390367_11	UniRef90_A0A2V2DCA5	277.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0390367_11	411471.SUBVAR_05857	152.0	1.12104e-44	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0390367_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0390367_11	PF06488,TIGR01603	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_12	phrog_709	109.9	1.5e-32	N/A	unknown function
eggNOG-mapper	UHGV-0390367_12	1384066.JAGT01000001_gene931	123.0	1.55e-34	N/A	N/A
structural_annotation	UHGV-0390367_12	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_13	phrog_3033	54.8	9e-16	N/A	unknown function
UniRef90	UHGV-0390367_13	UniRef90_A0A2X2UJ60	71.2	0.00000000000000594	Phage-like protein	N/A
eggNOG-mapper	UHGV-0390367_13	1235798.C817_04092	77.0	5.16e-18	N/A	N/A
PHROG	UHGV-0390367_14	phrog_1533	449.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0390367_14	UniRef90_A0A2V2DAW6	733.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0390367_14	903814.ELI_1307	399.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0390367_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0390367_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0390367_14	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0390367_14	PF10145,MF_04138,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_15	phrog_33	65.8	1.1e-18	distal tail protein Dit	tail
UniRef90	UHGV-0390367_15	UniRef90_A0A3R6C171	232.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0390367_15	1235798.C817_04593	228.0	0	phage tail	N/A
NCBIFam	UHGV-0390367_15	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0390367_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0390367_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_16	phrog_13289	421.2	0	tail protein	tail
UniRef90	UHGV-0390367_16	UniRef90_A0A412C574	697.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0390367_16	1235798.C817_02568	464.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0390367_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0390367_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0390367_16	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0390367_16	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
KOfam	UHGV-0390367_17	K21473	42.2	0.000000000011	ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]	N/A
PHROG	UHGV-0390367_17	phrog_14030	126.4	1.8e-37	N/A	unknown function
UniRef90	UHGV-0390367_17	UniRef90_A0A4R4FEU7	215.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0390367_17	1232452.BAIB02000007_gene1613	175.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0390367_17	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0390367_17	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0390367_17	PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390367_18	33035.JPJF01000043_gene1001	102.0	2.06e-21	N/A	N/A
PHROG	UHGV-0390367_19	phrog_36886	44.4	0.0000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0390367_19	665956.HMPREF1032_02937	144.0	9.95e-40	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0390367_19	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
eggNOG-mapper	UHGV-0390367_21	1232452.BAIB02000007_gene1607	102.0	3.9e-26	N/A	N/A
NCBIFam	UHGV-0390367_22	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0390367_22	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_23	phrog_937	49.5	0.000000000000072	hemolysin	other
eggNOG-mapper	UHGV-0390367_23	608534.GCWU000341_02271	50.1	0.00000136	N/A	N/A
PHROG	UHGV-0390367_24	phrog_10091	106.8	1.3e-31	holin	lysis
UniRef90	UHGV-0390367_24	UniRef90_A0A1C5RHU1	126.0	3.44e-36	Small integral membrane protein	N/A
eggNOG-mapper	UHGV-0390367_24	1225805.J7KGX7_9CAUD	117.0	1.75e-33	Bacteriophage holin	N/A
Pfam	UHGV-0390367_24	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0390367_24	TIGR01598.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0390367_24	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_25	phrog_3291	69.0	5.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0390367_25	658086.HMPREF0994_06176	60.8	0.00000000000655	N/A	N/A
PHROG	UHGV-0390367_26	phrog_1758	148.7	2.66247e-44	acetyltransferase	other
UniRef90	UHGV-0390367_26	UniRef90_UPI001961E773	238.0	0	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0390367_26	658655.HMPREF0988_02567	235.0	0	acetyltransferase	N/A
COG	UHGV-0390367_26	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
structural_annotation	UHGV-0390367_26	PF13673,MF_02210,NF000360,COG2153	N/A	N/A	N/A	N/A
KOfam	UHGV-0390367_27	K01448	97.3	1.8e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0390367_27	phrog_435	152.1	2.8026e-45	endolysin	lysis
UniRef90	UHGV-0390367_27	UniRef90_UPI001C8E9452	289.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0390367_27	537007.BLAHAN_05253	202.0	0	Ami_3	N/A
Pfam	UHGV-0390367_27	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0390367_27	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
