UHGV-0400862 (vOTU-052686)

Viral Genome: UHGV-0400862

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0400862
vOTU ID	vOTU-052686
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS698731\|NODE_15_length_35688_cov_27.091629
Associated BioSample	SAMEA3323697
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9703
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.78
Jumbo phage	No

Genome content
Genome length (bp)	35,633
GC content	32.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	91%
Average CDS length (bps)	538.25
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0400862_1	phrog_8470	144.3	7.59504e-43	N/A	unknown function
UniRef90	UHGV-0400862_1	UniRef90_A0A849YCV8	885.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0400862_1	1232449.BAHV02000018_gene1540	85.9	0.00000000000000414	PcfJ-like protein	N/A
Pfam	UHGV-0400862_1	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0400862_1	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_5	phrog_10714	43.8	0.0000000000038	N/A	unknown function
structural_annotation	UHGV-0400862_8	PF17020,NF005100	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_9	phrog_12650	68.7	4.9e-20	N/A	unknown function
structural_annotation	UHGV-0400862_9	NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_10	phrog_478	96.5	2e-28	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0400862_10	UniRef90_A0A0J8Z1B9	240.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-0400862_10	633135.C9WBA6_9CAUD	75.9	6.67e-16	exonuclease activity	N/A
Pfam	UHGV-0400862_10	PF08139	N/A	N/A	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
KOfam	UHGV-0400862_13	K07474	106.3	5.7e-31	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0400862_13	phrog_51	124.5	7.9e-37	terminase small subunit	head and packaging
UniRef90	UHGV-0400862_13	UniRef90_A0A1C6BK03	269.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0400862_13	1504823.CCMM01000008_gene1049	224.0	0	DNA packaging	N/A
Pfam	UHGV-0400862_13	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0400862_13	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0400862_13	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0400862_14	K06909	372.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0400862_14	phrog_3717	168.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0400862_14	UniRef90_A0A417IN81	829.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0400862_14	1504823.CCMM01000008_gene1048	819.0	0	DNA packaging	N/A
Pfam	UHGV-0400862_14	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0400862_14	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0400862_14	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0400862_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0400862_14	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_15	phrog_64	429.9	0	portal protein	head and packaging
UniRef90	UHGV-0400862_15	UniRef90_A0A1C6BKT4	936.0	0	Phage portal protein, SPP1 family	N/A
eggNOG-mapper	UHGV-0400862_15	1504823.CCMM01000008_gene1047	791.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0400862_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-0400862_15	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-0400862_15	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_16	phrog_115	311.3	0	minor head protein	head and packaging
UniRef90	UHGV-0400862_16	UniRef90_A0A1C6BL31	1029.0	0	NAD(+)--arginine ADP-ribosyltransferase EFV	N/A
eggNOG-mapper	UHGV-0400862_16	1504823.CCMM01000008_gene1046	631.0	0	cell adhesion	N/A
Pfam	UHGV-0400862_16	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0400862_16	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
NCBIFam	UHGV-0400862_16	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-0400862_16	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0400862_16	PF15542,PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_17	phrog_1865	54.2	0.0000000000000021	N/A	unknown function
structural_annotation	UHGV-0400862_17	PF07073,MF_01077,NF037951,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_18	phrog_30609	50.0	0.000000000000063	N/A	unknown function
structural_annotation	UHGV-0400862_18	PF21485	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_20	phrog_172	168.6	0	head scaffolding protein	head and packaging
UniRef90	UHGV-0400862_20	UniRef90_UPI000E403C16	262.0	0	N/A	N/A
eggNOG-mapper	UHGV-0400862_20	1211844.CBLM010000016_gene1492	209.0	0	N/A	N/A
Pfam	UHGV-0400862_20	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0400862_20	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_21	phrog_422	304.7	0	major head protein	head and packaging
UniRef90	UHGV-0400862_21	UniRef90_A0A2H4JCM6	423.0	0	Putative capsid protein	N/A
eggNOG-mapper	UHGV-0400862_21	742733.HMPREF9469_01823	436.0	0	N/A	N/A
structural_annotation	UHGV-0400862_21	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_22	phrog_2724	57.0	4e-16	N/A	unknown function
UniRef90	UHGV-0400862_22	UniRef90_A0A1C5TV19	154.0	0	Transcription termination factor Rho	N/A
Pfam	UHGV-0400862_22	PF07498	N/A	N/A	Rho termination factor, N-terminal domain	Rho_N
structural_annotation	UHGV-0400862_22	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_23	phrog_132	63.7	2.3e-18	head-tail adaptor	connector
UniRef90	UHGV-0400862_23	UniRef90_A0A1C6BLH2	201.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0400862_23	1504823.CCMM01000008_gene1039	153.0	0	N/A	N/A
Pfam	UHGV-0400862_23	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0400862_23	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_24	phrog_2168	81.9	5.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0400862_24	1211844.CBLM010000016_gene1488	126.0	7.64e-37	N/A	N/A
structural_annotation	UHGV-0400862_24	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_25	phrog_5	86.3	3.8e-25	tail completion or Neck1 protein	connector
UniRef90	UHGV-0400862_25	UniRef90_A0A1C5TVK4	353.0	0	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0400862_25	1504823.CCMM01000008_gene1037	278.0	0	N/A	N/A
