UHGV-0456656 (vOTU-024423)

Viral Genome: UHGV-0456656

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0456656
vOTU ID	vOTU-024423
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS698751\|NODE_16_length_23969_cov_13.579451
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.29 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9768
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.79
Jumbo phage	No

Genome content
Genome length (bp)	23,969
GC content	51.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	33
CDS density	91%
Average CDS length (bps)	659.18
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0456656_1	phrog_9	292.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0456656_1	UniRef90_A0A0D8IV16	1054.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0456656_1	1226322.HMPREF1545_00113	927.0	0	Phage Terminase	N/A
Pfam	UHGV-0456656_1	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0456656_1	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0456656_1	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0456656_1	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_2	phrog_12	182.1	0	portal protein	head and packaging
UniRef90	UHGV-0456656_2	UniRef90_A0A0D8IVL0	541.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0456656_2	1226322.HMPREF1545_00114	475.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0456656_2	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0456656_2	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0456656_2	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0456656_2	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0456656_3	K06904	149.6	2.52234e-44	N/A	N/A
PHROG	UHGV-0456656_3	phrog_80	170.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0456656_3	UniRef90_U2SBX0	294.0	0	Phage prohead protease, HK97 family	N/A
eggNOG-mapper	UHGV-0456656_3	1226322.HMPREF1545_00115	294.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0456656_3	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0456656_3	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0456656_3	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0456656_3	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_4	phrog_10	203.4	0	major head protein	head and packaging
UniRef90	UHGV-0456656_4	UniRef90_UPI000679B959	704.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0456656_4	1226322.HMPREF1545_00116	613.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0456656_4	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0456656_4	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0456656_4	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0456656_4	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0456656_4	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_5	phrog_2550	75.1	5.1e-22	N/A	unknown function
UniRef90	UHGV-0456656_5	UniRef90_R5V091	90.5	7.4e-22	Phage related protein	N/A
eggNOG-mapper	UHGV-0456656_5	1226322.HMPREF1545_00117	100.0	1.95e-26	N/A	N/A
structural_annotation	UHGV-0456656_5	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_6	phrog_19734	92.4	4.8e-27	N/A	unknown function
UniRef90	UHGV-0456656_6	UniRef90_A0A3R6AW46	102.0	7.59e-26	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0456656_6	1235798.C817_04587	98.6	3.84e-25	N/A	N/A
structural_annotation	UHGV-0456656_6	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0456656_7	1232446.BAIE02000002_gene829	72.4	7.25e-16	N/A	N/A
PHROG	UHGV-0456656_8	phrog_5	50.1	0.000000000000064	tail completion or Neck1 protein	connector
UniRef90	UHGV-0456656_8	UniRef90_A0A1C6FG30	154.0	5.60519e-45	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0456656_8	908340.HMPREF9406_2573	129.0	5.46e-36	N/A	N/A
structural_annotation	UHGV-0456656_8	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_9	phrog_88	87.0	2e-25	major tail protein	tail
UniRef90	UHGV-0456656_9	UniRef90_UPI0018771F27	144.0	5.76e-40	phage tail protein	N/A
eggNOG-mapper	UHGV-0456656_9	1195236.CTER_5106	70.1	0.00000000000317	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0456656_9	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0456656_9	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0456656_9	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_11	phrog_8462	172.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0456656_11	UniRef90_A0A7X6UMX1	229.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0456656_11	509191.AEDB02000020_gene3249	237.0	0	tail tape measure protein, TP901	N/A
COG	UHGV-0456656_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0456656_11	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_12	phrog_33	77.7	2.6e-22	distal tail protein Dit	tail
UniRef90	UHGV-0456656_12	UniRef90_A0A173Z1X4	208.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0456656_12	1160721.RBI_I01575	150.0	2.44947e-42	Phage tail protein	N/A
COG	UHGV-0456656_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0456656_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_13	phrog_1067	384.6	0	minor head protein	head and packaging
UniRef90	UHGV-0456656_13	UniRef90_A0A1C6H6B4	617.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0456656_13	1160721.RBI_I01574	410.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0456656_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0456656_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0456656_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0456656_13	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_14	phrog_19280	53.7	0.0000000000000026	N/A	unknown function
