UHGV-0880401 (vOTU-033319)

Viral Genome: UHGV-0880401

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0880401
vOTU ID	vOTU-033319
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS2267586\|NODE_5_length_47974_cov_40.040965
Associated BioSample	SAMN07211084
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.13 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9634
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.69
Jumbo phage	No

Genome content
Genome length (bp)	47,974
GC content	50.55%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	92%
Average CDS length (bps)	751.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.13)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0880401_1	phrog_4259	113.6	7.3e-34	N/A	unknown function
UniRef90	UHGV-0880401_1	UniRef90_D4P7B9	93.6	2.41e-22	Gp008	N/A
eggNOG-mapper	UHGV-0880401_1	691965.D4P7B9_9CAUD	93.6	4.03e-23	N/A	N/A
PHROG	UHGV-0880401_2	phrog_4321	201.6	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0880401_2	UniRef90_A0A649V6Q6	168.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0880401_2	411460.RUMTOR_01352	186.0	0	N/A	N/A
PHROG	UHGV-0880401_3	phrog_4247	162.0	0	virion structural protein	head and packaging
UniRef90	UHGV-0880401_3	UniRef90_A0A6B9JBW4	129.0	1.35e-36	Head-to-tail adaptor	N/A
eggNOG-mapper	UHGV-0880401_3	428125.CLOLEP_01407	124.0	1.33e-35	N/A	N/A
PHROG	UHGV-0880401_4	phrog_7021	65.1	1.4e-25	N/A	unknown function
PHROG	UHGV-0880401_5	phrog_9	244.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0880401_5	UniRef90_A0A7X5ECI8	907.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0880401_5	742740.HMPREF9474_02272	922.0	0	Phage Terminase	N/A
Pfam	UHGV-0880401_5	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0880401_5	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0880401_5	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0880401_5	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_7	phrog_12	110.2	7.4e-33	portal protein	head and packaging
UniRef90	UHGV-0880401_7	UniRef90_A0A1Y4MMD6	574.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0880401_7	742733.HMPREF9469_05032	563.0	0	Phage portal protein	N/A
Pfam	UHGV-0880401_7	PF04860	N/A	N/A	Phage portal protein	Phage_portal
structural_annotation	UHGV-0880401_7	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0880401_8	K06904	67.4	2.2e-19	N/A	N/A
PHROG	UHGV-0880401_8	phrog_3270	778.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0880401_8	UniRef90_UPI001C27C418	759.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0880401_8	691965.D4P7D6_9CAUD	500.0	0	peptidase activity	N/A
Pfam	UHGV-0880401_8	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0880401_8	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0880401_8	PF04586,PF06673,TIGR01543,TIGR01554,COG3740,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_10	phrog_4270	157.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0880401_10	665956.HMPREF1032_00677	139.0	1.15999e-41	N/A	N/A
structural_annotation	UHGV-0880401_10	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0880401_11	UniRef90_A0A7T0M227	95.5	1.12e-23	Tail terminator	N/A
eggNOG-mapper	UHGV-0880401_11	665956.HMPREF1032_00678	96.3	9.6e-25	N/A	N/A
structural_annotation	UHGV-0880401_11	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_12	phrog_2645	311.3	0	major tail protein	tail
UniRef90	UHGV-0880401_12	UniRef90_A0A2U8UI58	254.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-0880401_12	742740.HMPREF9474_02267	241.0	0	N/A	N/A
structural_annotation	UHGV-0880401_12	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_13	phrog_4282	150.6	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0880401_13	428125.CLOLEP_01416	102.0	4.35e-26	N/A	N/A
PHROG	UHGV-0880401_14	phrog_4338	257.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0880401_14	1537917.JU82_06570	207.0	0	N/A	N/A
