UHGV-0419089 (vOTU-091883)

Viral Genome: UHGV-0419089

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0419089
vOTU ID	vOTU-091883
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4417
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9731
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	4.57
Jumbo phage	No

Genome content
Genome length (bp)	26,635
GC content	45.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	39
CDS density	92%
Average CDS length (bps)	630.46
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0419089_2	K01356	54.1	0.0000000000000036	lexA; repressor LexA [EC:3.4.21.88]	N/A
UniRef90	UHGV-0419089_2	UniRef90_A0A4P6M5S7	196.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0419089_2	638302.HMPREF0908_0103	61.6	0.00000000146	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0419089_2	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0419089_2	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
KOfam	UHGV-0419089_3	K02647	50.3	0.000000000000027	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-0419089_3	UniRef90_UPI000CF22719	126.0	1.1e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0419089_3	877424.ATWC01000048_gene915	49.7	0.00000522	PucR C-terminal helix-turn-helix domain	N/A
Pfam	UHGV-0419089_3	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-0419089_3	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-0419089_3	PF13556,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_4	phrog_424	85.5	5.6e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0419089_4	UniRef90_A0A2H4JC51	565.0	0	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	N/A
eggNOG-mapper	UHGV-0419089_4	411461.DORFOR_01142	571.0	0	N/A	N/A
COG	UHGV-0419089_4	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0419089_4	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_7	phrog_37916	164.5	0	N/A	unknown function
KOfam	UHGV-0419089_8	K07738	46.6	0.00000000000058	nrdR; transcriptional repressor NrdR	N/A
PHROG	UHGV-0419089_8	phrog_36879	40.4	0.000000000066	N/A	unknown function
UniRef90	UHGV-0419089_8	UniRef90_A0A4V0Z6U5	138.0	1.27995e-41	Transcriptional repressor NrdR	N/A
eggNOG-mapper	UHGV-0419089_8	1123013.AUIC01000003_gene416	47.8	0.00000843	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0419089_8	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
PHROG	UHGV-0419089_9	phrog_19011	157.4	0	N/A	unknown function
structural_annotation	UHGV-0419089_9	PF18359,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_10	phrog_36	55.3	0.0000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0419089_10	UniRef90_A0A7G5MXJ0	228.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0419089_10	33035.JPJF01000107_gene434	207.0	0	Sigma-70, region 4	N/A
Pfam	UHGV-0419089_10	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0419089_10	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0419089_11	1121289.JHVL01000078_gene560	100.0	3.69e-23	N/A	N/A
structural_annotation	UHGV-0419089_11	PF13601,NF040939	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_12	phrog_309	156.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0419089_12	UniRef90_UPI001D01B452	250.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0419089_12	33035.JPJF01000093_gene2259	159.0	0	transposase activity	N/A
Pfam	UHGV-0419089_12	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0419089_12	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0419089_13	phrog_30251	599.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0419089_13	UniRef90_UPI001D061099	875.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0419089_13	33035.JPJF01000093_gene2258	929.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0419089_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0419089_13	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0419089_13	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0419089_13	PF17289,PF03237,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_14	phrog_533	299.9	0	portal protein	head and packaging
UniRef90	UHGV-0419089_14	UniRef90_UPI001D06AB95	1064.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0419089_14	33035.JPJF01000093_gene2257	925.0	0	N/A	N/A
Pfam	UHGV-0419089_14	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0419089_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_15	phrog_581	253.3	0	minor head protein	head and packaging
UniRef90	UHGV-0419089_15	UniRef90_A0A8G1TMC4	577.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0419089_15	33035.JPJF01000093_gene2255	593.0	0	N/A	N/A
Pfam	UHGV-0419089_15	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0419089_15	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0419089_15	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_17	phrog_2303	163.6	0	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0419089_17	33035.JPJF01000093_gene2253	317.0	0	N/A	N/A
PHROG	UHGV-0419089_18	phrog_422	344.1	0	major head protein	head and packaging
UniRef90	UHGV-0419089_18	UniRef90_A0A3R6PT58	512.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0419089_18	33035.JPJF01000093_gene2252	523.0	0	N/A	N/A
