UHGV-0393008 (vOTU-004492)

Viral Genome: UHGV-0393008

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0393008
vOTU ID	vOTU-004492
Representative Genome?	Yes
Source	Benler
Original genome ID	OKUQ01000183.1
Associated BioSample	SAMEA3882546
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9808
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.5
Jumbo phage	No

Genome content
Genome length (bp)	43,433
GC content	41.26%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	67
CDS density	88%
Average CDS length (bps)	573.22
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0393008_1	PF17888	N/A	N/A	N/A	N/A
KOfam	UHGV-0393008_3	K00558	237.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0393008_3	phrog_116	263.3	0	DNA methyltransferase	other
UniRef90	UHGV-0393008_3	UniRef90_C0BC27	555.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0393008_3	1499683.CCFF01000017_gene2594	333.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0393008_3	MTase_II_00058	218.5	0	Type II methyltransferase	RM
Pfam	UHGV-0393008_3	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0393008_3	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0393008_3	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0393008_3	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_4	phrog_17690	130.4	6.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0393008_4	476272.RUMHYD_03925	171.0	0	N/A	N/A
UniRef90	UHGV-0393008_6	UniRef90_A0A6L8SWV5	174.0	0	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0393008_6	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0393008_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0393008_6	PF01726,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0393008_7	NF010187	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_8	phrog_8841	549.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0393008_8	UniRef90_A0A412EL97	1228.0	0	N/A	N/A
eggNOG-mapper	UHGV-0393008_8	476272.RUMHYD_01742	771.0	0	N/A	N/A
Pfam	UHGV-0393008_8	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0393008_8	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0393008_8	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0393008_8	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0393008_9	K02316	64.8	1.4e-18	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0393008_9	phrog_11992	156.9	0	N/A	unknown function
UniRef90	UHGV-0393008_9	UniRef90_A0A412EM56	305.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0393008_9	476272.RUMHYD_01741	183.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0393008_9	drt-UG29	55.4	6.4e-16	DRT	DRT
Pfam	UHGV-0393008_9	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0393008_9	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0393008_9	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_10	phrog_3490	145.8	2.20004e-43	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0393008_10	UniRef90_A0A395XB48	325.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0393008_10	357809.Cphy_2986	221.0	0	N/A	N/A
Pfam	UHGV-0393008_10	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0393008_10	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0393008_11	K03111	136.9	2.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0393008_11	phrog_44	139.3	2.50006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0393008_11	UniRef90_A0A412ELG8	248.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0393008_11	658655.HMPREF0988_02584	194.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0393008_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0393008_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0393008_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0393008_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0393008_11	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_12	phrog_7838	139.9	1.99993e-41	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0393008_12	UniRef90_A0A8D9UGW3	182.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0393008_12	742767.HMPREF9456_02052	183.0	0	N/A	N/A
structural_annotation	UHGV-0393008_12	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0393008_13	UniRef90_R6RDX0	79.3	3.7e-18	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0393008_14	NF001645	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_19	phrog_6058	55.4	7e-16	N/A	unknown function
UniRef90	UHGV-0393008_19	UniRef90_A0A2V1JQ38	63.5	0.0000000000449	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0393008_19	742733.HMPREF9469_05094	61.6	0.0000000000428	N/A	N/A
structural_annotation	UHGV-0393008_22	PF13601,MF_01819,NF008565,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0393008_23	K18830	65.0	7.5e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0393008_23	phrog_8	53.6	0.0000000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0393008_23	UniRef90_A0A6L8T004	238.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0393008_23	748224.HMPREF9436_01444	118.0	2.06e-32	N/A	N/A
