UHGV-0398974 (vOTU-032850)

Viral Genome: UHGV-0398974

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0398974
vOTU ID	vOTU-032850
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS698742\|NODE_8_length_40494_cov_26.917505
Associated BioSample	SAMEA3323708
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.34 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9804
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.06
Jumbo phage	No

Genome content
Genome length (bp)	40,494
GC content	41.45%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	92%
Average CDS length (bps)	593.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0398974_1	phrog_7964	106.4	2.3e-31	N/A	unknown function
UniRef90	UHGV-0398974_1	UniRef90_A0A412PKE0	62.8	0.000000000037	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0398974_1	1280692.AUJL01000011_gene3221	87.8	6.31e-22	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0398974_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
PHROG	UHGV-0398974_3	phrog_270	96.9	3e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0398974_3	UniRef90_UPI0015D10FB3	66.6	0.00000000151	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0398974_3	1449126.JQKL01000003_gene1705	73.2	0.00000000000168	ROK family	N/A
COG	UHGV-0398974_3	COG3355	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-0398974_3	PF01978,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_4	phrog_72	65.4	7.1e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0398974_4	UniRef90_UPI000C7BF263	78.2	0.00000000000000524	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0398974_4	1304866.K413DRAFT_1197	143.0	3.45e-41	N/A	N/A
structural_annotation	UHGV-0398974_4	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_6	phrog_14970	271.5	0	N/A	unknown function
UniRef90	UHGV-0398974_6	UniRef90_A0A015RRM9	200.0	0	Rad52/22 double-strand break repair family protein	N/A
eggNOG-mapper	UHGV-0398974_6	272562.CA_C1936	213.0	0	double-strand break repair protein	N/A
Pfam	UHGV-0398974_6	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-0398974_6	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0398974_6	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_7	phrog_253	102.8	3.5e-30	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0398974_7	UniRef90_UPI001C3A3B51	135.0	9.99e-38	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0398974_7	699218.HMPREF0889_0310	113.0	8.61e-30	Siphovirus Gp157	N/A
Pfam	UHGV-0398974_7	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0398974_7	PF05565,NF002139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0398974_11	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0398974_13	K07729	61.3	2.1e-17	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0398974_13	phrog_3	48.9	0.00000000000027	transcriptional repressor	transcription regulation
UniRef90	UHGV-0398974_13	UniRef90_UPI000A380519	62.4	0.000000000015	helix-turn-helix domain-containing protein	N/A
PADLOC	UHGV-0398974_13	retron_type_VI_hth_cluster2_1	50.1	0.000000000000079	N/A	Retron
Pfam	UHGV-0398974_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0398974_13	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0398974_13	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0398974_14	K22299	57.0	4.6e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
UniRef90	UHGV-0398974_14	UniRef90_I9DJR8	123.0	1.25e-33	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0398974_14	1027292.HMPREF9372_3406	62.0	0.000000000177	Helix-turn-helix	N/A
Pfam	UHGV-0398974_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0398974_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0398974_14	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_15	phrog_87	58.3	9.7e-17	metallo-protease	other
UniRef90	UHGV-0398974_15	UniRef90_UPI001032CAF7	280.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0398974_15	679201.HMPREF9334_00293	122.0	3.83e-34	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0398974_15	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0398974_15	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0398974_15	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0398974_17	K14059	254.9	0	int; integrase	N/A
PHROG	UHGV-0398974_17	phrog_1	209.0	0	integrase	integration and excision
UniRef90	UHGV-0398974_17	UniRef90_A0A8B2QR13	719.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0398974_17	1262914.BN533_00811	216.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0398974_17	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0398974_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0398974_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0398974_17	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_19	phrog_3996	91.1	9.2e-27	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0398974_19	UniRef90_S7IX76	79.0	3.37e-16	Putative inner membrane protein	N/A
eggNOG-mapper	UHGV-0398974_19	1273103.NM10_11541	79.0	5.66e-17	N/A	N/A
Pfam	UHGV-0398974_19	PF10097	N/A	N/A	N/A	DUF2335
COG	UHGV-0398974_19	COG5346	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0398974_21	373903.Hore_18550	90.5	1.55e-20	Peptidoglycan-binding domain 1 protein	N/A
COG	UHGV-0398974_21	COG1376	N/A	N/A	Lipoprotein-anchoring transpeptidase ErfK/SrfK	N/A
structural_annotation	UHGV-0398974_21	PF03734,NF007563,COG1376	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_22	phrog_199	67.7	1.3e-19	holin	lysis
UniRef90	UHGV-0398974_22	UniRef90_UPI001032AD47	303.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0398974_22	1120985.AUMI01000001_gene2154	98.2	4.16e-24	Bacteriophage holin family	N/A
Pfam	UHGV-0398974_22	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0398974_22	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0398974_22	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0398974_22	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_23	phrog_2837	48.4	0.00000000000014	tail protein	tail
UniRef90	UHGV-0398974_23	UniRef90_UPI001032F78F	313.0	0	N/A	N/A
eggNOG-mapper	UHGV-0398974_23	1120985.AUMI01000001_gene2155	58.9	0.0000000193	N/A	N/A
Pfam	UHGV-0398974_23	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0398974_23	PF14301	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0398974_25	476272.RUMHYD_01994	58.5	0.00000128	N/A	N/A