structural_annotation	UHGV-0419089_18	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_19	phrog_1378	81.4	7.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0419089_19	742740.HMPREF9474_03506	91.7	5.1e-23	N/A	N/A
PHROG	UHGV-0419089_20	phrog_541	89.4	3.2e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0419089_20	33035.JPJF01000093_gene2250	251.0	0	N/A	N/A
PHROG	UHGV-0419089_21	phrog_8710	154.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0419089_21	33035.JPJF01000093_gene2249	227.0	0	N/A	N/A
structural_annotation	UHGV-0419089_21	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_22	phrog_556	53.6	0.0000000000000037	minor head protein	head and packaging
eggNOG-mapper	UHGV-0419089_22	33035.JPJF01000093_gene2248	201.0	0	N/A	N/A
PHROG	UHGV-0419089_23	phrog_2595	91.8	6e-27	head-tail connector protein	connector
UniRef90	UHGV-0419089_23	UniRef90_UPI001D0627B3	138.0	1.01e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-0419089_23	33035.JPJF01000093_gene2247	249.0	0	N/A	N/A
Pfam	UHGV-0419089_23	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0419089_23	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_24	phrog_820	110.7	8.7e-33	major tail protein	tail
eggNOG-mapper	UHGV-0419089_24	33035.JPJF01000093_gene2246	298.0	0	N/A	N/A
structural_annotation	UHGV-0419089_24	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_25	phrog_8300	111.9	2.9e-33	N/A	unknown function
eggNOG-mapper	UHGV-0419089_25	33035.JPJF01000093_gene2245	171.0	0	N/A	N/A
structural_annotation	UHGV-0419089_25	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_26	phrog_8355	105.8	1.3e-31	N/A	unknown function
UniRef90	UHGV-0419089_26	UniRef90_UPI00148B251E	137.0	1.4e-40	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0419089_26	33035.JPJF01000093_gene2244	142.0	1.58347e-43	N/A	N/A
PHROG	UHGV-0419089_27	phrog_3845	82.5	7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0419089_27	768710.DesyoDRAFT_5205	118.0	3.2e-32	PFAM Tellurite resistance protein TerB	N/A
Pfam	UHGV-0419089_27	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
COG	UHGV-0419089_27	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
structural_annotation	UHGV-0419089_27	PF13248	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_29	phrog_1535	395.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0419089_29	UniRef90_A0A2Y9BKW0	771.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0419089_29	33035.JPJF01000093_gene2243	1350.0	0	phage tail tape measure protein	N/A
COG	UHGV-0419089_29	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0419089_29	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_30	phrog_1194	80.9	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0419089_30	33035.JPJF01000093_gene2242	231.0	0	N/A	N/A
structural_annotation	UHGV-0419089_30	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_31	phrog_6616	731.0	0	tail protein	tail
UniRef90	UHGV-0419089_31	UniRef90_A0A7G5N1A9	437.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0419089_31	476272.RUMHYD_01992	459.0	0	N/A	N/A
structural_annotation	UHGV-0419089_31	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0419089_32	K21473	59.1	8.4e-17	ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]	N/A
PHROG	UHGV-0419089_32	phrog_11037	160.9	0	N/A	unknown function
UniRef90	UHGV-0419089_32	UniRef90_A0A4P6M1D5	669.0	0	Peptidoglycan endopeptidase RipA	N/A
eggNOG-mapper	UHGV-0419089_32	33035.JPJF01000023_gene3229	568.0	0	N/A	N/A
Pfam	UHGV-0419089_32	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0419089_32	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
structural_annotation	UHGV-0419089_32	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_33	phrog_5073	50.5	0.000000000000026	tail fiber protein	tail
eggNOG-mapper	UHGV-0419089_33	33035.JPJF01000093_gene2239	259.0	0	N/A	N/A
KOfam	UHGV-0419089_34	K24213	47.9	0.00000000000017	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0419089_34	phrog_5073	78.8	6e-23	tail fiber protein	tail
UniRef90	UHGV-0419089_34	UniRef90_UPI0018F61869	256.0	0	collagen-like protein	N/A
Pfam	UHGV-0419089_34	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0419089_35	K04763	229.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0419089_35	phrog_1	174.3	0	integrase	integration and excision
UniRef90	UHGV-0419089_35	UniRef90_UPI00148B170A	640.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0419089_35	33035.JPJF01000058_gene3673	369.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0419089_35	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0419089_35	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0419089_35	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0419089_35	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_37	phrog_12931	128.6	2.5e-38	N/A	unknown function
structural_annotation	UHGV-0419089_38	PF09693	N/A	N/A	N/A	N/A
PHROG	UHGV-0419089_39	phrog_16164	128.6	3e-38	N/A	unknown function
eggNOG-mapper	UHGV-0419089_39	33035.JPJF01000093_gene2236	280.0	0	N/A	N/A