UHGV-0403997 (vOTU-115459)

Viral Genome: UHGV-0403997

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0403997
vOTU ID	vOTU-115459
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4985
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.26 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9809
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.33
Jumbo phage	No

Genome content
Genome length (bp)	23,260
GC content	47.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	27
CDS density	91%
Average CDS length (bps)	787.11
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 59.26)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0403997_1	phrog_22978	64.2	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0403997_1	1321782.HMPREF1986_00356	249.0	0	N/A	N/A
UniRef90	UHGV-0403997_2	UniRef90_A0A396K636	246.0	0	N/A	N/A
eggNOG-mapper	UHGV-0403997_2	1410650.JHWL01000003_gene2815	101.0	1.22e-20	N/A	N/A
PHROG	UHGV-0403997_3	phrog_5668	52.8	0.0000000000000029	tail fiber protein	tail
UniRef90	UHGV-0403997_3	UniRef90_A0A3R6TVI8	581.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0403997_3	742733.HMPREF9469_01807	99.8	2.03e-20	N/A	N/A
Pfam	UHGV-0403997_3	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0403997_3	NF041249	N/A	N/A	N/A	N/A
UniRef90	UHGV-0403997_4	UniRef90_A0A3R6V2R9	451.0	0	Tail fiber domain-containing protein	N/A
Pfam	UHGV-0403997_4	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0403997_4	NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_5	phrog_511	210.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0403997_5	1321782.HMPREF1986_00351	421.0	0	N/A	N/A
structural_annotation	UHGV-0403997_5	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_6	phrog_12105	103.7	1.4e-30	N/A	unknown function
KOfam	UHGV-0403997_7	K17733	154.0	1.4013e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0403997_7	phrog_2649	132.6	3.8e-39	endolysin	lysis
UniRef90	UHGV-0403997_7	UniRef90_A0A3R6TWE4	412.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0403997_7	397290.C810_03258	214.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0403997_7	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
Pfam	UHGV-0403997_7	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-0403997_7	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0403997_7	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_8	phrog_918	131.0	2.5e-39	N/A	unknown function
UniRef90	UHGV-0403997_8	UniRef90_UPI00115A7D93	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-0403997_8	469618.FVAG_01307	140.0	2.17061e-42	N/A	N/A
Pfam	UHGV-0403997_8	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0403997_8	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_9	phrog_1048	166.2	0	N/A	unknown function
UniRef90	UHGV-0403997_9	UniRef90_A0A416L221	340.0	0	N/A	N/A
eggNOG-mapper	UHGV-0403997_9	457412.RSAG_01107	250.0	0	N/A	N/A
Pfam	UHGV-0403997_9	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0403997_9	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0403997_9	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_10	phrog_355	65.5	6.5e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0403997_10	UniRef90_A0A417BWH3	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0403997_10	97138.C820_00250	124.0	1.26e-35	N/A	N/A
Pfam	UHGV-0403997_10	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0403997_10	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_11	phrog_1129	76.0	3.2e-22	holin	lysis
UniRef90	UHGV-0403997_11	UniRef90_A0A3R6U6I1	163.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0403997_11	742740.HMPREF9474_03522	103.0	4.45e-28	N/A	N/A
Pfam	UHGV-0403997_11	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0403997_11	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_12	phrog_4105	44.0	0.0000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0403997_12	657322.FPR_27220	68.6	0.0000000000000531	N/A	N/A
UniRef90	UHGV-0403997_14	UniRef90_A0A3R6QNF9	67.8	0.0000000000000191	ASCH domain-containing protein	N/A
NCBIFam	UHGV-0403997_14	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0403997_14	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_15	phrog_12931	79.1	4.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0403997_15	1298920.KI911353_gene2672	85.5	2.26e-19	N/A	N/A
PHROG	UHGV-0403997_17	phrog_25888	120.0	1.4e-35	N/A	unknown function
UniRef90	UHGV-0403997_17	UniRef90_A0A3R6NAE3	409.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0403997_17	1304866.K413DRAFT_3052	78.6	0.000000000000381	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0403997_17	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0403997_18	phrog_15239	83.5	1.5e-24	N/A	unknown function
PHROG	UHGV-0403997_19	phrog_1357	288.6	0	major head protein	head and packaging
UniRef90	UHGV-0403997_19	UniRef90_A0A3R6TVJ6	650.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0403997_19	1203606.HMPREF1526_02746	323.0	0	N/A	N/A
Pfam	UHGV-0403997_19	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0403997_19	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0403997_19	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_20	phrog_13908	244.6	0	N/A	unknown function
UniRef90	UHGV-0403997_20	UniRef90_A0A174CZ20	118.0	9.61e-27	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0403997_20	748224.HMPREF9436_01398	91.3	7.87e-18	Cysteine protease Prp	N/A
COG	UHGV-0403997_20	COG2868	N/A	N/A	N/A	N/A
KOfam	UHGV-0403997_21	K07584	49.7	0.000000000000074	N/A	N/A
PHROG	UHGV-0403997_21	phrog_4478	64.1	1.6e-18	peptidase	other
UniRef90	UHGV-0403997_21	UniRef90_A0A417BWI8	205.0	0	Ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0403997_21	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0403997_21	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0403997_21	NF011130,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_22	phrog_156	335.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0403997_22	748224.HMPREF9436_01396	507.0	0	N/A	N/A
structural_annotation	UHGV-0403997_22	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0403997_23	K06909	116.4	2.7e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0403997_23	phrog_979	204.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0403997_23	UniRef90_A0A3R6NVR9	966.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0403997_23	748224.HMPREF9436_02548	625.0	0	Terminase-like family	N/A
Pfam	UHGV-0403997_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0403997_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0403997_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0403997_24	phrog_309	54.8	0.0000000000000017	terminase small subunit	head and packaging
UniRef90	UHGV-0403997_24	UniRef90_UPI001A9AF3C1	218.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0403997_24	1567014.A0A0A7RTX1_9VIRU	70.9	0.000000000000103	N/A	N/A
PHROG	UHGV-0403997_26	phrog_3584	181.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0403997_26	1321782.HMPREF1986_00335	229.0	0	N/A	N/A
structural_annotation	UHGV-0403997_26	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0403997_27	K04763	185.3	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0403997_27	phrog_1	148.2	7.28675e-44	integrase	integration and excision
UniRef90	UHGV-0403997_27	UniRef90_UPI00045E81AF	365.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0403997_27	1298920.KI911353_gene2699	365.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0403997_27	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0403997_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0403997_27	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0403997_27	PF00589,PF13495,MF_01808,NF001399,COG4974	N/A	N/A	N/A	N/A