UHGV-0455960 (vOTU-104338)

Viral Genome: UHGV-0455960

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0455960
vOTU ID	vOTU-104338
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4230
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.57 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9795
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.85
Jumbo phage	No

Genome content
Genome length (bp)	28,034
GC content	47.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	89%
Average CDS length (bps)	582.14
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.57)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0455960_1	phrog_5070	131.3	4.8e-39	N/A	unknown function
UniRef90	UHGV-0455960_1	UniRef90_A0A412PKE0	73.2	0.00000000000000433	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0455960_1	768710.DesyoDRAFT_1067	96.3	7.68e-24	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0455960_1	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0455960_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
KOfam	UHGV-0455960_7	K07729	46.3	0.00000000000086	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0455960_7	phrog_8	40.8	0.000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0455960_7	UniRef90_A0A3E2UD82	104.0	7.38e-28	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0455960_7	997346.HMPREF9374_3915	82.8	5e-20	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0455960_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0455960_8	K22299	59.7	6.7e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0455960_8	phrog_8	73.5	4.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0455960_8	UniRef90_A0A3R6A5Q0	150.0	2.8026e-45	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0455960_8	742733.HMPREF9469_01471	126.0	3.24e-36	sequence-specific DNA binding	N/A
PADLOC	UHGV-0455960_8	retron_type_VI_hth_cluster2_1	51.5	0.000000000000026	N/A	Retron
Pfam	UHGV-0455960_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0455960_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0455960_8	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_9	phrog_1914	78.5	4e-23	N/A	unknown function
UniRef90	UHGV-0455960_9	UniRef90_UPI00068F15FE	510.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0455960_9	411468.CLOSCI_02400	264.0	0	N/A	N/A
Pfam	UHGV-0455960_9	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0455960_9	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0455960_9	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_10	phrog_3989	288.8	0	N/A	unknown function
UniRef90	UHGV-0455960_10	UniRef90_A0A829NXH1	457.0	0	BRCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0455960_10	755731.Clo1100_2167	282.0	0	twin BRCT domain	N/A
Pfam	UHGV-0455960_10	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0455960_10	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0455960_10	PF00533,NF004844	N/A	N/A	N/A	N/A
KOfam	UHGV-0455960_11	K06400	357.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0455960_11	phrog_95	370.6	0	integrase	integration and excision
UniRef90	UHGV-0455960_11	UniRef90_A6BEV3	725.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0455960_11	411462.DORLON_00823	725.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0455960_11	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0455960_11	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0455960_11	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0455960_11	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0455960_11	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0455960_12	1280698.AUJS01000007_gene1050	82.0	2.96e-17	N/A	N/A
KOfam	UHGV-0455960_13	K07273	193.2	0	acm; lysozyme	N/A
PHROG	UHGV-0455960_13	phrog_291	211.3	0	endolysin	lysis
UniRef90	UHGV-0455960_13	UniRef90_UPI000414A751	362.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0455960_13	1123263.AUKY01000015_gene1625	362.0	0	lyzozyme M1	N/A
Pfam	UHGV-0455960_13	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0455960_13	PF01476	N/A	N/A	LysM domain	LysM
NCBIFam	UHGV-0455960_13	TIGR02899.1	N/A	N/A	SafA/ExsA family spore coat assembly protein	N/A
COG	UHGV-0455960_13	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0455960_13	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_14	phrog_199	61.7	8.3e-18	holin	lysis
UniRef90	UHGV-0455960_14	UniRef90_UPI0019577168	268.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0455960_14	411460.RUMTOR_02100	261.0	0	N/A	N/A
Pfam	UHGV-0455960_14	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0455960_14	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0455960_14	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0455960_15	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0455960_16	537007.BLAHAN_05250	107.0	2.21e-28	N/A	N/A
KOfam	UHGV-0455960_17	K19721	48.5	0.000000000000033	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0455960_17	phrog_5073	74.7	1.3e-21	tail fiber protein	tail
UniRef90	UHGV-0455960_17	UniRef90_A0A174CKQ2	63.9	0.000000022	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0455960_17	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0455960_17	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0455960_18	K16628	88.5	2.5e-26	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0455960_18	phrog_6320	94.7	6.9e-31	tail fiber protein	tail
eggNOG-mapper	UHGV-0455960_18	641107.CDLVIII_1355	87.4	2.43e-18	N/A	N/A
Pfam	UHGV-0455960_18	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0455960_19	phrog_16164	80.8	8.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0455960_19	33035.JPJF01000093_gene2236	179.0	0	N/A	N/A
structural_annotation	UHGV-0455960_19	PF10651,NF032891	N/A	N/A	N/A	N/A
UniRef90	UHGV-0455960_20	UniRef90_A0A374E9Q0	234.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0455960_20	1235798.C817_04596	148.0	8.97e-39	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0455960_20	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0455960_20	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_21	phrog_11037	139.2	2.59997e-41	N/A	unknown function
