UHGV-0503198 (vOTU-166737)

Viral Genome: UHGV-0503198

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0503198
vOTU ID	vOTU-166737
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS743404\|NODE_31_length_28599_cov_13.320558
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.29 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9802
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.06
Jumbo phage	No

Genome content
Genome length (bp)	28,599
GC content	39.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	91%
Average CDS length (bps)	633.37
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.29)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0503198_1	K07273	177.4	0	acm; lysozyme	N/A
PHROG	UHGV-0503198_1	phrog_291	154.0	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0503198_1	UniRef90_A0A373KPS8	284.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0503198_1	1120933.ATUY01000002_gene158	165.0	0	lysozyme activity	N/A
Pfam	UHGV-0503198_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0503198_1	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0503198_1	PF01183,NF007360,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_2	phrog_443	65.9	9.4e-19	holin	lysis
UniRef90	UHGV-0503198_2	UniRef90_R6R2Q3	89.4	4.49e-22	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0503198_2	1235797.C816_04172	82.4	4.29e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0503198_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0503198_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_3	phrog_1863	69.5	3.7e-21	N/A	unknown function
UniRef90	UHGV-0503198_3	UniRef90_UPI001F223E8B	103.0	1.78e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0503198_3	1226322.HMPREF1545_04027	75.5	5.39e-17	N/A	N/A
UniRef90	UHGV-0503198_5	UniRef90_A0A374N9Y2	170.0	7.00649e-45	N/A	N/A
structural_annotation	UHGV-0503198_5	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_6	phrog_1067	86.6	9.7e-26	minor head protein	head and packaging
UniRef90	UHGV-0503198_6	UniRef90_A0A1G5CPD2	143.0	2.86e-35	Phage minor structural protein, N-terminal region	N/A
NCBIFam	UHGV-0503198_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
structural_annotation	UHGV-0503198_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_7	phrog_33	71.7	1.6e-20	distal tail protein Dit	tail
UniRef90	UHGV-0503198_7	UniRef90_A0A1G5CPA2	128.0	2.8e-32	Phage-related protein	N/A
eggNOG-mapper	UHGV-0503198_7	1160721.RBI_I01575	87.8	6.9e-18	Phage tail protein	N/A
COG	UHGV-0503198_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0503198_7	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0503198_8	K20283	84.7	2.2e-25	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0503198_8	phrog_1272	258.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0503198_8	UniRef90_A0A412ULX0	1521.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0503198_8	588581.Cpap_1264	247.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0503198_8	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0503198_8	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0503198_8	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0503198_9	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_10	phrog_88	72.9	4.2e-21	major tail protein	tail
UniRef90	UHGV-0503198_10	UniRef90_A0A1G5CNS8	145.0	1.43e-40	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0503198_10	1321782.HMPREF1986_01362	65.1	0.000000000192	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0503198_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0503198_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0503198_11	UniRef90_UPI000E5564A4	268.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0503198_11	1235792.C808_00089	50.1	0.00000847	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0503198_11	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0503198_11	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0503198_12	272623.L59277	51.6	0.0000006	N/A	N/A
structural_annotation	UHGV-0503198_12	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_13	phrog_19734	72.3	5.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0503198_13	86416.Clopa_0343	61.6	0.000000000116	N/A	N/A
NCBIFam	UHGV-0503198_13	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0503198_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_14	phrog_749	56.2	5.3e-16	N/A	unknown function
UniRef90	UHGV-0503198_14	UniRef90_A0A1G5CMX8	107.0	4.3e-28	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0503198_14	1211817.CCAT010000053_gene2133	58.5	0.000000000825	N/A	N/A
PHROG	UHGV-0503198_15	phrog_10	107.8	1.1e-31	major head protein	head and packaging
UniRef90	UHGV-0503198_15	UniRef90_A0A412ULW9	601.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0503198_15	349161.Dred_2604	320.0	0	Phage capsid family	N/A
Pfam	UHGV-0503198_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0503198_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0503198_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0503198_15	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0503198_16	K01358	141.0	1.10002e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0503198_16	phrog_94	213.3	0	head maturation protease	head and packaging
UniRef90	UHGV-0503198_16	UniRef90_A0A412ULU1	425.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0503198_16	86416.Clopa_0340	170.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0503198_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0503198_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0503198_16	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_17	phrog_12	101.1	8.1e-30	portal protein	head and packaging
