UHGV-0392851 (vOTU-149868)

Viral Genome: UHGV-0392851

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0392851
vOTU ID	vOTU-149868
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_5548
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.68 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.43
Jumbo phage	No

Genome content
Genome length (bp)	20,819
GC content	40.83%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	22
CDS density	95%
Average CDS length (bps)	900.41
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 64.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0392851_1	phrog_361	144.8	2.8026e-43	terminase small subunit	head and packaging
UniRef90	UHGV-0392851_1	UniRef90_A0A414CIM9	238.0	0	POU-specific domain-containing protein	N/A
eggNOG-mapper	UHGV-0392851_1	1316408.HSISM1_1050	238.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0392851_1	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0392851_1	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0392851_1	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_2	phrog_9	338.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0392851_2	UniRef90_A0A7G1IQ86	1090.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0392851_2	888049.HMPREF8578_0694	1097.0	0	Terminase	N/A
Pfam	UHGV-0392851_2	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0392851_2	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0392851_2	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0392851_2	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_3	phrog_12	191.1	0	portal protein	head and packaging
UniRef90	UHGV-0392851_3	UniRef90_A0A4D6B580	793.0	0	Portal (Connector) protein	N/A
eggNOG-mapper	UHGV-0392851_3	1316408.HSISM1_1052	796.0	0	Phage portal protein	N/A
Pfam	UHGV-0392851_3	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0392851_3	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0392851_3	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0392851_3	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0392851_4	K06904	130.9	1.3e-38	N/A	N/A
PHROG	UHGV-0392851_4	phrog_80	161.0	0	head maturation protease	head and packaging
UniRef90	UHGV-0392851_4	UniRef90_A0A414CJ71	377.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0392851_4	1316408.HSISM1_1053	374.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0392851_4	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0392851_4	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0392851_4	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0392851_4	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_5	phrog_10	174.1	0	major head protein	head and packaging
UniRef90	UHGV-0392851_5	UniRef90_A0A4D6B1V9	639.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0392851_5	1316408.HSISM1_1054	625.0	0	capsid protein	N/A
Pfam	UHGV-0392851_5	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0392851_5	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0392851_5	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0392851_5	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_6	phrog_3673	55.8	2.7e-16	Arc-like repressor	transcription regulation
UniRef90	UHGV-0392851_6	UniRef90_A0A4D6A7J7	73.6	0.00000000000000864	Transcriptional terminator	N/A
PHROG	UHGV-0392851_7	phrog_2550	127.5	2.3e-38	N/A	unknown function
UniRef90	UHGV-0392851_7	UniRef90_T0U4H0	167.0	0	Orf46	N/A
eggNOG-mapper	UHGV-0392851_7	644007.C5J965_9CAUD	149.0	1.4013e-45	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-0392851_7	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_8	phrog_1951	119.6	1e-35	head-tail adaptor	connector
UniRef90	UHGV-0392851_8	UniRef90_A0A414CIH3	200.0	0	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0392851_8	1316408.HSISM1_1057	200.0	0	Phage head-tail joining protein	N/A
NCBIFam	UHGV-0392851_8	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0392851_8	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0392851_8	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_9	phrog_5	46.4	0.0000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0392851_9	UniRef90_A0A414CIF4	159.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0392851_9	1316408.HSISM1_1058	169.0	0	N/A	N/A
Pfam	UHGV-0392851_9	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0392851_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_10	phrog_78	44.5	0.000000000003	tail terminator	connector
UniRef90	UHGV-0392851_10	UniRef90_T0U477	206.0	0	Prophage pi2 protein 38	N/A
eggNOG-mapper	UHGV-0392851_10	1316408.HSISM1_1241	206.0	0	N/A	N/A
