UHGV-0416760 (vOTU-089556)

Viral Genome: UHGV-0416760

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0416760
vOTU ID	vOTU-089556
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS698723\|NODE_23_length_25394_cov_9.468606
Associated BioSample	SAMEA3323689
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.59 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9761
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.09
Jumbo phage	No

Genome content
Genome length (bp)	25,394
GC content	44.61%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	89%
Average CDS length (bps)	473.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 58.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0416760_1	phrog_19074	620.6	0	N/A	unknown function
UniRef90	UHGV-0416760_1	UniRef90_UPI0019234AB5	1711.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0416760_1	1203606.HMPREF1526_01348	305.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0416760_1	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0416760_1	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0416760_1	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0416760_1	PF10145,PF12026,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_2	phrog_46	55.2	8.7e-16	tail protein	tail
UniRef90	UHGV-0416760_2	UniRef90_D6DIU8	117.0	2.08e-33	Phage Tail Protein X	N/A
eggNOG-mapper	UHGV-0416760_2	97139.C824_03368	70.1	0.00000000000000454	N/A	N/A
Pfam	UHGV-0416760_2	PF05489	N/A	N/A	Phage Tail Protein X	Phage_tail_X
structural_annotation	UHGV-0416760_2	PF05489,TIGR02899,COG5004	N/A	N/A	N/A	N/A
KOfam	UHGV-0416760_3	K06905	226.6	0	N/A	N/A
PHROG	UHGV-0416760_3	phrog_52	238.9	0	tail protein	tail
UniRef90	UHGV-0416760_3	UniRef90_U2DD48	642.0	0	LysM domain protein	N/A
eggNOG-mapper	UHGV-0416760_3	478749.BRYFOR_07549	206.0	0	COG3500 Phage protein D	N/A
COG	UHGV-0416760_3	COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0416760_3	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_4	phrog_6142	41.0	0.000000000023	baseplate assembly protein	tail
UniRef90	UHGV-0416760_4	UniRef90_U2C5Q0	256.0	0	Phage_base_V domain-containing protein	N/A
eggNOG-mapper	UHGV-0416760_4	610130.Closa_0852	117.0	4.1e-32	Baseplate assembly protein	N/A
Pfam	UHGV-0416760_4	PF04717	N/A	N/A	Type VI secretion system/phage-baseplate injector OB domain	Phage_base_V
COG	UHGV-0416760_4	COG4540	N/A	N/A	Phage P2 baseplate assembly protein gpV	N/A
structural_annotation	UHGV-0416760_4	PF01176,MF_00216,TIGR01644,COG4540	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_5	phrog_76	77.5	1.7e-22	tail protein	tail
UniRef90	UHGV-0416760_5	UniRef90_D6DIV0	192.0	0	Phage protein U	N/A
eggNOG-mapper	UHGV-0416760_5	610130.Closa_0853	145.0	4.316e-43	Phage P2 GpU	N/A
Pfam	UHGV-0416760_5	PF06995	N/A	N/A	Phage P2 GpU	Phage_P2_GpU
COG	UHGV-0416760_5	COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0416760_5	PF06995,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_6	phrog_43	47.9	0.00000000000016	baseplate wedge subunit	tail
UniRef90	UHGV-0416760_6	UniRef90_A0A7X5ICD6	64.7	0.0000000000157	GPW_gp25 domain-containing protein	N/A
eggNOG-mapper	UHGV-0416760_6	411464.DESPIG_00754	62.4	0.0000000000302	GPW Gp25 family protein	N/A
COG	UHGV-0416760_6	COG3628	N/A	N/A	Phage baseplate assembly protein W	N/A
PHROG	UHGV-0416760_7	phrog_6	251.3	0	baseplate protein	tail
UniRef90	UHGV-0416760_7	UniRef90_U2DIA1	735.0	0	Baseplate J-like protein	N/A
eggNOG-mapper	UHGV-0416760_7	610130.Closa_0855	410.0	0	baseplate J-like protein	N/A
Pfam	UHGV-0416760_7	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0416760_7	COG3948	N/A	N/A	Phage-related baseplate assembly protein	N/A
structural_annotation	UHGV-0416760_7	PF04865,PF21379,MF_04102,TIGR02243,COG3948	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_8	phrog_48	125.8	5.6e-37	tail protein	tail
