UHGV-0390945 (vOTU-161670)

Viral Genome: UHGV-0390945

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0390945
vOTU ID	vOTU-161670
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_2409
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.97 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.56
Jumbo phage	No

Genome content
Genome length (bp)	39,269
GC content	51.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	90%
Average CDS length (bps)	578.80
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.97)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0390945_1	phrog_10714	56.4	4.2e-16	N/A	unknown function
UniRef90	UHGV-0390945_1	UniRef90_UPI001C3A10B1	67.4	0.00000000000212	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-0390945_1	742738.HMPREF9460_04055	98.2	1.67e-25	N/A	N/A
Pfam	UHGV-0390945_1	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
PHROG	UHGV-0390945_2	phrog_599	42.0	0.000000000016	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0390945_2	UniRef90_UPI00195EAACB	198.0	0	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0390945_2	742738.HMPREF9460_04054	92.0	4.84e-23	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0390945_2	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0390945_2	PF14354,TIGR03655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390945_3	PF12759	N/A	N/A	N/A	N/A
KOfam	UHGV-0390945_4	K01160	46.7	0.00000000000075	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0390945_4	phrog_4632	52.9	0.0000000000000013	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390945_4	UniRef90_A0A1V5ZUM0	119.0	4.81e-32	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0390945_4	469604.HMPREF0946_00819	60.1	0.000000000645	N/A	N/A
structural_annotation	UHGV-0390945_4	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0390945_6	K02314	355.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0390945_6	phrog_19	268.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390945_6	UniRef90_UPI00195742C3	815.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0390945_6	742738.HMPREF9460_00852	336.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0390945_6	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0390945_6	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0390945_6	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0390945_6	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_7	phrog_15768	142.7	5.88545e-44	N/A	unknown function
UniRef90	UHGV-0390945_7	UniRef90_UPI00189C2664	337.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390945_7	203119.Cthe_2466	97.1	4.79e-21	N/A	N/A
Pfam	UHGV-0390945_7	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0390945_7	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_8	phrog_862	84.5	1.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0390945_8	279238.Saro_3022	122.0	5.37e-32	N/A	N/A
structural_annotation	UHGV-0390945_8	PF05037,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_9	phrog_374	222.0	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390945_9	UniRef90_A0A7W0C2S3	175.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0390945_9	511437.Lbuc_1541	152.0	1.35926e-43	N/A	N/A
Pfam	UHGV-0390945_9	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0390945_9	PF17375	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390945_10	PF09943	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390945_14	742738.HMPREF9460_00848	79.3	1.05e-17	N/A	N/A
structural_annotation	UHGV-0390945_14	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0390945_20	K18830	56.6	5.1e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0390945_20	phrog_8	49.3	0.000000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0390945_20	UniRef90_UPI00195DE29C	244.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0390945_20	411471.SUBVAR_05818	110.0	1.11e-29	sequence-specific DNA binding	N/A
Pfam	UHGV-0390945_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0390945_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0390945_20	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_22	phrog_33872	61.8	5.8e-24	N/A	unknown function
KOfam	UHGV-0390945_23	K14059	125.1	9.6e-37	int; integrase	N/A
PHROG	UHGV-0390945_23	phrog_1	160.5	0	integrase	integration and excision
UniRef90	UHGV-0390945_23	UniRef90_UPI001959BD31	689.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0390945_23	1378168.N510_03298	452.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0390945_23	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0390945_23	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0390945_23	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390945_24	1378168.N510_03079	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390945_25	1408437.JNJN01000043_gene802	184.0	0	N/A	N/A
PHROG	UHGV-0390945_26	phrog_16490	262.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0390945_26	1408437.JNJN01000043_gene803	296.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390945_27	445972.ANACOL_01878	60.5	0.00000000247	N/A	N/A
PHROG	UHGV-0390945_30	phrog_4105	83.5	1.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0390945_30	537013.CLOSTMETH_01753	79.7	4.84e-18	N/A	N/A
PHROG	UHGV-0390945_31	phrog_13256	76.8	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0390945_31	1226322.HMPREF1545_00132	77.4	4.76e-18	N/A	N/A
KOfam	UHGV-0390945_32	K01448	174.6	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0390945_32	phrog_18955	384.2	0	N/A	unknown function
UniRef90	UHGV-0390945_32	UniRef90_A0A1C7FQI4	782.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0390945_32	1121344.JHZO01000003_gene744	258.0	0	Ami_3	N/A
Pfam	UHGV-0390945_32	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0390945_32	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0390945_32	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0390945_32	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_33	phrog_2310	63.8	1.3e-18	N/A	unknown function
PHROG	UHGV-0390945_34	phrog_22773	205.5	0	N/A	unknown function
UniRef90	UHGV-0390945_34	UniRef90_UPI001958116B	179.0	0	toxin-antitoxin system toxin subunit	N/A
eggNOG-mapper	UHGV-0390945_34	742738.HMPREF9460_03965	176.0	0	N/A	N/A
PHROG	UHGV-0390945_36	phrog_27545	230.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0390945_36	742738.HMPREF9460_00363	253.0	0	N/A	N/A
PHROG	UHGV-0390945_37	phrog_37900	70.9	1.5e-21	N/A	unknown function
UniRef90	UHGV-0390945_37	UniRef90_UPI0018A945F9	460.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390945_37	1519439.JPJG01000060_gene1894	254.0	0	N/A	N/A
