UHGV-0404707 (vOTU-128868)

Viral Genome: UHGV-0404707

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0404707
vOTU ID	vOTU-128868
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS698738\|NODE_8_length_22214_cov_8.990117
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.5 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9712
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.5
Jumbo phage	No

Genome content
Genome length (bp)	22,214
GC content	40.08%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	36
CDS density	90%
Average CDS length (bps)	554.92
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.5)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0404707_2	phrog_749	75.1	6.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0404707_2	1235792.C808_00087	99.8	4.49e-26	N/A	N/A
PHROG	UHGV-0404707_3	phrog_19734	64.2	1.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-0404707_3	1235792.C808_00088	102.0	1.36e-26	N/A	N/A
structural_annotation	UHGV-0404707_3	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_4	phrog_5	50.4	0.000000000000054	tail completion or Neck1 protein	connector
UniRef90	UHGV-0404707_4	UniRef90_A0A4R3JAK0	161.0	0	Bacteriophage HK97-gp10 putative tail-component	N/A
eggNOG-mapper	UHGV-0404707_4	1384066.JAGT01000001_gene934	79.7	1.73e-17	N/A	N/A
Pfam	UHGV-0404707_4	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0404707_4	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_5	phrog_78	51.1	0.000000000000025	tail terminator	connector
eggNOG-mapper	UHGV-0404707_5	483218.BACPEC_01313	115.0	3.95e-32	N/A	N/A
structural_annotation	UHGV-0404707_5	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_6	phrog_88	131.3	6.2e-39	major tail protein	tail
UniRef90	UHGV-0404707_6	UniRef90_A0A2N5NUL1	348.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0404707_6	610130.Closa_0749	163.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0404707_6	TIGR01603.1	N/A	N/A	major tail protein	N/A
PHROG	UHGV-0404707_7	phrog_709	111.7	3.3e-33	N/A	unknown function
eggNOG-mapper	UHGV-0404707_7	879305.HMPREF9290_0132	119.0	6.26e-33	N/A	N/A
structural_annotation	UHGV-0404707_7	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_8	phrog_3033	58.4	1.1e-16	N/A	unknown function
UniRef90	UHGV-0404707_8	UniRef90_A0A2X2UJ60	68.9	0.0000000000000177	Phage-like protein	N/A
eggNOG-mapper	UHGV-0404707_8	1341157.RF007C_02605	72.0	1.79e-16	N/A	N/A
PHROG	UHGV-0404707_9	phrog_1533	442.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0404707_9	UniRef90_R5TQ69	1338.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0404707_9	903814.ELI_1307	404.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0404707_9	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0404707_9	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0404707_9	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0404707_9	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0404707_10	1235798.C817_04593	58.5	0.00000000171	phage tail	N/A
COG	UHGV-0404707_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
PHROG	UHGV-0404707_11	phrog_33	81.7	1.5e-23	distal tail protein Dit	tail
UniRef90	UHGV-0404707_11	UniRef90_UPI000E2F9A85	286.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0404707_11	1235798.C817_04593	233.0	0	phage tail	N/A
Pfam	UHGV-0404707_11	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0404707_11	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0404707_11	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0404707_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_12	phrog_13289	405.1	0	tail protein	tail
UniRef90	UHGV-0404707_12	UniRef90_A0A412C574	1220.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0404707_12	1235798.C817_02568	473.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0404707_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0404707_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0404707_12	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0404707_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_13	phrog_14030	167.1	0	N/A	unknown function
UniRef90	UHGV-0404707_13	UniRef90_A0A6N3GLP8	674.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0404707_13	33035.JPJF01000093_gene2240	367.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0404707_13	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
COG	UHGV-0404707_13	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0404707_13	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_14	phrog_21765	99.7	1.7e-29	N/A	unknown function
UniRef90	UHGV-0404707_14	UniRef90_UPI000E4B80F2	401.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0404707_14	97139.C824_05954	89.7	6.55e-17	N/A	N/A
PHROG	UHGV-0404707_15	phrog_16164	68.7	4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0404707_15	33035.JPJF01000093_gene2236	64.7	0.000000000221	N/A	N/A
structural_annotation	UHGV-0404707_15	PF10651,TIGR02657	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_16	phrog_24103	79.5	1.3e-24	N/A	unknown function
eggNOG-mapper	UHGV-0404707_16	420247.Msm_1688	76.3	0.000000000000282	N/A	N/A
structural_annotation	UHGV-0404707_17	PF08931	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_18	phrog_1863	82.1	3.4e-24	N/A	unknown function
eggNOG-mapper	UHGV-0404707_18	1232453.BAIF02000059_gene1610	101.0	1.54e-27	N/A	N/A
PHROG	UHGV-0404707_19	phrog_1129	91.3	4.7e-27	holin	lysis
UniRef90	UHGV-0404707_19	UniRef90_UPI00051B7422	157.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0404707_19	742733.HMPREF9469_05010	146.0	1.12104e-44	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0404707_19	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0404707_19	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0404707_22	K01447	64.9	1.6e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0404707_22	phrog_670	169.7	0	endolysin	lysis
UniRef90	UHGV-0404707_22	UniRef90_F7K158	463.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0404707_22	411470.RUMGNA_03787	445.0	0	COG NOG33632 non supervised orthologous group	N/A
Pfam	UHGV-0404707_22	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0404707_22	COG3772	N/A	N/A	Phage-related lysozyme (muramidase), GH24 family	N/A
structural_annotation	UHGV-0404707_22	PF01510,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0404707_23	K06400	210.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0404707_23	phrog_95	248.5	0	integrase	integration and excision
UniRef90	UHGV-0404707_23	UniRef90_A7B6L4	996.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0404707_23	411470.RUMGNA_03227	996.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0404707_23	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0404707_23	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0404707_23	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0404707_23	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0404707_23	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_24	phrog_2158	208.3	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0404707_24	UniRef90_A0A6N3DH69	682.0	0	Abi-like protein	N/A
eggNOG-mapper	UHGV-0404707_24	476272.RUMHYD_02820	528.0	0	Abi-like protein	N/A
PADLOC	UHGV-0404707_24	AbiD	119.9	4.7e-35	AbiD	Abi
Pfam	UHGV-0404707_24	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0404707_24	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0404707_24	PF07751,COG4823	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_26	phrog_87	66.7	2.2e-19	metallo-protease	other
UniRef90	UHGV-0404707_26	UniRef90_A0A414UZ15	282.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0404707_26	476272.RUMHYD_01733	130.0	4.16e-37	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0404707_26	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0404707_26	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0404707_26	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0404707_27	K22300	48.3	0.0000000000002	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0404707_27	phrog_8	60.0	5.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0404707_27	UniRef90_R5TY56	277.0	0	Toxin-antitoxin system antitoxin component Xre family	N/A
eggNOG-mapper	UHGV-0404707_27	411459.RUMOBE_00961	102.0	5.05e-26	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0404707_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0404707_27	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0404707_27	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_28	phrog_8	60.0	5.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0404707_28	UniRef90_R5TR53	127.0	1.48e-37	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0404707_28	411460.RUMTOR_02057	87.4	2.64e-22	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0404707_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0404707_28	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0404707_32	phrog_18248	60.5	2.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0404707_32	UniRef90_R6NXT3	118.0	6.37e-34	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0404707_32	665950.HMPREF1025_02561	81.6	4.81e-20	sequence-specific DNA binding	N/A
Pfam	UHGV-0404707_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0404707_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0404707_32	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0404707_35	NF037954	N/A	N/A	N/A	N/A