UniRef90	UHGV-0416760_8	UniRef90_D6DIV1	370.0	0	Phage tail protein (Tail_P2_I)	N/A
eggNOG-mapper	UHGV-0416760_8	610130.Closa_0856	223.0	0	Phage tail protein (Tail_P2_I)	N/A
Pfam	UHGV-0416760_8	PF09684	N/A	N/A	Phage tail protein (Tail_P2_I)	Tail_P2_I
COG	UHGV-0416760_8	COG4385	N/A	N/A	Bacteriophage P2-related tail formation protein	N/A
structural_annotation	UHGV-0416760_8	PF09684,TIGR01634,COG4385	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_9	phrog_1780	58.1	1.1e-16	tail collar fiber protein	tail
UniRef90	UHGV-0416760_9	UniRef90_UPI0008BD6C3E	176.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0416760_9	610130.Closa_0857	185.0	0	Phage tail-collar fibre protein	N/A
eggNOG-mapper	UHGV-0416760_10	1304866.K413DRAFT_0769	119.0	1.17e-32	N/A	N/A
PHROG	UHGV-0416760_11	phrog_13589	80.4	1.1e-23	N/A	unknown function
UniRef90	UHGV-0416760_11	UniRef90_A0A174MXG6	142.0	4.4e-35	Putative phage tail fiber protein	N/A
eggNOG-mapper	UHGV-0416760_11	742740.HMPREF9474_03519	226.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0416760_11	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0416760_11	PF21253,NF038128	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0416760_12	742740.HMPREF9474_03519	189.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0416760_12	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0416760_13	phrog_1193	66.3	3.7e-19	hemolysin	other
UniRef90	UHGV-0416760_13	UniRef90_UPI0017834AC0	96.7	1.01e-24	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0416760_13	318464.IO99_03750	89.0	1.9e-22	Haemolysin XhlA	N/A
Pfam	UHGV-0416760_13	PF10779	N/A	N/A	Haemolysin XhlA	XhlA
PHROG	UHGV-0416760_14	phrog_1129	82.7	2.5e-24	holin	lysis
UniRef90	UHGV-0416760_14	UniRef90_U2D342	163.0	0	Holin family protein	N/A
eggNOG-mapper	UHGV-0416760_14	33035.JPJF01000043_gene995	134.0	5.13e-40	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0416760_14	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0416760_14	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_16	phrog_1009	41.0	0.000000000028	N/A	unknown function
UniRef90	UHGV-0416760_16	UniRef90_A0A3E2WI44	150.0	1.4013e-45	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-0416760_16	742740.HMPREF9474_03521	177.0	0	N/A	N/A
PHROG	UHGV-0416760_17	phrog_1129	73.9	1.4e-21	holin	lysis
UniRef90	UHGV-0416760_17	UniRef90_A0A2N0KEV2	153.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0416760_17	742740.HMPREF9474_03522	153.0	0	N/A	N/A
Pfam	UHGV-0416760_17	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0416760_17	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_18	phrog_38078	139.8	0	N/A	unknown function
UniRef90	UHGV-0416760_18	UniRef90_E7GTP4	572.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0416760_18	742740.HMPREF9474_04289	572.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0416760_18	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0416760_18	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0416760_18	PF13457,TIGR02594,NF033202,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0416760_19	K19118	242.6	0	csd2, cas7; CRISPR-associated protein Csd2	N/A
UniRef90	UHGV-0416760_19	UniRef90_E7GTP3	572.0	0	Csd2 family CRISPR-associated protein	N/A
eggNOG-mapper	UHGV-0416760_19	742740.HMPREF9474_04288	572.0	0	N/A	N/A
PADLOC	UHGV-0416760_19	cas_Csd2	262.1	0	CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	CRISPR-CAS
Pfam	UHGV-0416760_19	PF05107	N/A	N/A	CRISPR-associated protein Cas7	Cas_Cas7
NCBIFam	UHGV-0416760_19	TIGR02589.1	N/A	N/A	type I-C CRISPR-associated protein Cas7/Csd2	N/A
COG	UHGV-0416760_19	COG3649	N/A	N/A	CRISPR-Cas system type I effector complex subunit Cas7, RAMP superfamily	N/A
structural_annotation	UHGV-0416760_19	PF05107,TIGR02589,COG3649	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_20	phrog_25567	65.0	9.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0416760_20	411469.EUBHAL_00738	70.9	0.0000000000000389	N/A	N/A