UniRef90	UHGV-0398974_26	UniRef90_UPI001C3783F9	51.6	0.000000191	YHYH domain-containing protein	N/A
NCBIFam	UHGV-0398974_26	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0398974_26	COG2356	N/A	N/A	Endonuclease I	N/A
UniRef90	UHGV-0398974_27	UniRef90_R6XVI4	99.0	1.98e-23	Inner membrane protein YhaI	N/A
eggNOG-mapper	UHGV-0398974_27	626939.HMPREF9443_00399	69.3	0.00000000000298	N/A	N/A
Pfam	UHGV-0398974_27	PF05656	N/A	N/A	N/A	DUF805
COG	UHGV-0398974_27	COG3152	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_28	phrog_9880	421.6	0	N/A	unknown function
UniRef90	UHGV-0398974_28	UniRef90_A0A412X674	1751.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0398974_28	1123288.SOV_1c10750	402.0	0	N/A	N/A
Pfam	UHGV-0398974_28	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-0398974_29	UniRef90_A0A1Q6RQM5	263.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0398974_29	1123288.SOV_2c10740	198.0	0	N/A	N/A
Pfam	UHGV-0398974_29	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
PHROG	UHGV-0398974_31	phrog_308	42.7	0.0000000000096	internal virion protein	head and packaging
PHROG	UHGV-0398974_32	phrog_376	331.2	0	tail protein	tail
UniRef90	UHGV-0398974_32	UniRef90_A0A6H1Q5T7	181.0	1.4013e-45	Tail tubular protein B	N/A
eggNOG-mapper	UHGV-0398974_32	568816.Acin_1828	286.0	0	N/A	N/A
structural_annotation	UHGV-0398974_32	PF04053,PF13157,MF_03056,NF038015,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_33	phrog_376	125.5	3.7e-37	tail protein	tail
eggNOG-mapper	UHGV-0398974_33	76869.PputGB1_1755	78.6	0.000000000000213	N/A	N/A
PHROG	UHGV-0398974_34	phrog_394	97.1	1.7e-28	tail protein	tail
eggNOG-mapper	UHGV-0398974_34	883080.HMPREF9697_04026	56.2	0.000000526	N/A	N/A
structural_annotation	UHGV-0398974_34	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_37	phrog_212	91.0	0	major head protein	head and packaging
UniRef90	UHGV-0398974_37	UniRef90_A0A077DE24	223.0	0	N/A	N/A
eggNOG-mapper	UHGV-0398974_37	520999.PROVALCAL_01883	226.0	0	N/A	N/A
Pfam	UHGV-0398974_37	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0398974_37	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_39	phrog_528	55.7	5.6e-16	N/A	unknown function
PHROG	UHGV-0398974_40	phrog_332	284.1	0	head-tail adaptor	connector
UniRef90	UHGV-0398974_40	UniRef90_UPI0010329B07	1086.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0398974_40	568816.Acin_1834	234.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0398974_40	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0398974_40	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_42	phrog_5902	221.0	0	N/A	unknown function
UniRef90	UHGV-0398974_42	UniRef90_UPI001032D579	984.0	0	terminase	N/A
eggNOG-mapper	UHGV-0398974_42	1200557.JHWV01000001_gene277	491.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0398974_42	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0398974_42	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_43	phrog_606	84.6	1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0398974_43	UniRef90_A0A843HSC6	108.0	8.8e-28	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0398974_43	935837.JAEK01000054_gene1463	122.0	1.79e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-0398974_43	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0398974_43	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_46	phrog_419	84.3	1.9e-24	N/A	unknown function
UniRef90	UHGV-0398974_46	UniRef90_A0A0V8CZM6	107.0	1.84e-28	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0398974_46	476272.RUMHYD_03324	107.0	3.18e-29	N/A	N/A
structural_annotation	UHGV-0398974_46	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_47	phrog_36	76.5	4.3e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0398974_47	UniRef90_A0A7X2XHL2	251.0	0	N/A	N/A
eggNOG-mapper	UHGV-0398974_47	994573.T472_0214010	60.8	0.000000000731	sigma factor activity	N/A
Pfam	UHGV-0398974_47	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0398974_47	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0398974_47	PF07374,MF_00245,TIGR02980,COG2739	N/A	N/A	N/A	N/A
Pfam	UHGV-0398974_48	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
COG	UHGV-0398974_48	COG1309	N/A	N/A	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	N/A
structural_annotation	UHGV-0398974_48	PF13384	N/A	N/A	N/A	N/A
KOfam	UHGV-0398974_49	K03111	142.4	4.79945e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0398974_49	phrog_44	144.3	7.10458e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0398974_49	UniRef90_UPI000F0C363F	248.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0398974_49	1262914.BN533_00181	195.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0398974_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0398974_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0398974_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0398974_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0398974_49	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_53	phrog_2999	45.4	0.0000000000018	N/A	unknown function
PHROG	UHGV-0398974_56	phrog_8538	64.4	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0398974_56	1009370.ALO_12631	67.4	0.00000000000284	N/A	N/A
PHROG	UHGV-0398974_57	phrog_190	132.3	2.6e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0398974_57	UniRef90_A0A7X2XHL8	279.0	0	N/A	N/A
eggNOG-mapper	UHGV-0398974_57	1009370.ALO_12696	102.0	3.37e-26	N/A	N/A
Pfam	UHGV-0398974_57	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0398974_57	PF06356,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-0398974_61	phrog_1008	96.4	1.7e-29	DNA methyltransferase	other
UniRef90	UHGV-0398974_61	UniRef90_E6X1S7	76.6	0.0000000000036	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0398974_61	521098.Aaci_0567	160.0	2.38221e-44	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0398974_61	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0398974_63	phrog_20532	61.6	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0398974_63	1232443.BAIA02000066_gene981	84.0	3.74e-19	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0398974_63	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A