UHGV-0438770 (vOTU-067177)

Viral Genome: UHGV-0438770

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0438770
vOTU ID	vOTU-067177
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_3165
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.98
Jumbo phage	No

Genome content
Genome length (bp)	35,184
GC content	44.95%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	93%
Average CDS length (bps)	670.22
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0438770_2	phrog_1583	82.5	2.4e-24	N/A	unknown function
UniRef90	UHGV-0438770_2	UniRef90_A0A373YB17	773.0	0	N/A	N/A
eggNOG-mapper	UHGV-0438770_2	1235793.C809_03895	487.0	0	N/A	N/A
Pfam	UHGV-0438770_2	PF03235	N/A	N/A	N/A	DUF262
COG	UHGV-0438770_2	COG1479	N/A	N/A	N/A	N/A
KOfam	UHGV-0438770_3	K01447	58.4	1.4e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0438770_3	phrog_7698	164.5	0	endolysin	lysis
UniRef90	UHGV-0438770_3	UniRef90_A0A5R9MKH3	518.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0438770_3	877411.JMMA01000002_gene2384	192.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0438770_3	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0438770_3	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0438770_3	PF01510,PF18342,MF_04111,NF008758,COG3023,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_4	phrog_199	84.6	1.1e-24	holin	lysis
UniRef90	UHGV-0438770_4	UniRef90_A0A5R9MH90	267.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0438770_4	887325.HMPREF0381_0407	172.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0438770_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0438770_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0438770_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0438770_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_8	phrog_6616	50.1	2e-26	tail protein	tail
eggNOG-mapper	UHGV-0438770_8	1160721.RBI_II00526	707.0	0	N/A	N/A
structural_annotation	UHGV-0438770_8	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_9	phrog_1194	48.8	0.00000000000011	N/A	unknown function
eggNOG-mapper	UHGV-0438770_9	1160721.RBI_II00527	102.0	2.13e-26	N/A	N/A
structural_annotation	UHGV-0438770_9	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_10	phrog_6900	265.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0438770_10	768726.HMPREF9178_1054	312.0	0	phage tail tape measure protein	N/A
COG	UHGV-0438770_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0438770_10	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_11	phrog_1633	137.4	4.80001e-41	N/A	unknown function
UniRef90	UHGV-0438770_11	UniRef90_A0A139QHL2	123.0	4.71e-34	N/A	N/A
eggNOG-mapper	UHGV-0438770_11	873448.STRPO_0293	110.0	7.41e-30	N/A	N/A
Pfam	UHGV-0438770_11	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0438770_11	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_12	phrog_1526	84.9	6.3e-25	N/A	unknown function
UniRef90	UHGV-0438770_12	UniRef90_G2SN49	65.1	0.0000000000068	N/A	N/A
eggNOG-mapper	UHGV-0438770_12	665950.HMPREF1025_02524	80.9	7.45e-19	N/A	N/A
PHROG	UHGV-0438770_13	phrog_117	163.2	0	major tail protein	tail
UniRef90	UHGV-0438770_13	UniRef90_A0A373V4D0	367.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0438770_13	1121864.OMO_02158	191.0	0	domain, Protein	N/A
COG	UHGV-0438770_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0438770_13	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_14	phrog_123	65.7	7.3e-19	tail terminator	connector
UniRef90	UHGV-0438770_14	UniRef90_A0A2A5RIK6	120.0	3.07e-33	N/A	N/A
eggNOG-mapper	UHGV-0438770_14	1123263.AUKY01000068_gene495	127.0	1.34e-36	N/A	N/A
structural_annotation	UHGV-0438770_14	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_15	phrog_387	59.5	5.1e-17	neck protein	connector
eggNOG-mapper	UHGV-0438770_15	1423775.BAMN01000011_gene600	61.6	0.0000000000138	N/A	N/A
PHROG	UHGV-0438770_16	phrog_501	77.9	1.1e-22	head closure Hc1	connector
UniRef90	UHGV-0438770_16	UniRef90_R6CEU4	152.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0438770_16	43685.Q38120_BPR1T	137.0	2.19001e-40	N/A	N/A
structural_annotation	UHGV-0438770_16	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_17	phrog_137	53.3	0.0000000000000037	head-tail adaptor Ad1	connector
UniRef90	UHGV-0438770_17	UniRef90_R6C7E8	160.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-0438770_17	873448.STRPO_0287	87.8	3.25e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-0438770_17	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-0438770_17	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_18	phrog_32396	126.1	1e-37	N/A	unknown function
