UHGV-0392145 (vOTU-100950)

Viral Genome: UHGV-0392145

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0392145
vOTU ID	vOTU-100950
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4399
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.89 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9777
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.78
Jumbo phage	No

Genome content
Genome length (bp)	26,790
GC content	30.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	28
CDS density	94%
Average CDS length (bps)	898.93
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 61.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0392145_1	phrog_5110	118.7	2e-35	terminase small subunit	head and packaging
UniRef90	UHGV-0392145_1	UniRef90_UPI001D06BD2A	134.0	1.89e-38	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0392145_1	349161.Dred_2608	130.0	4.45e-38	N/A	N/A
Pfam	UHGV-0392145_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0392145_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_2	phrog_314	83.0	4.7e-24	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392145_2	UniRef90_A0A075KJD6	130.0	2.33e-33	Putative truncated GIY-YIG endonuclease	N/A
eggNOG-mapper	UHGV-0392145_2	1399942.U3PCR9_9CAUD	127.0	4.28e-33	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-0392145_2	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
Pfam	UHGV-0392145_2	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
NCBIFam	UHGV-0392145_2	TIGR01453.1	N/A	N/A	group I intron endonuclease	N/A
structural_annotation	UHGV-0392145_2	PF19835,PF07460,PF20987,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_3	phrog_9	329.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0392145_3	UniRef90_A0A1I3QIL6	843.0	0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-0392145_3	1211817.CCAT010000053_gene2129	536.0	0	Phage Terminase	N/A
Pfam	UHGV-0392145_3	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0392145_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0392145_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0392145_3	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_4	phrog_12	124.9	5e-37	portal protein	head and packaging
UniRef90	UHGV-0392145_4	UniRef90_UPI00148519DF	600.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0392145_4	349161.Dred_2606	288.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0392145_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0392145_4	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0392145_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0392145_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0392145_5	K01358	152.5	2.8026e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0392145_5	phrog_94	233.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0392145_5	UniRef90_UPI00110724D9	380.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0392145_5	1232452.BAIB02000007_gene1626	237.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0392145_5	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0392145_5	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0392145_5	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_6	phrog_10	91.1	1.2e-26	major head protein	head and packaging
UniRef90	UHGV-0392145_6	UniRef90_A0A1C5YEV1	488.0	0	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
eggNOG-mapper	UHGV-0392145_6	1415774.U728_1252	310.0	0	Phage capsid family	N/A
Pfam	UHGV-0392145_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0392145_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0392145_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0392145_6	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_7	phrog_749	58.9	8.2e-17	N/A	unknown function
UniRef90	UHGV-0392145_7	UniRef90_A0A1I3QJG6	127.0	3.26e-36	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0392145_7	1211817.CCAT010000008_gene943	53.5	0.0000000451	N/A	N/A
PHROG	UHGV-0392145_8	phrog_5635	64.8	1.4e-18	head-tail adaptor	connector
UniRef90	UHGV-0392145_8	UniRef90_UPI0011070497	167.0	0	phage head closure protein	N/A
eggNOG-mapper	UHGV-0392145_8	1220589.CD32_01710	58.9	0.00000000161	N/A	N/A
NCBIFam	UHGV-0392145_8	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0392145_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392145_9	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_10	phrog_5509	124.1	6.1e-37	neck protein	connector
eggNOG-mapper	UHGV-0392145_10	936140.AEOT01000014_gene1361	62.4	0.000000000147	N/A	N/A
structural_annotation	UHGV-0392145_10	TIGR01725,COG5005	N/A	N/A	N/A	N/A
UniRef90	UHGV-0392145_11	UniRef90_A0A316S919	187.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0392145_11	1121866.AUGK01000006_gene884	146.0	5.94991e-42	N/A	N/A
structural_annotation	UHGV-0392145_11	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_13	phrog_58	228.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0392145_13	665950.HMPREF1025_02660	146.0	3.9e-33	phage tail tape measure protein	N/A
NCBIFam	UHGV-0392145_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0392145_13	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0392145_14	phrog_33	70.6	3.5e-20	distal tail protein Dit	tail
UniRef90	UHGV-0392145_14	UniRef90_A0A1C5VG03	218.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0392145_14	573061.Clocel_3532	155.0	3.36312e-44	tail component	N/A
