UHGV-0392513 (vOTU-080087)

Viral Genome: UHGV-0392513

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0392513
vOTU ID	vOTU-080087
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_2016
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9733
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.71
Jumbo phage	No

Genome content
Genome length (bp)	40,917
GC content	40.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	94%
Average CDS length (bps)	787.29
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0392513_1	K18830	73.6	3.6e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0392513_1	phrog_8	56.5	2.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0392513_1	UniRef90_UPI0004A3E791	137.0	1.55e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0392513_1	1235793.C809_03587	134.0	4.9e-39	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0392513_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0392513_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0392513_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0392513_5	K14059	240.8	0	int; integrase	N/A
PHROG	UHGV-0392513_5	phrog_1	200.7	0	integrase	integration and excision
UniRef90	UHGV-0392513_5	UniRef90_A0A110A705	466.0	0	Tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0392513_5	428125.CLOLEP_02743	400.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0392513_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0392513_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0392513_5	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_6	phrog_22978	1434.6	0	N/A	unknown function
UniRef90	UHGV-0392513_6	UniRef90_A0A1Y4WLF7	1230.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0392513_6	1410650.JHWL01000003_gene2814	425.0	0	N/A	N/A
Pfam	UHGV-0392513_6	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-0392513_7	1203606.HMPREF1526_02741	109.0	1.91e-23	N/A	N/A
PHROG	UHGV-0392513_9	phrog_511	235.8	0	internal virion protein	head and packaging
UniRef90	UHGV-0392513_9	UniRef90_A0A8D9UH72	335.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-0392513_9	1519439.JPJG01000060_gene1903	367.0	0	N/A	N/A
structural_annotation	UHGV-0392513_9	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_10	phrog_12105	118.4	3.9e-35	N/A	unknown function
eggNOG-mapper	UHGV-0392513_10	1226322.HMPREF1545_03850	85.1	1.24e-19	N/A	N/A
KOfam	UHGV-0392513_11	K17733	123.1	2.3e-36	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0392513_11	phrog_6523	132.7	3.2e-39	endolysin	lysis
UniRef90	UHGV-0392513_11	UniRef90_A0A4R1AQ15	184.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0392513_11	1145276.T479_01745	155.0	7.00649e-45	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	N/A
Pfam	UHGV-0392513_11	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0392513_11	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0392513_11	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_12	phrog_9467	190.6	0	N/A	unknown function
UniRef90	UHGV-0392513_12	UniRef90_UPI001C3853B3	146.0	2.14959e-42	Gp49 family protein	N/A
eggNOG-mapper	UHGV-0392513_12	1226322.HMPREF1545_03533	178.0	0	N/A	N/A
Pfam	UHGV-0392513_12	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0392513_12	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392513_12	PF13876	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_13	phrog_1129	62.3	6.2e-18	holin	lysis
UniRef90	UHGV-0392513_13	UniRef90_UPI001C1096AE	137.0	1.04e-40	phage holin family protein	N/A
eggNOG-mapper	UHGV-0392513_13	702450.CUW_0551	100.0	1e-26	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0392513_13	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0392513_13	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_14	phrog_355	61.2	1.8e-17	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392513_14	UniRef90_UPI000E473058	133.0	1.18e-38	N/A	N/A
eggNOG-mapper	UHGV-0392513_14	397290.C810_05229	139.0	1.04999e-41	N/A	N/A
structural_annotation	UHGV-0392513_14	PF14359	N/A	N/A	N/A	N/A
UniRef90	UHGV-0392513_19	UniRef90_F6DLP9	50.4	0.00000294	Mtd_N domain-containing protein	N/A
COG	UHGV-0392513_19	COG5434	N/A	N/A	Polygalacturonase	N/A
PHROG	UHGV-0392513_20	phrog_15239	59.1	7.2e-17	N/A	unknown function
PHROG	UHGV-0392513_21	phrog_1357	266.3	0	major head protein	head and packaging
UniRef90	UHGV-0392513_21	UniRef90_A0A8D9UH64	437.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0392513_21	1449126.JQKL01000003_gene1695	410.0	0	N/A	N/A
Pfam	UHGV-0392513_21	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0392513_21	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0392513_21	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_22	phrog_13908	316.6	0	N/A	unknown function
UniRef90	UHGV-0392513_22	UniRef90_UPI0012DFC3C8	117.0	6.02e-26	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0392513_22	1321782.HMPREF1986_00346	101.0	6.18e-22	N/A	N/A
KOfam	UHGV-0392513_23	K07584	64.0	2.6e-18	N/A	N/A
PHROG	UHGV-0392513_23	phrog_4478	57.0	2.8e-16	peptidase	other
eggNOG-mapper	UHGV-0392513_23	926561.KB900617_gene1817	52.0	0.000000345	Cysteine protease Prp	N/A
Pfam	UHGV-0392513_23	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0392513_23	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_24	phrog_156	336.8	0	portal protein	head and packaging
UniRef90	UHGV-0392513_24	UniRef90_A0A8D9UH10	647.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0392513_24	748224.HMPREF9436_02547	527.0	0	N/A	N/A
