UHGV-0963925 (vOTU-053685)

Viral Genome: UHGV-0963925

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0963925
vOTU ID	vOTU-053685
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS2563892\|NODE_12_length_45290_cov_35.457234
Associated BioSample	SAMN07646523
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9758
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.95
Jumbo phage	No

Genome content
Genome length (bp)	45,269
GC content	35.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	90%
Average CDS length (bps)	592.00
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0963925_2	UniRef90_UPI0018C9F0A1	294.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0963925_2	1158607.UAU_05156	81.6	0.00000000000012	Terminase RNAseH like domain	N/A
COG	UHGV-0963925_2	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0963925_2	PF20441,PF04466,MF_04148,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_3	phrog_16496	259.5	0	portal protein	head and packaging
UniRef90	UHGV-0963925_3	UniRef90_UPI00115E0FBB	265.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0963925_3	226185.EF_2111	295.0	0	N/A	N/A
structural_annotation	UHGV-0963925_3	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_4	phrog_37970	79.6	4.4e-23	N/A	unknown function
PHROG	UHGV-0963925_7	phrog_34060	53.1	0.0000000000000056	N/A	unknown function
eggNOG-mapper	UHGV-0963925_7	1158612.I580_02502	79.0	9.37e-18	N/A	N/A
PHROG	UHGV-0963925_8	phrog_37716	145.5	1.96182e-44	N/A	unknown function
structural_annotation	UHGV-0963925_8	PF05929,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_9	phrog_37094	334.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0963925_9	226185.EF_2104	321.0	0	N/A	N/A
structural_annotation	UHGV-0963925_9	PF05065,MF_04133,NF033394,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_10	phrog_16343	120.5	4.6e-37	head-tail adaptor	connector
eggNOG-mapper	UHGV-0963925_11	1158612.I580_02501	63.5	0.00000000000263	N/A	N/A
structural_annotation	UHGV-0963925_12	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_14	phrog_14985	287.6	0	virion structural protein	head and packaging
UniRef90	UHGV-0963925_14	UniRef90_C7D2C1	281.0	0	Predicted protein	N/A
eggNOG-mapper	UHGV-0963925_14	1158612.I580_02499	341.0	0	N/A	N/A
structural_annotation	UHGV-0963925_14	PF21582,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_15	phrog_37229	57.7	9.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0963925_15	1158608.I583_02867	100.0	1.34e-23	N/A	N/A
PHROG	UHGV-0963925_16	phrog_36722	59.1	8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0963925_16	1158608.I583_02866	74.7	8.96e-17	N/A	N/A
PHROG	UHGV-0963925_17	phrog_1686	155.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0963925_17	UniRef90_A0A1Y4LYM7	2394.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0963925_17	226185.EF_2096	217.0	0	sodium-dependent phosphate transmembrane transporter activity	N/A
Pfam	UHGV-0963925_17	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0963925_17	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0963925_17	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0963925_18	phrog_16596	272.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0963925_18	1158608.I583_02860	326.0	0	N/A	N/A
structural_annotation	UHGV-0963925_18	PF20753,PF21821,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_19	phrog_35125	104.8	1.4013e-45	N/A	unknown function
UniRef90	UHGV-0963925_19	UniRef90_A0A1Y4LYK4	566.0	0	BspA_v domain-containing protein	N/A
eggNOG-mapper	UHGV-0963925_19	226185.EF_2094	168.0	0	N/A	N/A
Pfam	UHGV-0963925_19	PF18220	N/A	N/A	Adhesin BspA variable domain	BspA_v
structural_annotation	UHGV-0963925_19	PF18220	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_20	phrog_35125	51.2	0.000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0963925_20	1158609.I586_02615	127.0	2.23e-34	N/A	N/A
PHROG	UHGV-0963925_21	phrog_7782	118.4	5.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0963925_21	1158608.I583_02856	83.6	2.17e-16	N/A	N/A
structural_annotation	UHGV-0963925_21	PF16578	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_22	phrog_35693	277.9	0	N/A	unknown function
UniRef90	UHGV-0963925_22	UniRef90_A0A1Y4M4P3	1176.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0963925_22	1158609.I586_02613	361.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0963925_22	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0963925_22	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-0963925_23	phrog_24935	55.9	8.1e-16	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0963925_23	1158608.I583_02854	73.2	0.000000000000143	N/A	N/A
PHROG	UHGV-0963925_25	phrog_15722	165.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0963925_25	1158608.I583_02852	183.0	0	N/A	N/A
KOfam	UHGV-0963925_27	K06252	51.8	0.0000000000000017	TN; tenascin	N/A
eggNOG-mapper	UHGV-0963925_27	1395587.P364_0114495	62.8	0.000000174	Fibronectin type 3 domain	N/A
Pfam	UHGV-0963925_27	PF09294	N/A	N/A	Interferon-alpha/beta receptor, fibronectin type III	Interfer-bind
Pfam	UHGV-0963925_27	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0963925_27	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
eggNOG-mapper	UHGV-0963925_28	619693.HMPREF6745_2540	79.3	0.0000000000000039	domain, Protein	N/A
COG	UHGV-0963925_28	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
PHROG	UHGV-0963925_31	phrog_27545	45.2	0.0000000000018	N/A	unknown function
PHROG	UHGV-0963925_32	phrog_608	71.9	9.3e-21	holin	lysis
UniRef90	UHGV-0963925_32	UniRef90_UPI0019604BA7	114.0	7.79e-31	phage holin, LLH family	N/A
eggNOG-mapper	UHGV-0963925_32	1336234.JAGN01000004_gene510	60.5	0.000000000287	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0963925_32	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0963925_32	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0963925_34	K07273	111.8	9.4e-33	acm; lysozyme	N/A
PHROG	UHGV-0963925_34	phrog_291	99.9	4e-29	endolysin	lysis