UniRef90	UHGV-0438770_18	UniRef90_A0A373V3S9	556.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0438770_18	936375.HMPREF1152_0679	328.0	0	Phage capsid family	N/A
Pfam	UHGV-0438770_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0438770_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0438770_18	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_19	phrog_233	65.3	1.7e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0438770_19	UniRef90_A0A7Z2B590	76.6	0.00000000000000573	N/A	N/A
eggNOG-mapper	UHGV-0438770_19	1280698.AUJS01000007_gene1037	66.6	0.00000000000728	N/A	N/A
Pfam	UHGV-0438770_19	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0438770_19	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_20	phrog_17688	300.8	0	N/A	unknown function
UniRef90	UHGV-0438770_20	UniRef90_A0A373V412	843.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0438770_20	665950.HMPREF1025_02532	512.0	0	phage terminase, large subunit	N/A
COG	UHGV-0438770_20	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0438770_20	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_21	phrog_872	92.9	3.6e-27	N/A	unknown function
UniRef90	UHGV-0438770_21	UniRef90_A0A373V416	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0438770_21	1226322.HMPREF1545_00781	131.0	4.41e-37	N/A	N/A
Pfam	UHGV-0438770_21	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0438770_21	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0438770_21	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0438770_22	936596.HMPREF1495_2378	81.6	1.34e-19	N/A	N/A
PHROG	UHGV-0438770_23	phrog_2494	167.0	0	minor head protein	head and packaging
UniRef90	UHGV-0438770_23	UniRef90_UPI001F3BD4CE	135.0	1.35e-32	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-0438770_23	1214184.ALKY01000039_gene923	132.0	4.68e-32	N/A	N/A
PHROG	UHGV-0438770_24	phrog_104	248.2	0	portal protein	head and packaging
UniRef90	UHGV-0438770_24	UniRef90_A0A373V3S0	799.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0438770_24	1280698.AUJS01000007_gene1033	494.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-0438770_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_25	phrog_36	45.3	0.00000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0438770_25	UniRef90_A0A374HLM1	248.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0438770_25	1121335.Clst_0383	51.6	0.00000193	N/A	N/A
structural_annotation	UHGV-0438770_25	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_26	phrog_986	83.9	1.2e-24	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0438770_26	UniRef90_UPI00189DC125	333.0	0	N/A	N/A
eggNOG-mapper	UHGV-0438770_26	2754.EH55_06950	67.0	0.00000000000263	N/A	N/A
Pfam	UHGV-0438770_26	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0438770_27	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_28	phrog_140	86.8	2.8e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0438770_28	UniRef90_A0A373Y8T3	256.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0438770_28	411462.DORLON_00806	194.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0438770_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0438770_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0438770_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0438770_30	K07505	436.2	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0438770_30	phrog_2597	1199.9	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0438770_30	UniRef90_A0A1C6E992	1498.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0438770_30	394503.Ccel_3304	1027.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0438770_30	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0438770_30	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0438770_30	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0438770_30	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0438770_31	K17677	348.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0438770_31	phrog_16	283.3	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0438770_31	UniRef90_A0A1C6E943	1043.0	0	Type-1 restriction enzyme R protein	N/A
eggNOG-mapper	UHGV-0438770_31	1235792.C808_05388	815.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0438770_31	mREase_IV_00005	121.6	7.5e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0438770_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0438770_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0438770_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0438770_31	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_32	phrog_2698	195.2	0	N/A	unknown function
