UHGV-0440478 (vOTU-161999)

Viral Genome: UHGV-0440478

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0440478
vOTU ID	vOTU-161999
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS743389\|NODE_26_length_22203_cov_8.691349
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.42 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9796
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.87
Jumbo phage	No

Genome content
Genome length (bp)	22,203
GC content	42.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	90%
Average CDS length (bps)	667.90
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0440478_1	phrog_8	45.3	0.0000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0440478_1	UniRef90_U2R3K7	65.1	0.0000000000305	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0440478_1	1226322.HMPREF1545_00148	65.1	0.00000000000512	Transcriptional	N/A
Pfam	UHGV-0440478_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0440478_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0440478_1	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0440478_3	K22300	42.6	0.000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
eggNOG-mapper	UHGV-0440478_3	1140002.I570_00281	52.4	0.00000123	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0440478_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0440478_3	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-0440478_4	phrog_7115	128.8	2.2e-38	N/A	unknown function
UniRef90	UHGV-0440478_4	UniRef90_V6T0G9	171.0	0	bPH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0440478_4	1294265.JCM21738_2387	171.0	0	Bacterial PH domain	N/A
Pfam	UHGV-0440478_4	PF08000	N/A	N/A	Bacterial PH domain	bPH_1
structural_annotation	UHGV-0440478_4	PF08000,MF_00437	N/A	N/A	N/A	N/A
KOfam	UHGV-0440478_5	K14059	223.1	0	int; integrase	N/A
PHROG	UHGV-0440478_5	phrog_1	199.9	0	integrase	integration and excision
UniRef90	UHGV-0440478_5	UniRef90_A0A847CB94	264.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0440478_5	1238184.CM001792_gene2557	145.0	3.13e-37	Arm DNA-binding domain	N/A
Pfam	UHGV-0440478_5	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0440478_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0440478_5	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0440478_5	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0440478_7	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_8	phrog_20016	192.9	0	N/A	unknown function
UniRef90	UHGV-0440478_8	UniRef90_A0A345BPX4	171.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0440478_8	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-0440478_8	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_9	phrog_16490	83.7	5.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0440478_9	1408437.JNJN01000043_gene803	113.0	5.74e-28	N/A	N/A
PHROG	UHGV-0440478_13	phrog_1863	51.3	0.000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0440478_13	66692.ABC2817	60.5	0.0000000000974	N/A	N/A
KOfam	UHGV-0440478_14	K07273	86.3	4.4e-25	acm; lysozyme	N/A
PHROG	UHGV-0440478_14	phrog_291	72.3	8.9e-21	endolysin	lysis
UniRef90	UHGV-0440478_14	UniRef90_A0A6B9SS82	81.6	0.0000000000000602	Lysozyme	N/A
Pfam	UHGV-0440478_14	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0440478_14	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0440478_16	phrog_9534	160.4	0	head protein	head and packaging
eggNOG-mapper	UHGV-0440478_16	665956.HMPREF1032_02939	108.0	8.58e-26	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0440478_17	phrog_538	165.4	0	minor tail protein	tail
UniRef90	UHGV-0440478_17	UniRef90_UPI001C0F168D	95.9	1.01e-17	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0440478_17	411473.RUMCAL_03180	67.0	0.00000000487	N/A	N/A
Pfam	UHGV-0440478_17	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
PHROG	UHGV-0440478_18	phrog_33	70.6	3.5e-20	distal tail protein Dit	tail
UniRef90	UHGV-0440478_18	UniRef90_A0A564T4N7	134.0	3.31e-34	Phage tail protein	N/A
eggNOG-mapper	UHGV-0440478_18	755731.Clo1100_0556	90.1	3.12e-18	Phage tail protein	N/A
Pfam	UHGV-0440478_18	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0440478_18	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0440478_18	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_19	phrog_6900	151.3	8.40779e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0440478_19	1111121.HMPREF1247_0787	231.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0440478_19	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0440478_19	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_21	phrog_885	95.8	4.1e-28	major tail protein	tail
UniRef90	UHGV-0440478_21	UniRef90_A0A843J9F0	208.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0440478_21	1504822.CCNO01000012_gene492	225.0	0	N/A	N/A
structural_annotation	UHGV-0440478_21	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_22	phrog_17405	58.6	8.8e-17	head protein	head and packaging
structural_annotation	UHGV-0440478_22	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_23	phrog_17977	77.1	1.7e-22	N/A	unknown function
UniRef90	UHGV-0440478_23	UniRef90_UPI00141211AB	122.0	6.18e-34	head-tail adaptor protein	N/A
Pfam	UHGV-0440478_23	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0440478_23	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_25	phrog_544	117.7	1e-34	major head protein	head and packaging
UniRef90	UHGV-0440478_25	UniRef90_A0A1C6B5R0	325.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0440478_25	476272.RUMHYD_01776	296.0	0	N/A	N/A
structural_annotation	UHGV-0440478_25	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_26	phrog_194	42.8	0.0000000000094	head scaffolding protein	head and packaging
UniRef90	UHGV-0440478_26	UniRef90_A0A6B9SU02	108.0	3.63e-26	Fibronectin autolysin	N/A
structural_annotation	UHGV-0440478_26	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_27	phrog_5	49.1	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0440478_27	UniRef90_A0A6H1MR47	84.3	6.51e-18	Putative tail component	N/A
Pfam	UHGV-0440478_27	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0440478_27	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_28	phrog_595	113.7	2.5e-33	head maturation protease	head and packaging
UniRef90	UHGV-0440478_28	UniRef90_A0A3D2MUF2	177.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0440478_28	1111135.HMPREF1248_0663	155.0	3.07001e-40	cell adhesion	N/A
Pfam	UHGV-0440478_28	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0440478_28	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0440478_28	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_29	phrog_64	151.8	2.8026e-45	portal protein	head and packaging
UniRef90	UHGV-0440478_29	UniRef90_UPI0018A8A301	433.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0440478_29	673376.F2VHW1_9CAUD	221.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0440478_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0440478_29	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0440478_30	phrog_38	142.1	3.99931e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0440478_30	UniRef90_UPI001F26B075	383.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0440478_30	1140001.I571_01829	394.0	0	N/A	N/A
structural_annotation	UHGV-0440478_30	PF17289,PF05876,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A