UniRef90	UHGV-0963925_34	UniRef90_UPI001C395B9C	342.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0963925_34	877415.JNJQ01000013_gene314	164.0	8.40779e-45	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0963925_34	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0963925_34	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0963925_34	PF01183,PF08460,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0963925_35	UniRef90_F2I7B3	80.9	1.49e-18	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0963925_35	866775.HMPREF9243_0425	80.9	2.49e-19	N/A	N/A
Pfam	UHGV-0963925_35	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0963925_35	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0963925_35	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_40	phrog_4973	68.8	7.7e-20	N/A	unknown function
UniRef90	UHGV-0963925_40	UniRef90_A0A3D3Y5F2	65.9	0.00000000000125	DNA-binding protein	N/A
Pfam	UHGV-0963925_40	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
PHROG	UHGV-0963925_41	phrog_434	153.8	1.4013e-45	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0963925_41	UniRef90_A0A1Y4LYQ5	432.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0963925_41	428127.EUBDOL_01507	164.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0963925_41	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0963925_41	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0963925_41	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0963925_41	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_42	phrog_674	94.4	8.2e-28	N/A	unknown function
UniRef90	UHGV-0963925_42	UniRef90_A0A3N0I1A3	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-0963925_42	257314.LJ_0298	57.8	0.000000835	N/A	N/A
Pfam	UHGV-0963925_42	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0963925_42	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_43	phrog_2760	228.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0963925_43	UniRef90_A0A1Y4M4U3	381.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0963925_43	1122173.AXVL01000068_gene1414	213.0	0	DNA synthesis involved in double-strand break repair via homologous recombination	N/A
Pfam	UHGV-0963925_43	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0963925_43	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0963925_43	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0963925_43	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_44	phrog_7566	66.7	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-0963925_44	508419.F8J187_9CAUD	66.2	0.00000000000145	N/A	N/A
structural_annotation	UHGV-0963925_45	PF16454,NF007974	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_46	phrog_1770	50.0	0.000000000000063	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0963925_46	536233.CLO_1822	148.0	3.96567e-43	N/A	N/A
structural_annotation	UHGV-0963925_46	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_47	phrog_374	205.8	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0963925_47	673376.F2VHW3_9CAUD	179.0	0	sequence-specific DNA binding transcription factor activity	N/A
PHROG	UHGV-0963925_49	phrog_5708	206.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0963925_49	UniRef90_R6FH66	224.0	0	Putative phage replication initiation protein	N/A
eggNOG-mapper	UHGV-0963925_49	411459.RUMOBE_01034	201.0	0	DnaD domain protein	N/A
COG	UHGV-0963925_49	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0963925_49	TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0963925_52	phrog_4601	51.6	0.000000000000016	N/A	unknown function
KOfam	UHGV-0963925_54	K00571	123.4	2.6e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0963925_54	phrog_67	90.9	2.5e-28	DNA methyltransferase	other
UniRef90	UHGV-0963925_54	UniRef90_A0A1Y4LYP2	523.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0963925_54	873447.SPB_0705	348.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0963925_54	MTase_II_00157	90.8	7.4e-28	Type II methyltransferase	RM
Pfam	UHGV-0963925_54	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0963925_54	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0963925_54	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0963925_55	K00571	125.1	8.4e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0963925_55	phrog_67	116.8	2.3e-36	DNA methyltransferase	other
UniRef90	UHGV-0963925_55	UniRef90_A0A3E3E030	497.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0963925_55	469596.HMPREF9488_00879	207.0	0	DNA methylase	N/A
PADLOC	UHGV-0963925_55	MTase_II_00157	134.6	3e-40	Type II methyltransferase	RM
Pfam	UHGV-0963925_55	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0963925_55	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0963925_55	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0963925_60	K03111	131.7	9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0963925_60	phrog_44	140.1	1.40004e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0963925_60	UniRef90_U2P590	233.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0963925_60	1235796.C815_00133	130.0	7.14e-37	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0963925_60	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0963925_60	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0963925_60	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0963925_60	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0963925_60	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0963925_61	K07171	77.7	2.4e-22	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	N/A
PHROG	UHGV-0963925_61	phrog_1936	74.8	1.3e-21	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0963925_61	UniRef90_UPI0018949C0F	66.2	0.00000000000838	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0963925_61	1321782.HMPREF1986_00610	60.5	0.000000000398	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0963925_61	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0963925_61	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
structural_annotation	UHGV-0963925_61	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A