UHGV-0390750 (vOTU-144921)

Viral Genome: UHGV-0390750

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0390750
vOTU ID	vOTU-144921
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_5245
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9828
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.64
Jumbo phage	No

Genome content
Genome length (bp)	22,093
GC content	43.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	23
CDS density	98%
Average CDS length (bps)	938.22
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0390750_1	K07474	88.4	1.6e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0390750_1	phrog_51	115.2	4.4e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0390750_1	UniRef90_UPI001BDE0009	330.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0390750_1	1054460.SPPN_00130	207.0	0	DNA packaging	N/A
Pfam	UHGV-0390750_1	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0390750_1	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0390750_1	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0390750_2	K06909	112.0	5.8e-33	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0390750_2	phrog_5653	190.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0390750_2	UniRef90_U6E9B3	801.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0390750_2	73422.L0P509_9CAUD	808.0	0	Terminase-like family	N/A
Pfam	UHGV-0390750_2	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0390750_2	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0390750_2	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
structural_annotation	UHGV-0390750_2	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_3	phrog_64	442.5	0	portal protein	head and packaging
UniRef90	UHGV-0390750_3	UniRef90_UPI001BDE5C21	955.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0390750_3	682370.C9W9H5_9CAUD	767.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0390750_3	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0390750_3	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0390750_3	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_4	phrog_115	276.9	0	minor head protein	head and packaging
UniRef90	UHGV-0390750_4	UniRef90_UPI001BDEDE0A	570.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0390750_4	1385385.U6E9F1_9CAUD	477.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0390750_4	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0390750_4	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
structural_annotation	UHGV-0390750_4	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_5	phrog_172	92.0	8.6e-27	head scaffolding protein	head and packaging
UniRef90	UHGV-0390750_5	UniRef90_UPI0012BBE7C9	313.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390750_5	1123315.AUIP01000003_gene242	130.0	2.54e-35	N/A	N/A
Pfam	UHGV-0390750_5	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0390750_5	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_6	phrog_909	88.0	8e-26	major head protein	head and packaging
UniRef90	UHGV-0390750_6	UniRef90_A0A2X3UEG8	187.0	0	Phage structural protein	N/A
eggNOG-mapper	UHGV-0390750_6	1123315.AUIP01000003_gene243	68.2	0.000000000000484	N/A	N/A
structural_annotation	UHGV-0390750_6	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_7	phrog_29	254.8	0	major head protein	head and packaging
UniRef90	UHGV-0390750_7	UniRef90_UPI0012BD5E4A	666.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0390750_7	85154.O34062_BPO12	528.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0390750_7	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0390750_7	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_8	phrog_5279	67.8	9.3e-20	N/A	unknown function
UniRef90	UHGV-0390750_8	UniRef90_O34063	56.2	0.00000000272	ORF32	N/A
PHROG	UHGV-0390750_9	phrog_132	75.2	7.1e-22	head-tail adaptor	connector
UniRef90	UHGV-0390750_9	UniRef90_UPI0012BD50BC	232.0	0	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0390750_9	1123302.KB904182_gene68	154.0	0	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0390750_9	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0390750_9	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_10	phrog_348	84.5	1e-24	minor head protein	head and packaging
UniRef90	UHGV-0390750_10	UniRef90_O34065	141.0	1.01006e-41	ORF34	N/A
structural_annotation	UHGV-0390750_10	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_11	phrog_5	59.2	1e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-0390750_11	UniRef90_UPI001581B264	216.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0390750_11	682370.C9W9I3_9CAUD	157.0	0	exonuclease activity	N/A