UniRef90	UHGV-0455960_21	UniRef90_A0A373N7H3	500.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0455960_21	33035.JPJF01000093_gene2240	322.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0455960_21	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0455960_21	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0455960_21	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0455960_21	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_22	phrog_13289	439.6	0	tail protein	tail
UniRef90	UHGV-0455960_22	UniRef90_UPI001570BE36	804.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0455960_22	1235798.C817_02568	501.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0455960_22	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0455960_22	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0455960_22	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0455960_22	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_23	phrog_33	69.2	9.9e-20	distal tail protein Dit	tail
UniRef90	UHGV-0455960_23	UniRef90_UPI000E50043B	284.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0455960_23	1235798.C817_02569	234.0	0	tail component	N/A
NCBIFam	UHGV-0455960_23	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0455960_23	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0455960_23	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_24	phrog_23464	233.8	0	N/A	unknown function
UniRef90	UHGV-0455960_24	UniRef90_A0A373N7M8	232.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0455960_24	1232452.BAIB02000007_gene1616	649.0	0	phage tail tape measure protein	N/A
COG	UHGV-0455960_24	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0455960_26	phrog_88	82.6	4.8e-24	major tail protein	tail
UniRef90	UHGV-0455960_26	UniRef90_A0A3E3JYD8	253.0	0	Phage tail protein	N/A
Pfam	UHGV-0455960_26	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0455960_26	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0455960_26	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_27	phrog_5	45.8	0.0000000000013	tail completion or Neck1 protein	connector
UniRef90	UHGV-0455960_27	UniRef90_D4M595	122.0	1.02e-33	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0455960_27	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0455960_28	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0455960_29	UniRef90_UPI00189B1559	117.0	8.05e-32	phage head closure protein	N/A
structural_annotation	UHGV-0455960_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0455960_31	476272.RUMHYD_02855	106.0	4.48e-29	N/A	N/A
PHROG	UHGV-0455960_32	phrog_10	84.6	1.3e-24	major head protein	head and packaging
UniRef90	UHGV-0455960_32	UniRef90_A0A3E3JY53	595.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0455960_32	1232452.BAIB02000007_gene1625	596.0	0	Phage capsid family	N/A
Pfam	UHGV-0455960_32	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0455960_32	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0455960_32	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0455960_32	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0455960_33	K01358	153.6	1.4013e-45	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0455960_33	phrog_94	225.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0455960_33	UniRef90_A0A3E3JYT5	285.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0455960_33	1232452.BAIB02000007_gene1626	285.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0455960_33	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0455960_33	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0455960_33	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_34	phrog_12	80.6	1.4e-23	portal protein	head and packaging
UniRef90	UHGV-0455960_34	UniRef90_A0A3E3JY21	534.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0455960_34	1232452.BAIB02000007_gene1627	501.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0455960_34	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0455960_34	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0455960_34	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_35	phrog_9	261.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0455960_35	UniRef90_A0A3E3JY25	955.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0455960_35	1232452.BAIB02000007_gene1629	644.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0455960_35	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0455960_35	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0455960_35	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0455960_35	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_36	phrog_5110	93.9	1.1e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0455960_36	UniRef90_A0A1C5LZF0	114.0	1.76e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0455960_36	349161.Dred_2608	73.9	8.44e-16	N/A	N/A
Pfam	UHGV-0455960_36	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0455960_36	PF05119,TIGR01558	N/A	N/A	N/A	N/A
KOfam	UHGV-0455960_37	K07451	46.6	0.0000000000006	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0455960_37	phrog_119	82.1	7.4e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0455960_37	UniRef90_UPI00156F1D4A	174.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0455960_37	1232452.BAIB02000007_gene1631	95.9	3.45e-24	HNH nucleases	N/A
Pfam	UHGV-0455960_37	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0455960_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0455960_38	UniRef90_A0A1Y4H070	112.0	2.32e-31	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0455960_38	1304866.K413DRAFT_0813	73.9	6.53e-17	N/A	N/A
structural_annotation	UHGV-0455960_38	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0455960_40	phrog_36	67.5	2.4e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0455960_40	UniRef90_R6WB78	157.0	0	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0455960_40	411462.DORLON_00800	125.0	4.23e-35	N/A	N/A
Pfam	UHGV-0455960_40	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0455960_40	PF04545,MF_00245,NF001068,COG2739	N/A	N/A	N/A	N/A