PADLOC	UHGV-0393008_23	retron_type_VI_hth_cluster2_1	40.1	0.000000000095	N/A	Retron
Pfam	UHGV-0393008_23	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0393008_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0393008_23	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0393008_25	UniRef90_A0A3A6GQZ1	185.0	0	Zinc ribbon domain-containing protein	N/A
COG	UHGV-0393008_25	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0393008_26	K14059	99.4	5.6e-29	int; integrase	N/A
PHROG	UHGV-0393008_26	phrog_1	125.7	4.6e-37	integrase	integration and excision
UniRef90	UHGV-0393008_26	UniRef90_A0A6L8SXX0	799.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0393008_26	1235792.C808_05256	354.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0393008_26	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0393008_26	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_27	phrog_21825	73.7	1.6e-21	endolysin	lysis
UniRef90	UHGV-0393008_27	UniRef90_A0A6L8SXR6	514.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0393008_27	1121115.AXVN01000006_gene2170	431.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0393008_27	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0393008_27	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0393008_27	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0393008_27	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
UniRef90	UHGV-0393008_28	UniRef90_UPI001C0EBDDC	81.3	1.45e-16	pyocin knob domain-containing protein	N/A
PHROG	UHGV-0393008_29	phrog_18444	79.9	2.1e-23	N/A	unknown function
UniRef90	UHGV-0393008_29	UniRef90_UPI00156E9A45	75.9	8.28e-17	peptide chain release factor 2	N/A
PHROG	UHGV-0393008_30	phrog_6616	670.0	0	tail protein	tail
UniRef90	UHGV-0393008_30	UniRef90_UPI00156E2BA6	702.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0393008_30	33035.JPJF01000043_gene1002	250.0	0	N/A	N/A
structural_annotation	UHGV-0393008_30	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_31	phrog_1194	85.3	5.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0393008_31	1122918.KB907248_gene4488	51.2	0.0000017	N/A	N/A
structural_annotation	UHGV-0393008_31	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_32	phrog_1535	483.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0393008_32	UniRef90_A0A173R880	834.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0393008_32	476272.RUMHYD_01785	829.0	0	phage tail tape measure protein	N/A
COG	UHGV-0393008_32	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0393008_32	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_33	phrog_706	128.7	4.3e-38	N/A	unknown function
UniRef90	UHGV-0393008_33	UniRef90_UPI001BAD00AD	207.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0393008_33	411459.RUMOBE_01383	350.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0393008_33	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0393008_33	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_34	phrog_11299	66.5	4.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0393008_34	411459.RUMOBE_01382	59.3	0.00000000298	N/A	N/A
structural_annotation	UHGV-0393008_34	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_35	phrog_3099	132.6	2.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0393008_35	411902.CLOBOL_00129	171.0	0	N/A	N/A
structural_annotation	UHGV-0393008_35	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_36	phrog_3266	92.4	3.8e-27	tail completion	connector
eggNOG-mapper	UHGV-0393008_36	476272.RUMHYD_01781	150.0	4.90454e-44	N/A	N/A
structural_annotation	UHGV-0393008_36	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_37	phrog_556	66.2	3.9e-19	minor head protein	head and packaging
UniRef90	UHGV-0393008_37	UniRef90_UPI000E4989EB	294.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0393008_37	476272.RUMHYD_01780	160.0	0	N/A	N/A
Pfam	UHGV-0393008_37	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0393008_37	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_38	phrog_3366	93.5	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0393008_38	476272.RUMHYD_01779	152.0	2.8026e-45	N/A	N/A
structural_annotation	UHGV-0393008_38	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_39	phrog_1129	76.6	2.2e-22	holin	lysis
UniRef90	UHGV-0393008_39	UniRef90_A0A395X7B2	169.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0393008_39	411461.DORFOR_00721	114.0	3.57e-32	N/A	N/A
Pfam	UHGV-0393008_39	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0393008_39	PF06946	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0393008_40	1444310.JANV01000162_gene1177	47.8	0.00000787	N/A	N/A
PHROG	UHGV-0393008_41	phrog_541	102.9	1.4e-30	head-tail adaptor	connector
eggNOG-mapper	UHGV-0393008_41	476272.RUMHYD_01778	114.0	3.45e-30	N/A	N/A
PHROG	UHGV-0393008_42	phrog_544	167.9	0	major head protein	head and packaging
