UHGV-0477710 (vOTU-153825)

Viral Genome: UHGV-0477710

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0477710
vOTU ID	vOTU-153825
Representative Genome?	Yes
Source	COPSAC
Original genome ID	OTU_4598
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.14 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.04
Jumbo phage	No

Genome content
Genome length (bp)	25,361
GC content	42.87%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	29
CDS density	90%
Average CDS length (bps)	789.10
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.14)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0477710_2	K18830	41.3	0.0000000000029	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0477710_2	phrog_8	48.9	0.000000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0477710_2	UniRef90_A0A2N5NVN2	180.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0477710_2	1235790.C805_00012	125.0	1.08e-35	Helix-turn-helix domain	N/A
Pfam	UHGV-0477710_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0477710_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0477710_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_3	phrog_7974	62.8	4.3e-18	N/A	unknown function
UniRef90	UHGV-0477710_3	UniRef90_A7B3P6	541.0	0	N/A	N/A
eggNOG-mapper	UHGV-0477710_3	411470.RUMGNA_02177	541.0	0	belongs to the thioredoxin family	N/A
Pfam	UHGV-0477710_3	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0477710_3	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
structural_annotation	UHGV-0477710_3	PF14020,PF02368,COG1721	N/A	N/A	N/A	N/A
KOfam	UHGV-0477710_4	K06400	263.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0477710_4	phrog_95	293.6	0	integrase	integration and excision
UniRef90	UHGV-0477710_4	UniRef90_A7B3P5	910.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0477710_4	411470.RUMGNA_02175	910.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0477710_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0477710_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0477710_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
PHROG	UHGV-0477710_5	phrog_18666	41.9	1.8e-16	N/A	unknown function
UniRef90	UHGV-0477710_6	UniRef90_A0A2N5Q1U3	184.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0477710_6	411470.RUMGNA_03786	91.7	2.9e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0477710_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0477710_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0477710_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_7	phrog_374	64.5	1.3e-39	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0477710_7	UniRef90_UPI0013DDD289	150.0	9.99995e-41	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0477710_7	478749.BRYFOR_05054	111.0	9.38e-27	AP2 domain protein	N/A
AcrCatalog	UHGV-0477710_7	cluster_5564	87.4	1.37e-23	NA	N/A
structural_annotation	UHGV-0477710_7	PF18337,PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-0477710_9	K01448	96.1	4.4e-28	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0477710_9	phrog_435	164.6	0	endolysin	lysis
UniRef90	UHGV-0477710_9	UniRef90_A0A415SBY0	526.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0477710_9	411470.RUMGNA_02814	469.0	0	Ami_3	N/A
Pfam	UHGV-0477710_9	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0477710_9	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0477710_9	PF01520,MF_00417,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_11	phrog_918	118.7	1.8e-35	N/A	unknown function
UniRef90	UHGV-0477710_11	UniRef90_UPI001CF89D06	141.0	3.44019e-42	N/A	N/A
eggNOG-mapper	UHGV-0477710_11	1140001.I571_01827	120.0	1.77e-34	N/A	N/A
Pfam	UHGV-0477710_11	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0477710_11	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_12	phrog_199	77.0	2e-22	holin	lysis
UniRef90	UHGV-0477710_12	UniRef90_A0A2N5P5I5	285.0	0	Holin	N/A
eggNOG-mapper	UHGV-0477710_12	1469948.JPNB01000001_gene536	196.0	0	TIGRFAM toxin secretion phage lysis holin	N/A
Pfam	UHGV-0477710_12	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0477710_12	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0477710_12	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0477710_12	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0477710_13	K16628	61.0	3e-29	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0477710_13	phrog_588	489.3	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0477710_13	UniRef90_UPI00156EB2FA	1368.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0477710_13	411470.RUMGNA_02230	951.0	0	N/A	N/A
Pfam	UHGV-0477710_13	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0477710_13	PF14594,PF08931,PF13895,TIGR01665,TIGR04488,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_14	phrog_202	315.1	0	distal tail protein Dit	tail
UniRef90	UHGV-0477710_14	UniRef90_A7B3U8	928.0	0	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-0477710_14	411470.RUMGNA_02229	928.0	0	N/A	N/A