UniRef90	UHGV-0880401_15	UniRef90_A0A7X4ZPC4	130.0	7.61e-37	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0880401_15	742740.HMPREF9474_02263	128.0	1.48e-36	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0880401_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0880401_15	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_16	phrog_4372	646.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0880401_16	UniRef90_UPI0018A04E48	563.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0880401_16	478749.BRYFOR_08513	480.0	0	Peptidoglycan-binding domain 1 protein	N/A
Pfam	UHGV-0880401_16	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-0880401_16	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
NCBIFam	UHGV-0880401_16	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0880401_16	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
PHROG	UHGV-0880401_19	phrog_9151	41.7	0.000000000021	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0880401_19	UniRef90_A0A0C1JSI1	55.1	0.0000000118	HicB family protein	N/A
eggNOG-mapper	UHGV-0880401_19	472759.Nhal_3030	49.7	0.000000624	HicB family	N/A
COG	UHGV-0880401_19	COG4226	N/A	N/A	Predicted nuclease of the RNAse H fold, HicB family	N/A
UniRef90	UHGV-0880401_20	UniRef90_A0A1W1Z4I2	189.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0880401_20	632245.CLP_1659	116.0	8.23e-29	tail component	N/A
COG	UHGV-0880401_20	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0880401_20	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_21	phrog_21973	186.0	0	tail protein	tail
eggNOG-mapper	UHGV-0880401_21	1391188.A0A068EMP3_9CAUD	179.0	4.37065e-42	N/A	N/A
Pfam	UHGV-0880401_21	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0880401_21	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
PHROG	UHGV-0880401_22	phrog_372	133.7	1.8e-39	tail protein	tail
eggNOG-mapper	UHGV-0880401_22	1231377.C426_1940	58.2	0.00000728	N/A	N/A
Pfam	UHGV-0880401_22	PF05895	N/A	N/A	N/A	DUF859
PHROG	UHGV-0880401_23	phrog_14030	155.8	0	N/A	unknown function
UniRef90	UHGV-0880401_23	UniRef90_G5FC83	186.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0880401_23	411461.DORFOR_00720	176.0	0	N/A	N/A
Pfam	UHGV-0880401_23	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0880401_23	PF01471,PF18342,TIGR02869,TIGR04457,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_24	phrog_937	52.0	0.000000000000011	hemolysin	other
PHROG	UHGV-0880401_25	phrog_13239	74.6	1.5e-21	N/A	unknown function
UniRef90	UHGV-0880401_25	UniRef90_UPI001D0692FC	103.0	2.03e-27	phage holin	N/A
eggNOG-mapper	UHGV-0880401_25	742740.HMPREF9474_02251	104.0	1.1e-28	Putative phage holin Dp-1	N/A
Pfam	UHGV-0880401_25	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0880401_25	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_26	phrog_32444	56.9	2.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0880401_26	478749.BRYFOR_08525	57.0	0.000000201	N/A	N/A
Pfam	UHGV-0880401_26	PF15644	N/A	N/A	Papain fold toxin 1, glutamine deamidase	Gln_amidase
structural_annotation	UHGV-0880401_26	PF21435,NF011786	N/A	N/A	N/A	N/A
KOfam	UHGV-0880401_28	K14059	178.1	0	int; integrase	N/A
PHROG	UHGV-0880401_28	phrog_1	173.9	0	integrase	integration and excision
UniRef90	UHGV-0880401_28	UniRef90_A0A084JMB3	136.0	1.04e-33	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0880401_28	1304866.K413DRAFT_1893	137.0	6.79e-35	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0880401_28	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0880401_28	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0880401_28	PF00589,PF02920,MF_01808,TIGR02224,COG4974,COG3422	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_29	phrog_11237	163.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0880401_29	742740.HMPREF9474_02326	157.0	0	N/A	N/A
PHROG	UHGV-0880401_31	phrog_15309	58.6	7.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0880401_31	742733.HMPREF9469_05090	57.8	0.000000000356	N/A	N/A
PHROG	UHGV-0880401_32	phrog_15866	52.7	5e-18	N/A	unknown function
eggNOG-mapper	UHGV-0880401_32	428125.CLOLEP_01351	70.1	0.0000000000000554	N/A	N/A