structural_annotation	UHGV-0392851_10	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_11	phrog_88	149.6	1.54143e-44	major tail protein	tail
UniRef90	UHGV-0392851_11	UniRef90_T0U4F0	380.0	0	Phage major tail protein	N/A
eggNOG-mapper	UHGV-0392851_11	1316408.HSISM1_1242	380.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0392851_11	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0392851_11	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_12	phrog_709	134.6	3.7e-40	N/A	unknown function
UniRef90	UHGV-0392851_12	UniRef90_A0A0E4CSV4	166.0	0	Prophage pi2 protein 40	N/A
eggNOG-mapper	UHGV-0392851_12	1316408.HSISM1_1243	236.0	0	N/A	N/A
structural_annotation	UHGV-0392851_12	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0392851_13	K10421	55.4	5.6e-16	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	N/A
PHROG	UHGV-0392851_13	phrog_5755	407.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0392851_13	UniRef90_A0A1F0KCN3	1347.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0392851_13	1316408.HSISM1_1244	1189.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0392851_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0392851_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0392851_13	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0392851_13	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_14	phrog_33	43.1	0.0000000000093	distal tail protein Dit	tail
UniRef90	UHGV-0392851_14	UniRef90_UPI001CC00BD7	384.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0392851_14	1316408.HSISM1_1245	470.0	0	N/A	N/A
structural_annotation	UHGV-0392851_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_15	phrog_2189	470.1	0	tail protein	tail
UniRef90	UHGV-0392851_15	UniRef90_T0U481	1953.0	0	Phage endopeptidase	N/A
eggNOG-mapper	UHGV-0392851_15	1316408.HSISM1_1246	1953.0	0	Phage minor structural protein	N/A
NCBIFam	UHGV-0392851_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0392851_15	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392851_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_17	phrog_1554	201.4	0	N/A	unknown function
UniRef90	UHGV-0392851_17	UniRef90_A0A4V0EM35	349.0	0	N/A	N/A
eggNOG-mapper	UHGV-0392851_17	1005705.HMPREF9967_1055	162.0	0	N/A	N/A
structural_annotation	UHGV-0392851_17	PF07104	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_18	phrog_199	51.5	0.000000000000011	holin	lysis
UniRef90	UHGV-0392851_18	UniRef90_A0A7X2X3Q0	276.0	0	Holin	N/A
eggNOG-mapper	UHGV-0392851_18	1051631.F8HGP0_9CAUD	189.0	0	Pfam:Phage_holin_4_1	N/A
Pfam	UHGV-0392851_18	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0392851_18	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0392851_18	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_19	phrog_608	119.5	1.5e-35	holin	lysis
UniRef90	UHGV-0392851_19	UniRef90_T0TXN2	201.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0392851_19	1321372.AQQB01000060_gene79	115.0	3.76e-32	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0392851_19	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
NCBIFam	UHGV-0392851_19	TIGR01673.1	N/A	N/A	phage holin	N/A
PHROG	UHGV-0392851_20	phrog_1309	273.4	0	endolysin	lysis
UniRef90	UHGV-0392851_20	UniRef90_A0A1F0KA16	490.0	0	Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0392851_20	1316408.HSISM1_1251	444.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0392851_20	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0392851_20	PF08460	N/A	N/A	Bacterial SH3 domain	SH3_5
COG	UHGV-0392851_20	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0392851_20	PF08460,PF05257,NF041850,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0392851_21	phrog_6487	123.1	9.8e-37	N/A	unknown function
UniRef90	UHGV-0392851_21	UniRef90_A0A359YI00	223.0	0	N/A	N/A
eggNOG-mapper	UHGV-0392851_21	999425.HMPREF9186_02053	131.0	1.22e-35	N/A	N/A
structural_annotation	UHGV-0392851_21	PF05587,NF040788,COG5456	N/A	N/A	N/A	N/A
KOfam	UHGV-0392851_22	K14059	261.6	0	int; integrase	N/A
PHROG	UHGV-0392851_22	phrog_1	243.9	0	integrase	integration and excision
UniRef90	UHGV-0392851_22	UniRef90_A0A4D6B4Y3	686.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0392851_22	999425.HMPREF9186_01996	684.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0392851_22	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0392851_22	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0392851_22	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0392851_22	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0392851_22	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A