Pfam	UHGV-0477710_14	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0477710_14	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0477710_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0477710_14	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_15	phrog_9959	162.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0477710_15	UniRef90_A0A8B3C0A6	822.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0477710_15	411470.RUMGNA_02228	825.0	0	tape measure	N/A
Pfam	UHGV-0477710_15	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0477710_15	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0477710_15	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0477710_15	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_16	phrog_706	150.7	7.00649e-45	N/A	unknown function
UniRef90	UHGV-0477710_16	UniRef90_A7B3U5	318.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0477710_16	411470.RUMGNA_02226	318.0	0	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-0477710_16	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0477710_16	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_17	phrog_4450	111.5	5.5e-33	N/A	unknown function
UniRef90	UHGV-0477710_17	UniRef90_A0A7M2RHR3	57.0	0.0000000754	AP endonuclease	N/A
eggNOG-mapper	UHGV-0477710_17	411470.RUMGNA_02225	213.0	0	N/A	N/A
Pfam	UHGV-0477710_17	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0477710_17	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_18	phrog_3099	154.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0477710_18	411470.RUMGNA_02224	289.0	0	N/A	N/A
structural_annotation	UHGV-0477710_18	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_19	phrog_3266	158.6	0	tail completion	connector
eggNOG-mapper	UHGV-0477710_19	411470.RUMGNA_02223	268.0	0	N/A	N/A
structural_annotation	UHGV-0477710_19	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_20	phrog_556	134.5	3e-40	minor head protein	head and packaging
UniRef90	UHGV-0477710_20	UniRef90_UPI001C8E2A32	208.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0477710_20	411470.RUMGNA_02222	211.0	0	N/A	N/A
structural_annotation	UHGV-0477710_20	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_21	phrog_3366	93.8	5.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0477710_21	411470.RUMGNA_02221	219.0	0	N/A	N/A
Pfam	UHGV-0477710_21	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0477710_21	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_22	phrog_541	89.1	4.1e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0477710_22	411462.DORLON_00785	76.3	4.76e-16	N/A	N/A
UniRef90	UHGV-0477710_23	UniRef90_UPI00189FFCE4	137.0	2.64e-39	head fiber protein	N/A
eggNOG-mapper	UHGV-0477710_23	435591.BDI_0884	76.3	0.00000000000000711	Head fiber protein	N/A
Pfam	UHGV-0477710_23	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
PHROG	UHGV-0477710_24	phrog_422	227.0	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0477710_24	658655.HMPREF0988_02560	414.0	0	N/A	N/A
structural_annotation	UHGV-0477710_24	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_25	phrog_194	72.0	1.1e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-0477710_25	UniRef90_A0A6N2UWT0	135.0	1.03e-36	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0477710_25	1304866.K413DRAFT_3037	89.4	1.03e-19	Phage minor structural protein GP20	N/A
Pfam	UHGV-0477710_25	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0477710_25	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_26	phrog_581	298.0	0	minor head protein	head and packaging
UniRef90	UHGV-0477710_26	UniRef90_A0A2N5PKG3	721.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0477710_26	1235799.C818_04219	519.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0477710_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0477710_26	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0477710_26	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_27	phrog_533	293.4	0	portal protein	head and packaging
UniRef90	UHGV-0477710_27	UniRef90_A0A2N5PKH7	864.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0477710_27	658655.HMPREF0988_02564	490.0	0	N/A	N/A
structural_annotation	UHGV-0477710_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0477710_28	K06909	95.0	9.6e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0477710_28	phrog_2	98.3	1.3e-28	terminase large subunit	head and packaging
UniRef90	UHGV-0477710_28	UniRef90_A0A2N5PKF3	773.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0477710_28	411470.RUMGNA_02211	633.0	0	N/A	N/A
Pfam	UHGV-0477710_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0477710_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0477710_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0477710_28	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0477710_29	phrog_309	201.7	0	terminase small subunit	head and packaging
UniRef90	UHGV-0477710_29	UniRef90_UPI00046706B5	283.0	0	transposase	N/A
eggNOG-mapper	UHGV-0477710_29	411470.RUMGNA_02210	201.0	0	transposase activity	N/A
Pfam	UHGV-0477710_29	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0477710_29	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0477710_29	PF07141	N/A	N/A	N/A	N/A