structural_annotation	UHGV-0392513_24	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0392513_25	K06909	139.8	2.29995e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0392513_25	phrog_979	163.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0392513_25	UniRef90_R5AXD9	686.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0392513_25	1410650.JHWL01000003_gene2834	561.0	0	N/A	N/A
Pfam	UHGV-0392513_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0392513_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0392513_25	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_26	phrog_606	101.7	6.9e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0392513_26	UniRef90_UPI0004BAB6EB	165.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0392513_26	397290.C810_05185	168.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0392513_26	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-0392513_29	phrog_2245	80.7	1.8e-23	nucleoside triphosphate pyrophosphohydrolase	other
structural_annotation	UHGV-0392513_29	NF001994	N/A	N/A	N/A	N/A
KOfam	UHGV-0392513_32	K00390	114.6	5.3e-34	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0392513_32	phrog_424	133.1	1.9e-39	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0392513_32	UniRef90_UPI0015934DC8	371.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0392513_32	411490.ANACAC_02386	347.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0392513_32	BrxP_00001	46.9	8e-25	BrxP	BREX
Pfam	UHGV-0392513_32	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0392513_32	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0392513_32	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0392513_34	K02316	92.9	4.3e-27	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0392513_34	phrog_11992	117.8	9.8e-35	N/A	unknown function
UniRef90	UHGV-0392513_34	UniRef90_A0A847VZB6	122.0	6.02e-32	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0392513_34	1280688.AUJB01000004_gene128	81.3	1.35e-16	CHC2 zinc finger	N/A
PADLOC	UHGV-0392513_34	drt-cluster192	61.3	2.5e-17	DRT	DRT
Pfam	UHGV-0392513_34	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0392513_34	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0392513_34	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_35	phrog_8841	530.1	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392513_35	UniRef90_A0A847VZF6	774.0	0	N/A	N/A
eggNOG-mapper	UHGV-0392513_35	742738.HMPREF9460_02495	476.0	0	N/A	N/A
Pfam	UHGV-0392513_35	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0392513_35	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0392513_35	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392513_35	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_36	phrog_3490	114.7	7.5e-34	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392513_36	UniRef90_UPI00041FA5FC	135.0	6.22e-38	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0392513_36	1120998.AUFC01000030_gene2218	135.0	1.04e-38	N/A	N/A
Pfam	UHGV-0392513_36	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0392513_36	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0392513_37	K03111	109.2	6.2e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0392513_37	phrog_44	122.5	3.7e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392513_37	UniRef90_A0A3B9SH48	120.0	2.05e-32	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0392513_37	626523.GCWU000342_01035	106.0	1.49e-27	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0392513_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0392513_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0392513_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0392513_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0392513_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_38	phrog_1227	252.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392513_38	UniRef90_UPI00041F978E	299.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0392513_38	1120998.AUFC01000030_gene2216	299.0	0	N/A	N/A
Pfam	UHGV-0392513_38	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0392513_38	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0392513_38	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_39	phrog_1499	278.5	0	N/A	unknown function
UniRef90	UHGV-0392513_39	UniRef90_A0A315Y1S7	588.0	0	Exonuclease SbcC	N/A
eggNOG-mapper	UHGV-0392513_39	1120998.AUFC01000030_gene2215	646.0	0	DNA recombination	N/A
Pfam	UHGV-0392513_39	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0392513_39	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-0392513_39	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0392513_40	phrog_21613	98.8	4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0392513_40	1007096.BAGW01000023_gene153	202.0	0	N/A	N/A
PHROG	UHGV-0392513_42	phrog_7964	178.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0392513_42	411470.RUMGNA_02189	105.0	1.97e-25	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0392513_42	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0392513_42	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
UniRef90	UHGV-0392513_46	UniRef90_UPI001C63F640	57.4	0.00000000219	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0392513_46	471855.Shel_14120	47.4	0.00000372	Helix-turn-helix domain	N/A
Pfam	UHGV-0392513_46	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0392513_46	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0392513_49	1235790.C805_00014	45.8	0.00000431	N/A	N/A