Pfam	UHGV-0390750_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0390750_11	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0390750_11	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_12	phrog_176	102.7	2.6e-30	tail terminator	connector
UniRef90	UHGV-0390750_12	UniRef90_UPI0019D57AB9	263.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390750_12	306323.Q56S92_9CAUD	213.0	0	N/A	N/A
structural_annotation	UHGV-0390750_12	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_13	phrog_238	168.9	0	major tail protein	tail
UniRef90	UHGV-0390750_13	UniRef90_UPI0012BD016F	323.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-0390750_13	1385385.U6E9D4_9CAUD	277.0	0	Phage major tail protein 2	N/A
Pfam	UHGV-0390750_13	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
NCBIFam	UHGV-0390750_13	TIGR02126.1	N/A	N/A	phage major tail protein, TP901-1 family	N/A
structural_annotation	UHGV-0390750_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_14	phrog_183	97.1	1.7e-28	tail chaperone protein	tail
UniRef90	UHGV-0390750_14	UniRef90_O34069	164.0	0	ORF38	N/A
eggNOG-mapper	UHGV-0390750_14	85154.O34069_BPO12	164.0	0	Pfam:Phage_TAC_12	N/A
Pfam	UHGV-0390750_14	PF12363	N/A	N/A	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
structural_annotation	UHGV-0390750_14	PF12363	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_15	phrog_441	70.5	2.5e-20	tail assembly chaperone	tail
UniRef90	UHGV-0390750_15	UniRef90_O34070	91.3	8.79e-22	ORF39	N/A
PHROG	UHGV-0390750_16	phrog_1204	648.8	0	tail protein	tail
UniRef90	UHGV-0390750_16	UniRef90_UPI00189FCAB6	1293.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0390750_16	85154.O34071_BPO12	915.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0390750_16	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-0390750_16	PF04513	N/A	N/A	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
NCBIFam	UHGV-0390750_16	TIGR02675.1	N/A	N/A	tape measure protein	N/A
PHROG	UHGV-0390750_17	phrog_202	414.9	0	distal tail protein Dit	tail
UniRef90	UHGV-0390750_17	UniRef90_UPI001C02C7FE	1039.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0390750_17	78541.O80180_9CAUD	618.0	0	Phage tail protein	N/A
Pfam	UHGV-0390750_17	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0390750_17	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0390750_17	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
KOfam	UHGV-0390750_18	K06823	43.9	0.00000000000072	COL18A; collagen type XVIII alpha	N/A
PHROG	UHGV-0390750_18	phrog_588	767.4	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0390750_18	UniRef90_UPI00158299B3	1721.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0390750_18	682370.C9W9J0_9CAUD	1265.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-0390750_18	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0390750_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
NCBIFam	UHGV-0390750_18	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0390750_18	PF14594,PF19081,TIGR01665,TIGR04488,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_19	phrog_372	604.7	0	tail protein	tail
UniRef90	UHGV-0390750_19	UniRef90_UPI001D0A9119	1214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390750_19	90410.Q9XJB2_9CAUD	905.0	0	N/A	N/A
Pfam	UHGV-0390750_19	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-0390750_19	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_20	phrog_2566	89.0	3e-26	N/A	unknown function
UniRef90	UHGV-0390750_20	UniRef90_A0A139N2Q3	85.5	5.73e-20	Orf49	N/A
eggNOG-mapper	UHGV-0390750_20	59241.E7DNC0_BPDP1	73.9	3.56e-16	N/A	N/A
PHROG	UHGV-0390750_21	phrog_199	47.0	0.00000000000026	holin	lysis
UniRef90	UHGV-0390750_21	UniRef90_A0A2A5QG13	259.0	0	Holin	N/A
eggNOG-mapper	UHGV-0390750_21	1051631.F8HGP0_9CAUD	236.0	0	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-0390750_21	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0390750_21	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0390750_21	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_22	phrog_6487	80.0	3.7e-23	N/A	unknown function
UniRef90	UHGV-0390750_22	UniRef90_A0A3S4LRZ3	130.0	2.57e-36	N/A	N/A
eggNOG-mapper	UHGV-0390750_22	999425.HMPREF9186_02053	59.7	0.00000000157	N/A	N/A
structural_annotation	UHGV-0390750_22	PF19077,NF032891,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0390750_23	phrog_4757	45.7	0.00000000000099	N/A	unknown function
UniRef90	UHGV-0390750_23	UniRef90_A0A150NVR4	91.3	1.05e-21	N/A	N/A