UHGV-0391878 (vOTU-157450)

Viral Genome: UHGV-0391878

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0391878
vOTU ID	vOTU-157450
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4086
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.77 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9759
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.15
Jumbo phage	No

Genome content
Genome length (bp)	29,145
GC content	46.07%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	44
CDS density	93%
Average CDS length (bps)	613.02
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.77)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0391878_1	411462.DORLON_00825	48.1	0.00000037	Putative lactococcus lactis phage r1t holin	N/A
PHROG	UHGV-0391878_2	phrog_4105	94.3	7.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0391878_2	657322.FPR_27220	124.0	4.6e-35	N/A	N/A
NCBIFam	UHGV-0391878_3	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0391878_3	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0391878_4	97139.C824_00245	56.2	0.0000000427	N/A	N/A
PHROG	UHGV-0391878_6	phrog_21765	40.8	0.00000000002	N/A	unknown function
eggNOG-mapper	UHGV-0391878_6	1163671.JAGI01000002_gene2841	80.1	0.0000000000000382	N/A	N/A
PHROG	UHGV-0391878_7	phrog_521	137.3	9.99995e-41	tail protein	tail
UniRef90	UHGV-0391878_7	UniRef90_A0A1E3U7J0	394.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0391878_7	1345695.CLSA_c35390	215.0	0	N/A	N/A
Pfam	UHGV-0391878_7	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0391878_7	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391878_7	PF10076,TIGR02242,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_8	phrog_10316	55.9	2.4e-16	tail fiber protein	tail
eggNOG-mapper	UHGV-0391878_8	665956.HMPREF1032_03261	99.0	1.63e-20	N/A	N/A
PHROG	UHGV-0391878_9	phrog_38707	159.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0391878_9	478749.BRYFOR_07634	311.0	0	tail collar domain protein	N/A
COG	UHGV-0391878_9	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0391878_10	phrog_13589	210.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0391878_10	1345695.CLSA_c22960	145.0	9.29e-37	N/A	N/A
COG	UHGV-0391878_10	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0391878_11	phrog_6	193.6	0	baseplate protein	tail
UniRef90	UHGV-0391878_11	UniRef90_A0A1E3A375	637.0	0	Baseplate J-like protein	N/A
eggNOG-mapper	UHGV-0391878_11	1121335.Clst_0406	340.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0391878_11	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0391878_11	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391878_11	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_12	phrog_120	73.1	3.3e-21	baseplate protein	tail
UniRef90	UHGV-0391878_12	UniRef90_A0A3E2VLZ8	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0391878_12	610130.Closa_1408	141.0	1.32997e-41	N/A	N/A
Pfam	UHGV-0391878_12	PF10934	N/A	N/A	N/A	DUF2634
COG	UHGV-0391878_12	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
structural_annotation	UHGV-0391878_12	PF10934,TIGR03357,COG3628	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391878_13	UniRef90_A0A413L5A6	80.5	5.44e-18	DNA helicase	N/A
eggNOG-mapper	UHGV-0391878_13	610130.Closa_1407	80.9	6.97e-19	N/A	N/A
structural_annotation	UHGV-0391878_13	PF10844,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_14	phrog_400	248.2	0	tail protein	tail
UniRef90	UHGV-0391878_14	UniRef90_A3DIB3	381.0	0	N/A	N/A
eggNOG-mapper	UHGV-0391878_14	203119.Cthe_2490	381.0	0	PFAM Phage late control gene D protein (GPD)	N/A
COG	UHGV-0391878_14	COG4193	N/A	N/A	Beta- N-acetylglucosaminidase	N/A
structural_annotation	UHGV-0391878_14	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_15	phrog_380	187.2	0	endolysin	lysis
UniRef90	UHGV-0391878_15	UniRef90_A0A1E3A4B0	430.0	0	LysM domain/BON superfamily protein	N/A
eggNOG-mapper	UHGV-0391878_15	1121335.Clst_0402	215.0	0	Lysin motif	N/A
Pfam	UHGV-0391878_15	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0391878_15	COG1652	N/A	N/A	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	N/A
structural_annotation	UHGV-0391878_15	PF06995,PF05489,MF_02014,TIGR02126,NF012230,COG3499,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_16	phrog_1068	558.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0391878_16	UniRef90_A0A6N3A3A2	645.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0391878_16	610130.Closa_1404	583.0	0	tape measure	N/A
Pfam	UHGV-0391878_16	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0391878_16	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0391878_16	COG5281	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0391878_17	phrog_389	136.6	9.99995e-41	tail protein XkdN-like	tail
UniRef90	UHGV-0391878_17	UniRef90_D3AJ47	201.0	0	Phage XkdN-like protein	N/A
eggNOG-mapper	UHGV-0391878_17	1121335.Clst_0400	189.0	0	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0391878_17	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-0391878_17	PF08890,COG4518	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_18	phrog_365	131.6	3.7e-39	tail protein	tail
UniRef90	UHGV-0391878_18	UniRef90_A0A1E3A3A7	304.0	0	Phage-like element PBSX protein XkdM	N/A
eggNOG-mapper	UHGV-0391878_18	610130.Closa_1401	219.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0391878_18	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0391878_18	PF09393,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_19	phrog_279	229.5	0	tail sheath	tail
UniRef90	UHGV-0391878_19	UniRef90_A0A3E3HV86	635.0	0	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-0391878_19	1121335.Clst_0397	444.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0391878_19	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0391878_19	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0391878_19	PF17482,PF04984,PF17481,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_20	phrog_525	93.2	2.2e-27	N/A	unknown function
UniRef90	UHGV-0391878_20	UniRef90_A0A174IGV6	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0391878_20	1121335.Clst_0396	87.4	2.92e-20	N/A	N/A
Pfam	UHGV-0391878_20	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0391878_20	PF20765	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391878_21	UniRef90_A0A3E3IA37	270.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0391878_21	610130.Closa_1398	173.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0391878_21	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0391878_21	PF04883,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_22	phrog_615	54.8	0.0000000000000016	head-tail adaptor	connector