Pfam	UHGV-0390945_37	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0390945_37	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0390945_37	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_38	phrog_10993	212.9	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0390945_38	UniRef90_UPI0018AA16B6	484.0	0	N/A	N/A
eggNOG-mapper	UHGV-0390945_38	742738.HMPREF9460_02534	250.0	0	N/A	N/A
Pfam	UHGV-0390945_38	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0390945_38	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_40	phrog_13589	51.6	2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0390945_40	411471.SUBVAR_06929	348.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0390945_40	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
UniRef90	UHGV-0390945_41	UniRef90_UPI001C1090AB	105.0	2.52e-24	collagen-like protein	N/A
eggNOG-mapper	UHGV-0390945_41	1297617.JPJD01000099_gene2171	106.0	4.31e-24	Collagen triple helix repeat protein	N/A
COG	UHGV-0390945_41	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
structural_annotation	UHGV-0390945_41	PF10651,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_43	phrog_32744	609.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0390945_43	1120998.AUFC01000030_gene2247	258.0	0	N/A	N/A
structural_annotation	UHGV-0390945_43	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_44	phrog_1194	63.4	3.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0390945_44	1226322.HMPREF1545_00060	235.0	0	N/A	N/A
structural_annotation	UHGV-0390945_44	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_45	phrog_1535	104.9	1.1e-33	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0390945_45	693746.OBV_18190	433.0	0	domain protein	N/A
COG	UHGV-0390945_45	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390945_45	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_46	phrog_8545	47.6	0.00000000000022	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0390945_46	UniRef90_UPI001D05CE4F	75.9	0.000000000000391	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0390945_46	1203606.HMPREF1526_01637	69.3	0.0000000000144	tRNA_anti-like	N/A
Pfam	UHGV-0390945_46	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
PHROG	UHGV-0390945_47	phrog_706	90.0	2.2e-26	N/A	unknown function
UniRef90	UHGV-0390945_47	UniRef90_UPI001D069FB9	387.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0390945_47	693746.OBV_18170	192.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0390945_47	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0390945_47	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_48	phrog_11299	87.3	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0390945_48	693746.OBV_18160	196.0	0	N/A	N/A
structural_annotation	UHGV-0390945_48	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_49	phrog_3099	90.2	2.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0390945_49	1232443.BAIA02000078_gene23	317.0	0	N/A	N/A
structural_annotation	UHGV-0390945_49	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_50	phrog_3266	54.6	0.0000000000000015	tail completion	connector
UniRef90	UHGV-0390945_50	UniRef90_A0A2Z4QA01	109.0	4.66e-28	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0390945_50	1232443.BAIA02000078_gene24	248.0	0	N/A	N/A
structural_annotation	UHGV-0390945_50	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_51	phrog_556	69.3	4.5e-20	minor head protein	head and packaging
UniRef90	UHGV-0390945_51	UniRef90_UPI00195E1497	275.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0390945_51	1226322.HMPREF1545_00054	170.0	0	Minor capsid protein	N/A
Pfam	UHGV-0390945_51	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0390945_51	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_52	phrog_3366	105.0	5.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0390945_52	1226322.HMPREF1545_00053	206.0	0	N/A	N/A
structural_annotation	UHGV-0390945_52	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_53	phrog_541	112.9	1.5e-33	head-tail adaptor	connector
eggNOG-mapper	UHGV-0390945_53	1120998.AUFC01000030_gene2237	65.9	0.0000000000072	N/A	N/A
eggNOG-mapper	UHGV-0390945_54	1226322.HMPREF1545_00051	213.0	0	N/A	N/A
PHROG	UHGV-0390945_55	phrog_10	176.5	0	major head protein	head and packaging
UniRef90	UHGV-0390945_55	UniRef90_U2SBS0	627.0	0	Phage capsid family protein	N/A
eggNOG-mapper	UHGV-0390945_55	1226322.HMPREF1545_00050	627.0	0	Phage capsid family	N/A
Pfam	UHGV-0390945_55	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0390945_55	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0390945_55	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0390945_55	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_56	phrog_2303	60.2	3.8e-17	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0390945_56	1226322.HMPREF1545_00049	261.0	0	N/A	N/A
PHROG	UHGV-0390945_58	phrog_581	283.5	0	minor head protein	head and packaging
UniRef90	UHGV-0390945_58	UniRef90_UPI001D080D49	944.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0390945_58	1226322.HMPREF1545_00046	405.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0390945_58	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0390945_58	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390945_58	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0390945_59	phrog_533	404.7	0	portal protein	head and packaging
UniRef90	UHGV-0390945_59	UniRef90_UPI001D078D46	895.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0390945_59	1226322.HMPREF1545_00044	780.0	0	N/A	N/A
Pfam	UHGV-0390945_59	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0390945_59	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0390945_60	K06909	388.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0390945_60	phrog_5653	162.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0390945_60	UniRef90_A0A2U1BEH4	811.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0390945_60	33035.JPJF01000106_gene3136	466.0	0	Terminase small subunit	N/A
Pfam	UHGV-0390945_60	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0390945_60	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0390945_60	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0390945_60	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0390945_60	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0390945_61	K07474	73.1	8.2e-21	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0390945_61	phrog_51	67.4	1.5e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0390945_61	UniRef90_UPI001D05F697	204.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0390945_61	1316932.MHH_c17910	70.1	0.000000000000164	Terminase small subunit	N/A
Pfam	UHGV-0390945_61	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0390945_61	COG3728	N/A	N/A	Phage terminase, small subunit	N/A