PHROG	UHGV-0880401_33	phrog_17256	134.3	3.8e-40	N/A	unknown function
eggNOG-mapper	UHGV-0880401_33	665950.HMPREF1025_01937	133.0	1.47e-39	N/A	N/A
PHROG	UHGV-0880401_34	phrog_2152	171.9	0	N/A	unknown function
UniRef90	UHGV-0880401_34	UniRef90_UPI001956236B	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0880401_34	665950.HMPREF1025_01940	152.0	7.6651e-43	N/A	N/A
Pfam	UHGV-0880401_34	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0880401_34	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_36	phrog_2152	259.1	0	N/A	unknown function
UniRef90	UHGV-0880401_36	UniRef90_UPI0011CA98EE	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-0880401_36	411460.RUMTOR_02024	276.0	0	N/A	N/A
Pfam	UHGV-0880401_36	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0880401_36	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_38	phrog_4079	146.8	1.90577e-43	N/A	unknown function
eggNOG-mapper	UHGV-0880401_38	742733.HMPREF9469_05076	135.0	2.21e-37	N/A	N/A
PHROG	UHGV-0880401_40	phrog_236	89.9	5.3e-26	nucleotide kinase	other
UniRef90	UHGV-0880401_40	UniRef90_A0A173Z9D7	110.0	4.59e-30	N/A	N/A
eggNOG-mapper	UHGV-0880401_40	742740.HMPREF9474_02311	103.0	3e-28	N/A	N/A
Pfam	UHGV-0880401_40	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0880401_41	phrog_2152	266.8	0	N/A	unknown function
UniRef90	UHGV-0880401_41	UniRef90_UPI001D085778	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-0880401_41	411460.RUMTOR_02029	244.0	0	N/A	N/A
Pfam	UHGV-0880401_41	PF19880	N/A	N/A	N/A	DUF6353
structural_annotation	UHGV-0880401_41	PF19880	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_43	phrog_14968	82.8	1.9e-24	N/A	unknown function
UniRef90	UHGV-0880401_43	UniRef90_A0A1Y4MRK1	68.9	0.000000000000016	Histidine kinase	N/A
eggNOG-mapper	UHGV-0880401_43	428125.CLOLEP_01370	67.4	0.0000000000000112	N/A	N/A
PHROG	UHGV-0880401_45	phrog_4695	143.0	4.59626e-43	N/A	unknown function
eggNOG-mapper	UHGV-0880401_45	742740.HMPREF9474_02307	129.0	8.05e-35	N/A	N/A
PHROG	UHGV-0880401_46	phrog_4678	99.1	3.9e-29	N/A	unknown function
eggNOG-mapper	UHGV-0880401_46	665950.HMPREF1025_01954	111.0	7.46e-30	N/A	N/A
PHROG	UHGV-0880401_48	phrog_4210	1494.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0880401_48	UniRef90_A0A7X5IUT2	1389.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-0880401_48	428125.CLOLEP_01375	1389.0	0	DNA polymerase type-B family	N/A
Pfam	UHGV-0880401_48	PF19263	N/A	N/A	N/A	DUF5906
structural_annotation	UHGV-0880401_48	PF05272,PF09250,MF_00016,NF011296,COG3378	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_50	phrog_19852	71.9	5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0880401_50	742740.HMPREF9474_02297	59.3	0.0000000000249	N/A	N/A
KOfam	UHGV-0880401_53	K02336	41.7	0.000000000006	polB; DNA polymerase II [EC:2.7.7.7]	N/A
PHROG	UHGV-0880401_53	phrog_4210	516.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0880401_53	UniRef90_A0A6G6Y006	350.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0880401_53	428125.CLOLEP_01375	514.0	0	DNA polymerase type-B family	N/A
structural_annotation	UHGV-0880401_53	PF00136,MF_04100,NF004418,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_56	phrog_4787	205.2	0	single strand annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0880401_56	UniRef90_D4P7I8	164.0	0	Gp077	N/A
eggNOG-mapper	UHGV-0880401_56	428125.CLOLEP_01377	214.0	0	N/A	N/A
structural_annotation	UHGV-0880401_56	PF21265,MF_04153	N/A	N/A	N/A	N/A
PHROG	UHGV-0880401_57	phrog_7024	49.0	0.000000000000063	N/A	unknown function
eggNOG-mapper	UHGV-0880401_57	755731.Clo1100_3601	48.5	0.00000471	N/A	N/A
PHROG	UHGV-0880401_59	phrog_62	46.7	0.00000000000026	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0880401_59	UniRef90_A0A4Q5C8W0	345.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0880401_59	411460.RUMTOR_01381	345.0	0	Helicase conserved C-terminal domain	N/A
COG	UHGV-0880401_59	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0880401_59	PF13872,MF_04148,TIGR04095,COG1702	N/A	N/A	N/A	N/A