UHGV-0452669 (vOTU-159325)

Viral Genome: UHGV-0452669

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0452669
vOTU ID	vOTU-159325
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS698784\|NODE_21_length_20696_cov_8.809118
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.67 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9768
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.74
Jumbo phage	No

Genome content
Genome length (bp)	20,696
GC content	58.06%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	87%
Average CDS length (bps)	420.42
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 51.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0452669_1	K06909	61.0	2.1e-17	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0452669_1	phrog_979	89.1	4e-26	terminase large subunit	head and packaging
UniRef90	UHGV-0452669_1	UniRef90_A0A2N2A3M2	149.0	2.8096e-42	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0452669_1	665956.HMPREF1032_03884	171.0	0	Terminase-like family	N/A
Pfam	UHGV-0452669_1	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0452669_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0452669_1	PF04466,MF_00661,NF002340,COG1702	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_2	phrog_606	68.9	7.9e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0452669_2	UniRef90_UPI001F487344	128.0	2.41e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0452669_2	397290.C810_05185	129.0	7e-36	DNA-packaging protein gp3	N/A
Pfam	UHGV-0452669_2	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0452669_2	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_3	phrog_3584	114.2	9.9e-34	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0452669_3	537013.CLOSTMETH_02141	66.2	0.000000000167	N/A	N/A
structural_annotation	UHGV-0452669_3	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_4	phrog_2245	86.6	2.6e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0452669_4	UniRef90_A0A4U9RLZ8	62.8	0.000000000647	N/A	N/A
eggNOG-mapper	UHGV-0452669_4	428125.CLOLEP_01814	59.7	0.00000000454	COG NOG14118 non supervised orthologous group	N/A
PHROG	UHGV-0452669_6	phrog_374	54.8	0.0000000000000019	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0452669_6	1423807.BACO01000037_gene1103	68.2	0.00000000000166	N/A	N/A
PHROG	UHGV-0452669_8	phrog_190	102.7	3.3e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0452669_8	UniRef90_UPI0019576AE6	130.0	3.79e-36	N/A	N/A
eggNOG-mapper	UHGV-0452669_8	1226322.HMPREF1545_00295	117.0	2.86e-31	N/A	N/A
Pfam	UHGV-0452669_8	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0452669_8	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_9	phrog_22543	40.5	0.000000000042	N/A	unknown function
Pfam	UHGV-0452669_11	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-0452669_11	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_12	phrog_38832	65.1	9.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0452669_12	665956.HMPREF1032_00143	72.0	0.00000000000016	N/A	N/A
PHROG	UHGV-0452669_13	phrog_3136	130.2	7.8e-39	N/A	unknown function
UniRef90	UHGV-0452669_13	UniRef90_UPI001C26B029	128.0	9.32e-34	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0452669_13	394503.Ccel_3165	57.0	0.0000000491	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0452669_13	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0452669_13	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_14	phrog_424	98.2	9.3e-29	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0452669_14	UniRef90_A0A1Q6JI14	357.0	0	Phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0452669_14	1410628.JNKS01000054_gene544	303.0	0	N/A	N/A
Pfam	UHGV-0452669_14	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0452669_14	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0452669_14	PF01507,MF_01161,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_16	phrog_111	170.1	0	DNA methyltransferase	other
UniRef90	UHGV-0452669_16	UniRef90_A0A1Y4EVK6	234.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0452669_16	1121121.KB894312_gene3179	202.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0452669_16	oMTase_00015	194.7	0	orphan methyltransferase	RM
Pfam	UHGV-0452669_16	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0452669_16	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0452669_19	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0452669_20	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0452669_22	PF10548	N/A	N/A	N/A	N/A
KOfam	UHGV-0452669_27	K18830	56.6	6.8e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0452669_27	phrog_8	46.9	0.00000000000057	transcriptional regulator	transcription regulation
UniRef90	UHGV-0452669_27	UniRef90_A0A350VVA2	94.7	1.09e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0452669_27	1280698.AUJS01000007_gene1002	65.5	0.0000000000119	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0452669_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0452669_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0452669_27	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
COG	UHGV-0452669_29	COG2374	N/A	N/A	Predicted extracellular nuclease	N/A
Pfam	UHGV-0452669_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0452669_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0452669_31	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0452669_32	K06400	245.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0452669_32	phrog_95	263.0	0	integrase	integration and excision
UniRef90	UHGV-0452669_32	UniRef90_G9YSD9	417.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0452669_32	1408437.JNJN01000002_gene1420	403.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0452669_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0452669_32	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0452669_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0452669_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0452669_32	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0452669_33	UniRef90_A0A7M1RTM1	76.6	0.0000000000000241	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0452669_33	1378168.N510_03079	66.6	0.000000000056	N/A	N/A
KOfam	UHGV-0452669_38	K01447	108.4	9.4e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0452669_38	phrog_1794	104.8	1.1e-30	amidase	lysis
UniRef90	UHGV-0452669_38	UniRef90_N1ZHY5	132.0	3.04e-34	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0452669_38	97138.C820_00251	132.0	5.11e-35	Ami_2	N/A
Pfam	UHGV-0452669_38	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0452669_38	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0452669_38	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_39	phrog_443	56.8	6.8e-16	holin	lysis
UniRef90	UHGV-0452669_39	UniRef90_A0A4R1QPE5	91.7	4.38e-23	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0452669_39	1469948.JPNB01000002_gene3855	91.7	7.34e-24	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0452669_39	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0452669_39	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0452669_40	phrog_937	47.0	0.00000000000038	hemolysin	other
eggNOG-mapper	UHGV-0452669_40	1519439.JPJG01000023_gene533	49.3	0.00000265	N/A	N/A
PHROG	UHGV-0452669_41	phrog_37900	56.7	4e-18	N/A	unknown function
UniRef90	UHGV-0452669_41	UniRef90_R5IRZ6	269.0	0	N/A	N/A
eggNOG-mapper	UHGV-0452669_41	1519439.JPJG01000060_gene1894	179.0	0	N/A	N/A
Pfam	UHGV-0452669_41	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0452669_41	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0452669_41	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0452669_42	K06236	154.5	0	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0452669_42	phrog_819	140.9	0	tail protein	tail
eggNOG-mapper	UHGV-0452669_42	1519439.JPJG01000060_gene1892	85.1	0.0000000000000158	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0452669_42	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0452669_42	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A