NCBIFam	UHGV-0392145_14	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0392145_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0392145_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0392145_15	K11062	91.7	7.9e-27	entD; probable enterotoxin D	N/A
PHROG	UHGV-0392145_15	phrog_7043	392.0	0	tail protein	tail
UniRef90	UHGV-0392145_15	UniRef90_UPI0018AA7BAA	1828.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0392145_15	1292035.H476_1004	459.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0392145_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0392145_15	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
Pfam	UHGV-0392145_15	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
NCBIFam	UHGV-0392145_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0392145_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0392145_15	PF14594,PF08239,PF19081,PF13229,TIGR01665,NF040678,COG4926,COG4991,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_16	phrog_16573	42.9	0.000000000002	N/A	unknown function
eggNOG-mapper	UHGV-0392145_16	1536774.H70357_10680	143.0	4.81e-33	polygalacturonase activity	N/A
Pfam	UHGV-0392145_16	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0392145_16	COG5434	N/A	N/A	Polygalacturonase	N/A
eggNOG-mapper	UHGV-0392145_17	69328.PVLB_26847	74.7	1.17e-16	N/A	N/A
KOfam	UHGV-0392145_18	K13275	203.7	0	isp; major intracellular serine protease [EC:3.4.21.-]	N/A
PHROG	UHGV-0392145_18	phrog_3677	120.4	1.2e-35	protease	other
UniRef90	UHGV-0392145_18	UniRef90_UPI00058E86EB	149.0	1.74001e-40	S8 family peptidase	N/A
eggNOG-mapper	UHGV-0392145_18	1461580.CCAS010000001_gene99	149.0	3.96007e-41	Belongs to the peptidase S8 family	N/A
Pfam	UHGV-0392145_18	PF00082	N/A	N/A	Subtilase family	Peptidase_S8
COG	UHGV-0392145_18	COG1404	N/A	N/A	Serine protease, subtilisin family	N/A
PHROG	UHGV-0392145_19	phrog_1193	74.3	1.1e-21	hemolysin	other
UniRef90	UHGV-0392145_19	UniRef90_UPI0018AB0AA6	97.8	3.54e-25	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0392145_19	1415775.U729_2619	62.0	0.0000000000085	Haemolysin XhlA	N/A
Pfam	UHGV-0392145_19	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
UniRef90	UHGV-0392145_20	UniRef90_A0A0B5QTV9	63.9	0.00000000000676	Holin	N/A
eggNOG-mapper	UHGV-0392145_20	1391647.AVSV01000003_gene1694	53.5	0.0000000115	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0392145_20	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
COG	UHGV-0392145_20	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0392145_21	K01447	92.5	6.2e-27	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0392145_21	phrog_9611	90.2	1.7e-26	endolysin	lysis
UniRef90	UHGV-0392145_21	UniRef90_UPI001106EB99	317.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0392145_21	445973.CLOBAR_02328	254.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0392145_21	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0392145_21	PF19087	N/A	N/A	N/A	DUF5776
COG	UHGV-0392145_21	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0392145_21	PF01510,PF19087,MF_04111,NF008758,NF041850,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0392145_22	K06400	288.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0392145_22	phrog_95	308.1	0	integrase	integration and excision
UniRef90	UHGV-0392145_22	UniRef90_UPI001D16F150	548.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0392145_22	1151292.QEW_2304	418.0	0	resolvase	N/A
Pfam	UHGV-0392145_22	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0392145_22	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0392145_22	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0392145_22	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0392145_22	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0392145_25	K22300	63.9	3.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0392145_25	phrog_8	72.8	6.1e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0392145_25	UniRef90_A0A1C5YZ84	146.0	1.59748e-43	HTH-type transcriptional regulator immR	N/A
eggNOG-mapper	UHGV-0392145_25	1151292.QEW_2480	81.3	2.81e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-0392145_25	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0392145_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0392145_25	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0392145_26	K07729	64.3	2.5e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0392145_26	phrog_2967	46.7	0.00000000000059	transcriptional regulator	transcription regulation
UniRef90	UHGV-0392145_26	UniRef90_A0A1C5YYW2	127.0	7.37e-37	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-0392145_26	500633.CLOHIR_00340	60.5	0.0000000000203	Transcriptional	N/A
Pfam	UHGV-0392145_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0392145_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0392145_26	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0392145_27	phrog_1726	89.0	4.6e-26	anti-repressor	transcription regulation
UniRef90	UHGV-0392145_27	UniRef90_UPI001CA5BE8B	241.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0392145_27	180332.JTGN01000008_gene4118	184.0	0	ORF6N domain	N/A
Pfam	UHGV-0392145_27	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0392145_27	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0392145_27	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A