UHGV-0400856 (vOTU-100277)

Viral Genome: UHGV-0400856

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0400856
vOTU ID	vOTU-100277
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS698731\|NODE_17_length_32368_cov_16.059543
Associated BioSample	SAMEA3323697
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.02
Jumbo phage	No

Genome content
Genome length (bp)	32,368
GC content	58.31%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	92%
Average CDS length (bps)	722.56
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0400856_2	phrog_309	191.5	0	terminase small subunit	head and packaging
UniRef90	UHGV-0400856_2	UniRef90_A0A1C7FRC2	235.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0400856_2	1408437.JNJN01000045_gene597	194.0	0	HNH endonuclease	N/A
Pfam	UHGV-0400856_2	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0400856_2	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0400856_2	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0400856_3	K21523	42.1	1.8e-17	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0400856_3	phrog_24361	98.3	6.5e-29	terminase	head and packaging
UniRef90	UHGV-0400856_3	UniRef90_R5AHR8	579.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-0400856_3	693746.OBV_23980	528.0	0	phage Terminase large subunit	N/A
COG	UHGV-0400856_3	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0400856_3	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_4	phrog_156	297.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0400856_4	1519439.JPJG01000060_gene1886	672.0	0	N/A	N/A
structural_annotation	UHGV-0400856_4	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_6	phrog_35275	166.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0400856_6	1226322.HMPREF1545_03846	142.0	3.14e-37	N/A	N/A
PHROG	UHGV-0400856_7	phrog_24113	241.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0400856_7	1226322.HMPREF1545_03847	245.0	0	N/A	N/A
structural_annotation	UHGV-0400856_7	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_8	phrog_371	176.2	0	major head protein	head and packaging
UniRef90	UHGV-0400856_8	UniRef90_R6TFU9	339.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0400856_8	1226322.HMPREF1545_03848	524.0	0	N/A	N/A
Pfam	UHGV-0400856_8	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0400856_8	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_9	phrog_12105	126.6	1.1e-37	N/A	unknown function
eggNOG-mapper	UHGV-0400856_9	1226322.HMPREF1545_03850	111.0	4.86e-30	N/A	N/A
KOfam	UHGV-0400856_10	K06823	72.2	1.9e-21	COL18A; collagen type XVIII alpha	N/A
PHROG	UHGV-0400856_10	phrog_5073	101.1	1.4e-29	tail fiber protein	tail
eggNOG-mapper	UHGV-0400856_10	756499.Desde_1105	86.3	0.0000000000000329	N/A	N/A
Pfam	UHGV-0400856_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0400856_11	phrog_24451	61.4	1.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0400856_11	2754.EH55_13280	61.2	0.000000000744	N/A	N/A
PHROG	UHGV-0400856_12	phrog_2310	62.4	3.6e-18	N/A	unknown function
KOfam	UHGV-0400856_13	K01448	182.8	0	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0400856_13	phrog_18955	388.5	0	N/A	unknown function
UniRef90	UHGV-0400856_13	UniRef90_A0A1C7FQI4	807.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0400856_13	1226322.HMPREF1545_00782	261.0	0	N/A	N/A
Pfam	UHGV-0400856_13	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0400856_13	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0400856_13	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0400856_13	PF01520,PF09992,MF_00417,TIGR02883,COG0860,COG4632	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_14	phrog_1129	77.4	1.1e-22	holin	lysis
UniRef90	UHGV-0400856_14	UniRef90_A0A1C7FPV3	162.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0400856_14	1226322.HMPREF1545_00069	141.0	8.89825e-43	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0400856_14	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0400856_14	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_15	phrog_4105	83.4	2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0400856_15	537013.CLOSTMETH_01753	83.2	2.79e-19	N/A	N/A
PHROG	UHGV-0400856_16	phrog_16040	48.4	0.000000000000051	virion structural protein	head and packaging
UniRef90	UHGV-0400856_16	UniRef90_A0A174SCI3	508.0	0	Reovirus sigma C capsid protein	N/A
eggNOG-mapper	UHGV-0400856_16	1226322.HMPREF1545_00783	81.6	0.0000000000000237	Chaperone of endosialidase	N/A
eggNOG-mapper	UHGV-0400856_17	1227349.C170_22575	71.2	0.00000000000362	Fibronectin type 3 domain	N/A
COG	UHGV-0400856_17	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0400856_17	PF17166,NF038367,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_19	phrog_511	248.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0400856_19	1519439.JPJG01000060_gene1903	609.0	0	N/A	N/A
structural_annotation	UHGV-0400856_19	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0400856_20	1226322.HMPREF1545_00786	219.0	0	N/A	N/A
UniRef90	UHGV-0400856_21	UniRef90_U2AS96	1798.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0400856_21	693746.OBV_01590	600.0	0	N/A	N/A
UniRef90	UHGV-0400856_22	UniRef90_A0A1C6JAI6	63.9	0.0000000000136	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-0400856_22	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0400856_24	phrog_3754	95.9	4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0400856_24	476272.RUMHYD_01764	169.0	0	N/A	N/A
PHROG	UHGV-0400856_25	phrog_21718	123.1	1.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-0400856_25	397290.C810_05210	73.2	0.0000000000000408	N/A	N/A
PHROG	UHGV-0400856_26	phrog_22984	114.1	5.3e-34	N/A	unknown function
PHROG	UHGV-0400856_27	phrog_16490	285.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0400856_27	1226322.HMPREF1545_00076	192.0	0	N/A	N/A
PHROG	UHGV-0400856_28	phrog_20016	227.1	0	N/A	unknown function
UniRef90	UHGV-0400856_28	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0400856_28	1226322.HMPREF1545_00077	235.0	0	N/A	N/A
structural_annotation	UHGV-0400856_28	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0400856_29	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0400856_30	K14059	140.2	2.50006e-41	int; integrase	N/A
PHROG	UHGV-0400856_30	phrog_1	145.5	4.40008e-43	integrase	integration and excision
UniRef90	UHGV-0400856_30	UniRef90_A0A174DBH0	694.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0400856_30	1514668.JOOA01000001_gene242	161.0	7.28675e-44	Phage integrase family	N/A
Pfam	UHGV-0400856_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0400856_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0400856_30	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0400856_31	203119.Cthe_2752	68.6	0.000000000496	Metallo-beta-lactamase domain protein	N/A
COG	UHGV-0400856_31	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
structural_annotation	UHGV-0400856_31	PF10754	N/A	N/A	N/A	N/A
KOfam	UHGV-0400856_33	K22299	60.7	3.2e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0400856_33	phrog_8	79.2	7.4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0400856_33	UniRef90_A0A0X8D5S2	85.9	1.76e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0400856_33	632335.Calkr_0667	84.0	4.94e-18	SMART helix-turn-helix domain protein	N/A
PADLOC	UHGV-0400856_33	retron_type_VI_hth_cluster2_1	40.2	0.00000000009	N/A	Retron
Pfam	UHGV-0400856_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0400856_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0400856_33	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0400856_34	UniRef90_A0A346B136	60.5	0.000000000118	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0400856_34	935948.KE386495_gene1357	52.0	0.0000000637	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0400856_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0400856_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0400856_35	PF03885	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0400856_37	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A