UniRef90	UHGV-0438770_32	UniRef90_UPI001D0882DA	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-0438770_32	742723.HMPREF9477_00927	162.0	0	N/A	N/A
structural_annotation	UHGV-0438770_32	PF17426,NF005674	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_33	phrog_124	242.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0438770_33	UniRef90_UPI000F52E538	483.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0438770_33	1235792.C808_05390	429.0	0	AAA domain	N/A
Pfam	UHGV-0438770_33	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0438770_33	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0438770_34	K03546	60.0	2.9e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0438770_34	phrog_1499	473.3	0	N/A	unknown function
UniRef90	UHGV-0438770_34	UniRef90_A0A1C6E8X2	758.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0438770_34	641112.ACOK01000073_gene2873	518.0	0	domain protein	N/A
Pfam	UHGV-0438770_34	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0438770_34	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0438770_34	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0438770_38	PF11372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0438770_39	PF16857,MF_00273,NF001981	N/A	N/A	N/A	N/A
KOfam	UHGV-0438770_42	K07741	143.8	2.49992e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-0438770_42	phrog_130	284.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0438770_42	UniRef90_A0A7G5MXK6	343.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0438770_42	887325.HMPREF0381_0355	343.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0438770_42	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0438770_42	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0438770_42	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0438770_42	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0438770_43	UniRef90_A0A5R9MJ58	119.0	1.32e-33	Helix-turn-helix transcriptional regulator (Fragment)	N/A
Pfam	UHGV-0438770_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0438770_44	phrog_8	52.7	0.00000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-0438770_44	UniRef90_A0A6N3I0F5	81.6	5.55e-18	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-0438770_44	742733.HMPREF9469_01855	67.4	0.00000000000037	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0438770_44	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0438770_44	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0438770_44	PF01381,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0438770_45	phrog_87	51.2	0.0000000000000096	metallo-protease	other
UniRef90	UHGV-0438770_45	UniRef90_A0A3D1HDV6	164.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0438770_45	428125.CLOLEP_01867	128.0	1.18e-33	N/A	N/A
Pfam	UHGV-0438770_45	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
UniRef90	UHGV-0438770_46	UniRef90_UPI001C126F91	58.9	0.000000428	copper amine oxidase N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0438770_46	445972.ANACOL_01856	110.0	1.17e-26	N/A	N/A
KOfam	UHGV-0438770_47	K14059	249.2	0	int; integrase	N/A
PHROG	UHGV-0438770_47	phrog_1	214.7	0	integrase	integration and excision
UniRef90	UHGV-0438770_47	UniRef90_A0A1C6FGR9	744.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0438770_47	1408823.AXUS01000024_gene2685	174.0	0	Arm DNA-binding domain	N/A
Pfam	UHGV-0438770_47	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0438770_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0438770_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0438770_47	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0438770_48	1160721.RBI_II00383	387.0	0	N/A	N/A
KOfam	UHGV-0438770_49	K00666	503.1	0	K00666; fatty-acyl-CoA synthase [EC:6.2.1.-]	N/A
PHROG	UHGV-0438770_49	phrog_36676	167.0	0	N/A	unknown function
UniRef90	UHGV-0438770_49	UniRef90_A0A1C6GJ55	1079.0	0	Short-chain-fatty-acid--CoA ligase	N/A
eggNOG-mapper	UHGV-0438770_49	1160721.RBI_II00382	1080.0	0	AMP-binding enzyme	N/A
Pfam	UHGV-0438770_49	PF00501	N/A	N/A	AMP-binding enzyme	AMP-binding
Pfam	UHGV-0438770_49	PF13193	N/A	N/A	AMP-binding enzyme C-terminal domain	AMP-binding_C
COG	UHGV-0438770_49	COG0318	N/A	N/A	O-succinylbenzoic acid-CoA ligase MenE or related acyl-CoA synthetase (AMP-forming)	N/A