Pfam	UHGV-0400862_25	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0400862_25	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0400862_25	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_26	phrog_78	61.2	1.9e-17	tail terminator	connector
eggNOG-mapper	UHGV-0400862_26	1504823.CCMM01000008_gene1036	206.0	0	N/A	N/A
structural_annotation	UHGV-0400862_26	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_27	phrog_158	65.6	1.1e-18	major tail protein	tail
UniRef90	UHGV-0400862_27	UniRef90_A0A1C5TB95	237.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0400862_27	1504823.CCMM01000008_gene1035	237.0	0	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0400862_27	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_28	phrog_183	71.5	1.2e-20	tail chaperone protein	tail
UniRef90	UHGV-0400862_28	UniRef90_UPI000487273D	192.0	0	N/A	N/A
eggNOG-mapper	UHGV-0400862_28	1504823.CCMM01000008_gene1034	239.0	0	N/A	N/A
Pfam	UHGV-0400862_28	PF19591	N/A	N/A	N/A	DUF6096
structural_annotation	UHGV-0400862_28	PF19591	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_29	phrog_1535	243.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0400862_29	UniRef90_A0A1C5TVU6	1464.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0400862_29	1504823.CCMM01000008_gene1032	1222.0	0	phage tail tape measure protein	N/A
COG	UHGV-0400862_29	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0400862_29	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_30	phrog_1194	81.3	1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0400862_30	1504823.CCMM01000008_gene1031	229.0	0	N/A	N/A
Pfam	UHGV-0400862_30	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0400862_30	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_31	phrog_38044	59.8	7.6e-18	N/A	unknown function
UniRef90	UHGV-0400862_31	UniRef90_G9QXA6	759.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0400862_31	445974.CLORAM_02919	753.0	0	cellulase activity	N/A
COG	UHGV-0400862_31	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-0400862_32	phrog_30133	113.6	0	virion structural protein	head and packaging
UniRef90	UHGV-0400862_32	UniRef90_I7ARM6	293.0	0	N/A	N/A
eggNOG-mapper	UHGV-0400862_32	1504823.CCMM01000008_gene1029	465.0	0	N/A	N/A
structural_annotation	UHGV-0400862_32	PF14874,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_33	phrog_819	103.7	1.5e-30	tail protein	tail
UniRef90	UHGV-0400862_33	UniRef90_A0A3E3AC96	134.0	1.54e-36	Collagen-like protein (Fragment)	N/A
eggNOG-mapper	UHGV-0400862_33	445974.CLORAM_02919	212.0	0	cellulase activity	N/A
COG	UHGV-0400862_33	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0400862_33	PF20986	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_34	phrog_372	201.0	0	tail protein	tail
UniRef90	UHGV-0400862_34	UniRef90_UPI000E5CC2C3	133.0	6.51e-30	N/A	N/A
eggNOG-mapper	UHGV-0400862_34	445974.CLORAM_02918	401.0	0	N/A	N/A
Pfam	UHGV-0400862_34	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0400862_34	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0400862_34	PF05895,MF_04116,NF010681,COG3401	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0400862_35	445974.CLORAM_02918	67.0	0.0000000000478	N/A	N/A
COG	UHGV-0400862_35	COG4675	N/A	N/A	Phage tail collar domain	N/A
eggNOG-mapper	UHGV-0400862_37	445974.CLORAM_02918	65.1	0.000000000158	N/A	N/A
COG	UHGV-0400862_37	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0400862_38	PF12961,MF_00771,NF002617,COG3215	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_39	phrog_199	100.8	1.3e-29	holin	lysis
UniRef90	UHGV-0400862_39	UniRef90_UPI001D0B7445	204.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0400862_39	1504823.CCMM01000008_gene1022	257.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0400862_39	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0400862_39	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0400862_39	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0400862_39	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_40	phrog_872	73.3	4.1e-21	N/A	unknown function
UniRef90	UHGV-0400862_40	UniRef90_A0A3R6QU45	110.0	2.37e-28	N/A	N/A
eggNOG-mapper	UHGV-0400862_40	397290.C810_05225	109.0	3.2e-29	N/A	N/A
dbAPIS	UHGV-0400862_40	APIS052	N/A	N/A	N/A	N/A
KOfam	UHGV-0400862_41	K01446	85.1	7e-25	PGRP; peptidoglycan recognition protein	N/A
PHROG	UHGV-0400862_41	phrog_35436	161.5	0	amidase	lysis
UniRef90	UHGV-0400862_41	UniRef90_UPI00041018D3	237.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0400862_41	1504823.CCMM01000008_gene1019	441.0	0	Ami_2	N/A
Pfam	UHGV-0400862_41	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0400862_41	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0400862_41	PF01510,PF18342,MF_04111,NF008758,COG3023,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_46	phrog_14088	44.1	0.0000000000021	N/A	unknown function
UniRef90	UHGV-0400862_49	UniRef90_A0A849Y6G8	259.0	0	Helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0400862_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0400862_53	phrog_3584	260.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0400862_53	UniRef90_A0A4P8IFK4	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-0400862_53	1321814.HMPREF9089_00921	268.0	0	N/A	N/A
structural_annotation	UHGV-0400862_53	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0400862_54	K04763	158.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0400862_54	phrog_1	142.5	4.1002e-42	integrase	integration and excision
UniRef90	UHGV-0400862_54	UniRef90_A0A849Y9V8	505.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0400862_54	908340.HMPREF9406_2589	165.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0400862_54	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0400862_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0400862_54	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0400862_54	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0400862_58	phrog_4433	72.1	8.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0400862_58	305700.B447_10693	65.1	0.000000000118	Flagellar Assembly Protein A	N/A
COG	UHGV-0400862_58	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
Pfam	UHGV-0400862_59	PF14058	N/A	N/A	PcfK-like protein	PcfK