UniRef90	UHGV-0393008_42	UniRef90_A0A395X7A1	711.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0393008_42	1232453.BAIF02000011_gene3359	388.0	0	N/A	N/A
Pfam	UHGV-0393008_42	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0393008_42	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_43	phrog_194	67.4	2.8e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0393008_43	UniRef90_UPI001D14C9C8	187.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0393008_43	476272.RUMHYD_01775	200.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0393008_43	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0393008_44	phrog_28802	226.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0393008_44	476272.RUMHYD_01772	193.0	0	N/A	N/A
PHROG	UHGV-0393008_45	phrog_20016	207.5	0	N/A	unknown function
UniRef90	UHGV-0393008_45	UniRef90_A0A285PT46	170.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0393008_45	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-0393008_45	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_46	phrog_16490	197.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0393008_46	397290.C810_01328	194.0	0	N/A	N/A
PHROG	UHGV-0393008_47	phrog_22984	90.8	9.2e-27	N/A	unknown function
PHROG	UHGV-0393008_48	phrog_21718	134.1	6.89999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0393008_48	397290.C810_05210	125.0	8.49e-35	N/A	N/A
PHROG	UHGV-0393008_49	phrog_31631	67.1	1.7e-19	N/A	unknown function
UniRef90	UHGV-0393008_51	UniRef90_A0A395X7A4	179.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0393008_51	476272.RUMHYD_01766	121.0	1.52e-34	N/A	N/A
PHROG	UHGV-0393008_52	phrog_3754	113.9	1.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-0393008_52	476272.RUMHYD_01764	185.0	0	N/A	N/A
PHROG	UHGV-0393008_53	phrog_581	255.4	0	minor head protein	head and packaging
UniRef90	UHGV-0393008_53	UniRef90_A0A395X791	711.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0393008_53	476272.RUMHYD_01761	389.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0393008_53	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0393008_53	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0393008_53	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_55	phrog_2310	46.2	0.00000000000047	N/A	unknown function
eggNOG-mapper	UHGV-0393008_55	1151292.QEW_3251	46.2	0.00000357	N/A	N/A
PHROG	UHGV-0393008_57	phrog_533	275.5	0	portal protein	head and packaging
UniRef90	UHGV-0393008_57	UniRef90_A0A1C6CDM8	711.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0393008_57	33035.JPJF01000106_gene3135	536.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0393008_57	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0393008_59	K06909	374.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0393008_59	phrog_3717	155.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0393008_59	UniRef90_A0A6L8SYJ6	595.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0393008_59	33035.JPJF01000106_gene3136	506.0	0	Terminase small subunit	N/A
Pfam	UHGV-0393008_59	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0393008_59	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0393008_59	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0393008_59	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0393008_59	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_60	phrog_314	67.4	3.3e-19	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0393008_60	UniRef90_A0A075KJD6	107.0	3.35e-25	Putative truncated GIY-YIG endonuclease	N/A
eggNOG-mapper	UHGV-0393008_60	1399942.U3PCR9_9CAUD	99.4	7.02e-23	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-0393008_60	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
structural_annotation	UHGV-0393008_60	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_61	phrog_309	138.2	2.20004e-41	terminase small subunit	head and packaging
UniRef90	UHGV-0393008_61	UniRef90_A0A8J6P944	152.0	2.8026e-45	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0393008_61	1121091.AUMP01000003_gene2580	122.0	8.08e-34	transposase activity	N/A
Pfam	UHGV-0393008_61	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0393008_61	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0393008_61	PF07141	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0393008_64	397290.C810_05184	64.7	0.00000000000956	N/A	N/A
structural_annotation	UHGV-0393008_64	PF09038	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_66	phrog_8684	100.7	6.5e-30	N/A	unknown function
UniRef90	UHGV-0393008_66	UniRef90_A0A3A6GQT2	267.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0393008_66	457412.RSAG_01162	95.5	5.78e-23	YopX protein	N/A
Pfam	UHGV-0393008_66	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0393008_66	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0393008_66	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0393008_67	phrog_20593	41.2	0.000000000024	N/A	unknown function