eggNOG-mapper	UHGV-0391878_22	203119.Cthe_2481	82.8	4.64e-19	N/A	N/A
structural_annotation	UHGV-0391878_22	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_23	phrog_132	53.4	0.0000000000000039	head-tail adaptor	connector
UniRef90	UHGV-0391878_23	UniRef90_A0A1E3A379	227.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0391878_23	610130.Closa_1396	134.0	4.31e-39	N/A	N/A
structural_annotation	UHGV-0391878_23	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_24	phrog_29	251.5	0	major head protein	head and packaging
UniRef90	UHGV-0391878_24	UniRef90_A0A1E3A347	654.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0391878_24	642492.Clole_2756	428.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0391878_24	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0391878_24	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_25	phrog_909	91.7	5.5e-27	major head protein	head and packaging
UniRef90	UHGV-0391878_25	UniRef90_A0A0E3K1C5	80.5	4.8e-17	N/A	N/A
eggNOG-mapper	UHGV-0391878_25	642492.Clole_2757	99.8	3.54e-25	N/A	N/A
PHROG	UHGV-0391878_26	phrog_194	117.6	1.1e-34	head scaffolding protein	head and packaging
UniRef90	UHGV-0391878_26	UniRef90_A0A1E3A386	225.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0391878_26	610130.Closa_1394	203.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0391878_26	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0391878_26	PF06810	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391878_27	UniRef90_A0A373KYU2	48.5	0.00000324	Glutamyl-tRNA amidotransferase	N/A
PHROG	UHGV-0391878_29	phrog_115	320.4	0	minor head protein	head and packaging
UniRef90	UHGV-0391878_29	UniRef90_A0A1E3A4Q5	912.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-0391878_29	610130.Closa_1392	415.0	0	Phage head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-0391878_29	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-0391878_29	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0391878_29	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391878_29	PF03496,PF04233,MF_04142,NF041404,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_30	phrog_64	386.1	0	portal protein	head and packaging
UniRef90	UHGV-0391878_30	UniRef90_A0A3E3IA11	897.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0391878_30	357809.Cphy_2970	525.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0391878_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0391878_30	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0391878_30	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0391878_31	K06909	316.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0391878_31	phrog_3717	119.8	2.70451e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0391878_31	UniRef90_A0A1E3A370	747.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0391878_31	610130.Closa_1390	672.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0391878_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0391878_31	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0391878_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0391878_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0391878_31	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_32	phrog_509	270.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-0391878_32	UniRef90_A0A3E3I9Z4	367.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0391878_32	1449050.JNLE01000003_gene3896	236.0	0	DNA packaging	N/A
Pfam	UHGV-0391878_32	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
NCBIFam	UHGV-0391878_32	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0391878_32	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0391878_32	NF040601,COG5484	N/A	N/A	N/A	N/A
KOfam	UHGV-0391878_33	K00986	319.2	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0391878_33	phrog_1423	312.7	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0391878_33	UniRef90_G5FKG5	842.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0391878_33	742740.HMPREF9474_04657	804.0	0	COG COG3344 Retron-type reverse transcriptase	N/A
PADLOC	UHGV-0391878_33	PtuC2_00004	627.1	0	Reverse transcriptase	Septu
Pfam	UHGV-0391878_33	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
Pfam	UHGV-0391878_33	PF08388	N/A	N/A	Group II intron, maturase-specific domain	GIIM
NCBIFam	UHGV-0391878_33	TIGR04416.1	N/A	N/A	group II intron reverse transcriptase/maturase	N/A
COG	UHGV-0391878_33	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0391878_33	PF00078,PF08388,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391878_34	UniRef90_A0A7X2TP16	92.0	4.29e-23	Arginase	N/A
eggNOG-mapper	UHGV-0391878_34	877421.AUJT01000064_gene1007	103.0	8.77e-28	N/A	N/A
PHROG	UHGV-0391878_35	phrog_36	70.6	1.7e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0391878_35	UniRef90_UPI001D089637	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-0391878_35	1304866.K413DRAFT_3028	177.0	0	N/A	N/A
structural_annotation	UHGV-0391878_35	PF04545,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_36	phrog_8294	43.5	0.0000000000038	N/A	unknown function
structural_annotation	UHGV-0391878_36	PF04606	N/A	N/A	N/A	N/A
PHROG	UHGV-0391878_37	phrog_6568	67.0	2.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0391878_37	1203606.HMPREF1526_00241	57.0	0.000000000392	N/A	N/A
KOfam	UHGV-0391878_38	K04763	172.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0391878_38	phrog_1	148.5	5.04467e-44	integrase	integration and excision
UniRef90	UHGV-0391878_38	UniRef90_A0A174WH41	566.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0391878_38	1304866.K413DRAFT_1209	225.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0391878_38	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0391878_38	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0391878_38	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0391878_38	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0391878_40	UniRef90_A0A3E3IA00	286.0	0	N/A	N/A
Pfam	UHGV-0391878_40	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0391878_41	phrog_9820	42.0	0.0000000000071	N/A	unknown function
UniRef90	UHGV-0391878_41	UniRef90_A0A5D4MDK0	71.6	0.00000000000116	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0391878_41	97139.C824_00748	142.0	4.02999e-41	N/A	N/A