UniRef90	UHGV-0503198_17	UniRef90_A0A412ULV9	734.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0503198_17	349161.Dred_2606	263.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0503198_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0503198_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0503198_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0503198_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_18	phrog_9	301.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0503198_18	UniRef90_A0A412UM03	1036.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0503198_18	86416.Clopa_0337	632.0	0	Phage Terminase	N/A
Pfam	UHGV-0503198_18	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0503198_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0503198_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0503198_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_19	phrog_5110	80.3	1.5e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0503198_19	UniRef90_A0A1M5U1D5	112.0	2.41e-30	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0503198_19	1211817.CCAT010000053_gene2128	99.4	8.96e-26	N/A	N/A
Pfam	UHGV-0503198_19	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0503198_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_20	phrog_119	70.5	2.3e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0503198_20	UniRef90_A0A412ULY9	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0503198_20	1158607.UAU_01026	100.0	2.91e-26	HNH endonuclease	N/A
Pfam	UHGV-0503198_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0503198_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0503198_21	431943.CKL_4074	50.8	0.00000453	N/A	N/A
structural_annotation	UHGV-0503198_21	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_22	phrog_3584	149.6	1.96182e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0503198_22	1235800.C819_00515	74.7	0.000000000000397	N/A	N/A
structural_annotation	UHGV-0503198_22	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_25	phrog_8684	90.8	1.2e-26	N/A	unknown function
UniRef90	UHGV-0503198_25	UniRef90_A0A374DV44	150.0	1.54143e-44	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0503198_25	619693.HMPREF6745_2499	76.6	3.19e-16	YopX protein	N/A
Pfam	UHGV-0503198_25	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0503198_25	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0503198_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_26	phrog_2118	118.8	4.6e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0503198_26	UniRef90_A0A374DVG7	247.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0503198_26	610130.Closa_0730	151.0	1.4013e-45	HNH endonuclease	N/A
Pfam	UHGV-0503198_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0503198_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0503198_26	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_28	phrog_323	72.9	9.7e-23	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0503198_28	UniRef90_UPI001C01CFF8	290.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-0503198_28	394503.Ccel_3305	335.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-0503198_28	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0503198_28	PF11112,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0503198_30	K03497	156.4	0	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0503198_30	phrog_6218	245.0	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0503198_30	UniRef90_UPI000E47CAB6	739.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0503198_30	394503.Ccel_3306	253.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0503198_30	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0503198_30	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0503198_30	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0503198_30	PF02195,PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0503198_33	UniRef90_A0A2N0ULT9	136.0	8.52998e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0503198_33	1283300.ATXB01000001_gene1737	46.2	0.00000684	DNA excision	N/A
Pfam	UHGV-0503198_33	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0503198_33	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0503198_33	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0503198_33	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_37	phrog_585	115.0	4.5e-34	N/A	unknown function
UniRef90	UHGV-0503198_37	UniRef90_UPI00051C896C	143.0	1.32997e-41	N/A	N/A
eggNOG-mapper	UHGV-0503198_37	1033744.CAEL01000029_gene1306	128.0	4.7e-36	N/A	N/A
Pfam	UHGV-0503198_37	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0503198_37	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-0503198_39	UniRef90_UPI000E51362F	131.0	8.83e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0503198_39	411461.DORFOR_00030	51.6	0.000000061	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0503198_39	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0503198_39	PF13443,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_40	phrog_8	47.3	0.00000000000039	transcriptional regulator	transcription regulation
UniRef90	UHGV-0503198_40	UniRef90_UPI0015F3DE1D	283.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0503198_40	411463.EUBVEN_00115	77.0	2.32e-16	Helix-turn-helix domain	N/A
Pfam	UHGV-0503198_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0503198_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0503198_40	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0503198_41	phrog_1914	146.5	1.4013e-43	N/A	unknown function
UniRef90	UHGV-0503198_41	UniRef90_A0A374NDM7	345.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0503198_41	1160721.RBI_I01604	169.0	0	N/A	N/A
Pfam	UHGV-0503198_41	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0503198_41	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0503198_41	PF06114,COG2856	N/A	N/A	N/A	N/A