UHGV-0613667 (vOTU-067690)

Viral Genome: UHGV-0613667

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0613667
vOTU ID	vOTU-067690
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	ERS743397\|NODE_24_length_39095_cov_150.960784
Associated BioSample	SAMEA3444265
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.68 (High-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.79
Jumbo phage	No

Genome content
Genome length (bp)	39,095
GC content	52.98%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	94%
Average CDS length (bps)	563.45
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.68)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0613667_2	phrog_119	60.0	3.4e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0613667_2	UniRef90_A0A2A7B6I3	227.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0613667_2	610130.Closa_0739	110.0	7.73e-30	HNH nucleases	N/A
Pfam	UHGV-0613667_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0613667_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-0613667_3	K00571	213.7	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0613667_3	phrog_67	194.2	0	DNA methyltransferase	other
UniRef90	UHGV-0613667_3	UniRef90_UPI00055C7461	350.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0613667_3	1444310.JANV01000096_gene3256	167.0	0	DNA methylase	N/A
PADLOC	UHGV-0613667_3	MTase_II_00051	173.3	0	Type II methyltransferase	RM
Pfam	UHGV-0613667_3	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0613667_3	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0613667_3	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0613667_11	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0613667_12	K03497	90.3	3.8e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0613667_12	phrog_4715	115.5	3.8e-34	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0613667_12	UniRef90_A0A2A7B6Q0	367.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0613667_12	411471.SUBVAR_05842	181.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0613667_12	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0613667_12	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0613667_12	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0613667_13	UniRef90_A0A355JDC2	107.0	1.12e-26	N/A	N/A
KOfam	UHGV-0613667_14	K03496	203.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0613667_14	phrog_164	151.4	5.60519e-45	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0613667_14	UniRef90_A0A2A7B6H3	352.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0613667_14	411471.SUBVAR_05839	226.0	0	AAA domain	N/A
Pfam	UHGV-0613667_14	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0613667_14	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0613667_14	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_16	phrog_6969	58.0	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0613667_16	748224.HMPREF9436_00735	157.0	2.25609e-43	N/A	N/A
Pfam	UHGV-0613667_16	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0613667_16	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0613667_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0613667_16	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0613667_17	K03111	144.1	1.3999e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0613667_17	phrog_44	146.5	1.4013e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0613667_17	UniRef90_A0A2A7ALU9	206.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0613667_17	748224.HMPREF9436_00638	207.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0613667_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0613667_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0613667_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0613667_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0613667_17	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_18	phrog_7566	85.9	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-0613667_18	411471.SUBVAR_05830	103.0	1.3e-27	N/A	N/A
PHROG	UHGV-0613667_20	phrog_72	48.6	0.00000000000015	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0613667_20	411471.SUBVAR_05829	139.0	3.66e-39	N/A	N/A
Pfam	UHGV-0613667_20	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0613667_20	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_21	phrog_14970	45.9	0.000000000001	N/A	unknown function
COG	UHGV-0613667_21	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0613667_21	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
Pfam	UHGV-0613667_26	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0613667_29	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0613667_30	UniRef90_A0A2A7AM72	158.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0613667_30	1378168.N510_01712	78.6	3.55e-16	N/A	N/A
structural_annotation	UHGV-0613667_30	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0613667_31	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0613667_35	K02342	78.7	6.8e-23	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0613667_35	phrog_192	90.7	1.3e-26	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0613667_35	UniRef90_UPI001EE95DBE	84.3	0.0000000000000137	3'-5' exoribonuclease	N/A
eggNOG-mapper	UHGV-0613667_35	665956.HMPREF1032_02791	121.0	1.36e-27	N/A	N/A
PADLOC	UHGV-0613667_35	cd06127	73.0	8.1e-21	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0613667_35	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0613667_35	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
COG	UHGV-0613667_35	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0613667_35	PF13361,PF00533,MF_00157,NF008746,COG2925	N/A	N/A	N/A	N/A
KOfam	UHGV-0613667_38	K07729	42.4	0.0000000000074	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0613667_38	phrog_1373	44.6	0.00000000000084	transcriptional regulator	transcription regulation
UniRef90	UHGV-0613667_38	UniRef90_A0A2A7AM70	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0613667_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0613667_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0613667_38	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0613667_39	K14059	178.9	0	int; integrase	N/A
PHROG	UHGV-0613667_39	phrog_1	163.4	0	integrase	integration and excision
UniRef90	UHGV-0613667_39	UniRef90_A0A367GI93	223.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0613667_39	1507.HMPREF0262_00307	162.0	1.30321e-43	Phage integrase family	N/A