Pfam	UHGV-0390367_27	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0390367_27	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0390367_27	PF01520,PF19127,MF_00417,TIGR02883,TIGR04035,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0390367_28	K14059	64.3	2.3e-18	int; integrase	N/A
PHROG	UHGV-0390367_28	phrog_1	99.8	3.1e-29	integrase	integration and excision
UniRef90	UHGV-0390367_28	UniRef90_UPI0008DAC4F1	773.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0390367_28	1235798.C817_04751	400.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0390367_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0390367_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0390367_28	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_29	phrog_6988	135.2	2.1e-40	N/A	unknown function
UniRef90	UHGV-0390367_29	UniRef90_UPI0008DAF6BB	288.0	0	TIR domain-containing protein	N/A
eggNOG-mapper	UHGV-0390367_29	203119.Cthe_2456	147.0	1.48538e-43	N/A	N/A
PADLOC	UHGV-0390367_29	ThsB1_00002	48.3	0.00000000000021	TIR-like	Thoeris
Pfam	UHGV-0390367_29	PF08937	N/A	N/A	Thoeris protein ThsB, TIR-like domain	ThsB_TIR
structural_annotation	UHGV-0390367_29	PF08937,MF_03036,TIGR03646,COG0758	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_30	phrog_419	78.0	3.9e-24	N/A	unknown function
UniRef90	UHGV-0390367_30	UniRef90_UPI001E40EA70	105.0	1e-28	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0390367_30	203119.Cthe_2457	106.0	1.25e-29	N/A	N/A
structural_annotation	UHGV-0390367_30	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_31	phrog_7395	150.0	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0390367_31	UniRef90_UPI0009F594E1	297.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390367_31	886882.PPSC2_c2958	135.0	2.96e-38	N/A	N/A
Pfam	UHGV-0390367_31	PF14015	N/A	N/A	N/A	DUF4231
NCBIFam	UHGV-0390367_31	NF033634.1	N/A	N/A	SLATT domain-containing protein	N/A
structural_annotation	UHGV-0390367_31	PF14015,NF033634	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_32	phrog_87	81.8	5.7e-24	metallo-protease	other
UniRef90	UHGV-0390367_32	UniRef90_UPI000C75818E	278.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0390367_32	411460.RUMTOR_02055	193.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0390367_32	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0390367_32	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0390367_32	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0390367_33	K22300	49.0	0.00000000000011	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0390367_33	phrog_8	50.8	0.000000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-0390367_33	UniRef90_A0A6N7WA45	182.0	0	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0390367_33	411460.RUMTOR_02056	167.0	0	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0390367_33	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0390367_33	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0390367_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_34	phrog_8	46.3	0.00000000000091	transcriptional regulator	transcription regulation
UniRef90	UHGV-0390367_34	UniRef90_C0CLL3	97.4	1.94e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0390367_34	476272.RUMHYD_01735	97.4	3.26e-26	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0390367_34	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0390367_34	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0390367_36	K07741	150.7	1.82169e-44	antB; anti-repressor protein	N/A
PHROG	UHGV-0390367_36	phrog_63	142.6	2.90069e-42	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0390367_36	UniRef90_A7B3Q4	413.0	0	AntA/AntB antirepressor	N/A
eggNOG-mapper	UHGV-0390367_36	411470.RUMGNA_02184	413.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0390367_36	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0390367_36	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0390367_36	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0390367_36	PF09669,PF03374,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_40	phrog_643	47.2	0.00000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0390367_40	UniRef90_UPI001921B44D	125.0	2.15e-36	aspartate ammonia-lyase	N/A
structural_annotation	UHGV-0390367_40	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_41	phrog_3675	40.1	0.000000000041	N/A	unknown function
UniRef90	UHGV-0390367_41	UniRef90_A0A7T3MNF8	92.8	1.41e-22	Lactate permease	N/A
eggNOG-mapper	UHGV-0390367_41	1118063.I7J6R8_9CAUD	80.9	1.2e-18	N/A	N/A
structural_annotation	UHGV-0390367_41	PF08679,MF_01177,NF038268,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0390367_42	phrog_18248	54.7	0.0000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0390367_42	UniRef90_R6NXT3	115.0	7.46e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0390367_42	665950.HMPREF1025_02561	80.1	1.96e-19	sequence-specific DNA binding	N/A
Pfam	UHGV-0390367_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0390367_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0390367_42	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390367_43	PF10743,NF040990,COG3311	N/A	N/A	N/A	N/A