AcrCatalog	UHGV-0416760_20	cluster_37554	215.0	0	NA	N/A
AcrCatalog	UHGV-0416760_21	cluster_29073	158.0	0	NA	N/A
KOfam	UHGV-0416760_23	K07727	55.6	0.0000000000000014	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0416760_23	UniRef90_G5FH61	151.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0416760_23	397288.C806_04335	103.0	1.43e-28	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0416760_23	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0416760_23	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0416760_23	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0416760_24	K14059	98.0	1.5e-28	int; integrase	N/A
PHROG	UHGV-0416760_24	phrog_1	104.9	9.1e-31	integrase	integration and excision
UniRef90	UHGV-0416760_24	UniRef90_UPI0019205CC8	845.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0416760_24	478749.BRYFOR_05407	427.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0416760_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0416760_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0416760_24	PF00589,MF_02055,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0416760_27	K18830	72.7	7.3e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0416760_27	phrog_4	55.0	0.000000000000002	transcriptional repressor	transcription regulation
UniRef90	UHGV-0416760_27	UniRef90_U2BBK0	270.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0416760_27	1235798.C817_05486	115.0	2.84e-31	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0416760_27	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0416760_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0416760_27	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_32	phrog_3306	164.9	0	N/A	unknown function
UniRef90	UHGV-0416760_32	UniRef90_UPI001A9B7451	160.0	0	N/A	N/A
eggNOG-mapper	UHGV-0416760_32	469616.FMAG_00734	133.0	5.18e-39	N/A	N/A
AcrCatalog	UHGV-0416760_32	cluster_5078	82.8	1.42e-23	NA	N/A
Pfam	UHGV-0416760_32	PF19670	N/A	N/A	N/A	DUF6173
structural_annotation	UHGV-0416760_32	PF19670	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0416760_33	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_37	phrog_30234	50.9	7.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0416760_37	33035.JPJF01000071_gene4461	86.3	5.34e-22	N/A	N/A
PHROG	UHGV-0416760_38	phrog_659	40.9	0.000000000011	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0416760_38	UniRef90_UPI00118460F7	449.0	0	N/A	N/A
eggNOG-mapper	UHGV-0416760_38	33035.JPJF01000135_gene5082	204.0	0	N/A	N/A
Pfam	UHGV-0416760_38	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0416760_38	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_39	phrog_434	55.2	0.0000000000000011	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0416760_39	1238184.CM001792_gene2549	62.4	0.00000000257	N/A	N/A
structural_annotation	UHGV-0416760_39	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_40	phrog_72	66.9	2.7e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0416760_40	411468.CLOSCI_00314	117.0	7.35e-31	N/A	N/A
structural_annotation	UHGV-0416760_40	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_41	phrog_7566	81.9	5.6e-24	N/A	unknown function
UniRef90	UHGV-0416760_41	UniRef90_A0A417GG52	171.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0416760_41	1304866.K413DRAFT_1198	60.1	0.000000000184	N/A	N/A
PHROG	UHGV-0416760_42	phrog_2113	62.9	3.8e-18	N/A	unknown function
structural_annotation	UHGV-0416760_42	PF01978,TIGR01610,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-0416760_43	phrog_2514	154.6	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0416760_43	UniRef90_S0A2V1	129.0	4.14e-32	DNA replication protein	N/A
eggNOG-mapper	UHGV-0416760_43	1304866.K413DRAFT_3019	144.0	8.98e-39	phage replisome	N/A
structural_annotation	UHGV-0416760_43	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A