Pfam	UHGV-0613667_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0613667_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0613667_39	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0613667_40	1408437.JNJN01000043_gene801	99.0	5.85e-23	N/A	N/A
eggNOG-mapper	UHGV-0613667_41	658655.HMPREF0988_00916	120.0	2.13e-33	N/A	N/A
PHROG	UHGV-0613667_42	phrog_16490	106.3	2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0613667_42	1408437.JNJN01000043_gene803	164.0	0	N/A	N/A
PHROG	UHGV-0613667_47	phrog_15303	82.9	2.8e-24	N/A	unknown function
PHROG	UHGV-0613667_48	phrog_1863	77.5	8.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0613667_48	718252.FP2_04900	146.0	4.2039e-45	N/A	N/A
KOfam	UHGV-0613667_49	K07273	163.9	0	acm; lysozyme	N/A
PHROG	UHGV-0613667_49	phrog_291	130.7	1.3e-38	endolysin	lysis
UniRef90	UHGV-0613667_49	UniRef90_UPI001D0EE7D8	293.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0613667_49	748224.HMPREF9436_00154	272.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0613667_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0613667_49	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0613667_49	PF01183,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0613667_50	K10804	69.7	3.9e-20	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0613667_50	phrog_5240	83.8	2.3e-24	tail fiber protein	tail
UniRef90	UHGV-0613667_50	UniRef90_A0A354IE87	291.0	0	SGNH_hydro domain-containing protein	N/A
Pfam	UHGV-0613667_50	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-0613667_52	phrog_1067	169.2	0	minor head protein	head and packaging
UniRef90	UHGV-0613667_52	UniRef90_A0A2A7AM44	701.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0613667_52	1123263.AUKY01000068_gene489	187.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0613667_52	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0613667_52	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0613667_52	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0613667_52	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_53	phrog_33	74.8	1.9e-21	distal tail protein Dit	tail
UniRef90	UHGV-0613667_53	UniRef90_UPI00084D54FA	102.0	4.74e-23	phage tail family protein	N/A
eggNOG-mapper	UHGV-0613667_53	1487921.DP68_11370	91.7	1.33e-19	tail component	N/A
NCBIFam	UHGV-0613667_53	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0613667_53	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0613667_53	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_54	phrog_9959	93.7	1.1e-27	tail length tape measure protein	tail
UniRef90	UHGV-0613667_54	UniRef90_A0A2A7ALS3	659.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0613667_54	1224164.B843_03450	181.0	4.90454e-44	Tail protein	N/A
Pfam	UHGV-0613667_54	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0613667_54	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0613667_54	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0613667_54	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_57	phrog_88	94.3	1.2e-27	major tail protein	tail
UniRef90	UHGV-0613667_57	UniRef90_G9YSC5	107.0	1.26e-25	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0613667_57	33035.JPJF01000039_gene278	73.2	0.000000000000279	N/A	N/A
NCBIFam	UHGV-0613667_57	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0613667_57	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_58	phrog_5	48.0	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0613667_58	UniRef90_A0A1C6FG30	115.0	1.37e-29	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0613667_58	908340.HMPREF9406_2573	110.0	1.25e-28	N/A	N/A
structural_annotation	UHGV-0613667_58	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0613667_59	999413.HMPREF1094_02005	68.2	0.000000000000201	N/A	N/A
structural_annotation	UHGV-0613667_59	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_60	phrog_19734	96.0	3.3e-28	N/A	unknown function
UniRef90	UHGV-0613667_60	UniRef90_A0A0D8I708	80.5	6.04e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0613667_60	349161.Dred_2602	74.7	0.00000000000000177	N/A	N/A
structural_annotation	UHGV-0613667_60	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_61	phrog_749	53.9	0.0000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-0613667_61	1211817.CCAT010000053_gene2133	64.7	0.00000000000437	N/A	N/A
PHROG	UHGV-0613667_62	phrog_10	128.9	3.1e-38	major head protein	head and packaging
UniRef90	UHGV-0613667_62	UniRef90_A0A2A7B712	722.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0613667_62	1235792.C808_00086	449.0	0	Phage capsid family	N/A
Pfam	UHGV-0613667_62	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0613667_62	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0613667_62	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0613667_62	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0613667_62	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0613667_63	K01358	80.2	3.4e-23	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0613667_63	phrog_94	130.0	2.5e-38	head maturation protease	head and packaging
UniRef90	UHGV-0613667_63	UniRef90_UPI00111E41DA	140.0	9.71e-38	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0613667_63	1232452.BAIB02000007_gene1626	134.0	7.26e-36	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0613667_63	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0613667_63	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0613667_63	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_64	phrog_12	124.5	7.6e-37	portal protein	head and packaging
UniRef90	UHGV-0613667_64	UniRef90_A0A2A7B6S8	545.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0613667_64	349161.Dred_2606	264.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0613667_64	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0613667_64	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0613667_64	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0613667_64	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0613667_65	phrog_2699	84.6	8.5e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0613667_65	UniRef90_A0A358Q0T6	213.0	0	Terminase large subunit (Fragment)	N/A
eggNOG-mapper	UHGV-0613667_65	349161.Dred_2607	278.0	0	Phage terminase-like protein large subunit	N/A
COG	UHGV-0613667_65	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0613667_65	PF20441,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A