eggNOG-mapper	UHGV-0456656_14	931276.Cspa_c07580	58.9	0.00000357	nuclear chromosome segregation	N/A
Pfam	UHGV-0456656_14	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
COG	UHGV-0456656_14	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0456656_14	PF10651,PF03426,NF033675,COG3470	N/A	N/A	N/A	N/A
KOfam	UHGV-0456656_15	K07273	203.3	0	acm; lysozyme	N/A
PHROG	UHGV-0456656_15	phrog_291	156.6	0	endolysin	lysis
UniRef90	UHGV-0456656_15	UniRef90_UPI00164A97A0	535.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0456656_15	1410616.JHXE01000012_gene160	158.0	8.06994e-41	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0456656_15	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0456656_15	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0456656_15	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_17	phrog_1129	60.9	1.7e-17	holin	lysis
UniRef90	UHGV-0456656_17	UniRef90_UPI00164CD48B	161.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0456656_17	742740.HMPREF9474_03522	102.0	1.38e-27	N/A	N/A
Pfam	UHGV-0456656_17	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0456656_17	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-0456656_18	UniRef90_UPI000A1C899A	75.5	2.3e-16	N/A	N/A
Pfam	UHGV-0456656_18	PF20124	N/A	N/A	N/A	DUF6514
structural_annotation	UHGV-0456656_18	PF20124	N/A	N/A	N/A	N/A
UniRef90	UHGV-0456656_19	UniRef90_UPI0006C78861	59.3	0.000000000823	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0456656_19	1235797.C816_01775	48.9	0.00000124	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0456656_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0456656_20	K14059	98.1	1.5e-28	int; integrase	N/A
PHROG	UHGV-0456656_20	phrog_1	103.7	2.2e-30	integrase	integration and excision
UniRef90	UHGV-0456656_20	UniRef90_UPI0011C8F252	320.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0456656_20	693746.OBV_25530	233.0	0	Phage integrase family	N/A
Pfam	UHGV-0456656_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0456656_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0456656_20	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0456656_21	K07339	62.1	8.4e-18	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0456656_21	phrog_353	86.3	1.8e-25	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0456656_21	UniRef90_A0A1Q6T334	120.0	1.29e-34	Toxin HicA	N/A
eggNOG-mapper	UHGV-0456656_21	478749.BRYFOR_07601	89.0	6.94e-23	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0456656_21	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0456656_21	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0456656_21	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0456656_22	K18843	69.6	6.3e-20	hicB; antitoxin HicB	N/A
PHROG	UHGV-0456656_22	phrog_497	75.2	1.2e-21	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0456656_22	UniRef90_A0A1Q6T3W5	193.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0456656_22	657322.FPR_23750	191.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0456656_22	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0456656_22	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0456656_22	PF15919,COG1598	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_23	phrog_31229	101.9	4.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0456656_23	1408437.JNJN01000047_gene709	132.0	6.53e-38	N/A	N/A
PHROG	UHGV-0456656_24	phrog_4980	115.6	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0456656_24	UniRef90_UPI001876A0BB	87.4	3.73e-17	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0456656_24	658086.HMPREF0994_06731	79.7	0.0000000000000167	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0456656_24	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0456656_24	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0456656_24	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0456656_25	K22300	56.7	5.4e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0456656_25	phrog_4	50.2	0.000000000000058	transcriptional repressor	transcription regulation
UniRef90	UHGV-0456656_25	UniRef90_UPI00195B9E4B	142.0	1.07003e-41	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0456656_25	411471.SUBVAR_05818	110.0	1.52e-29	sequence-specific DNA binding	N/A
Pfam	UHGV-0456656_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0456656_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0456656_25	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_28	phrog_25245	81.0	1.1e-23	N/A	unknown function
UniRef90	UHGV-0456656_28	UniRef90_UPI0011AF61A0	166.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0456656_28	657322.FPR_26620	103.0	1.22e-25	3D domain	N/A
COG	UHGV-0456656_28	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0456656_28	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_29	phrog_374	192.7	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0456656_29	UniRef90_A0A7W0C2S3	189.0	0	Putative transcriptional regulator	N/A
eggNOG-mapper	UHGV-0456656_29	500635.MITSMUL_03105	163.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
COG	UHGV-0456656_29	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0456656_29	PF18337	N/A	N/A	N/A	N/A
PHROG	UHGV-0456656_30	phrog_30822	45.2	0.0000000000011	N/A	unknown function
UniRef90	UHGV-0456656_30	UniRef90_UPI00164AA766	65.9	0.000000000015	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0456656_30	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0456656_30	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A