UHGV-0992509 (vOTU-024514)

Viral Genome: UHGV-0992509

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0992509
vOTU ID	vOTU-024514
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS2563882\|NODE_27_length_22702_cov_7.212655
Associated BioSample	SAMN07646518
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.24 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9769
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.37
Jumbo phage	No

Genome content
Genome length (bp)	22,702
GC content	47.16%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	30
CDS density	93%
Average CDS length (bps)	704.60
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0992509_1	phrog_12	69.2	1.3e-20	portal protein	head and packaging
UniRef90	UHGV-0992509_1	UniRef90_A0A328UFT7	429.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0992509_1	349161.Dred_2606	204.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0992509_1	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0992509_1	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0992509_1	PF04860,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0992509_2	K01358	137.4	1.4e-40	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0992509_2	phrog_94	254.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0992509_2	UniRef90_A0A1C6FFN6	370.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0992509_2	349161.Dred_2605	285.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0992509_2	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0992509_2	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0992509_2	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_3	phrog_10	151.5	8.40779e-45	major head protein	head and packaging
UniRef90	UHGV-0992509_3	UniRef90_G9YSC0	743.0	0	Cadherin-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0992509_3	1235792.C808_00086	464.0	0	Phage capsid family	N/A
Pfam	UHGV-0992509_3	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0992509_3	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0992509_3	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0992509_3	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0992509_3	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_4	phrog_749	69.1	5.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0992509_4	349161.Dred_2603	94.0	1.22e-23	N/A	N/A
PHROG	UHGV-0992509_5	phrog_19734	128.3	3.6e-38	N/A	unknown function
UniRef90	UHGV-0992509_5	UniRef90_A0A6I7GNS7	152.0	4.2039e-45	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0992509_5	349161.Dred_2602	83.6	5.59e-19	N/A	N/A
NCBIFam	UHGV-0992509_5	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0992509_5	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0992509_6	1235798.C817_04588	90.1	5.24e-22	N/A	N/A
structural_annotation	UHGV-0992509_6	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_7	phrog_5	42.1	0.000000000018	tail completion or Neck1 protein	connector
UniRef90	UHGV-0992509_7	UniRef90_A0A1C6FG30	144.0	6.51001e-41	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0992509_7	1235798.C817_04589	107.0	3.97e-27	N/A	N/A
NCBIFam	UHGV-0992509_7	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0992509_7	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_8	phrog_88	100.8	1.3e-29	major tail protein	tail
UniRef90	UHGV-0992509_8	UniRef90_G9YSC5	129.0	5.54e-34	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0992509_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0992509_8	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0992509_8	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_10	phrog_1272	91.3	1.2e-40	tail length tape measure protein	tail
UniRef90	UHGV-0992509_10	UniRef90_A0A1Y4R6K5	339.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0992509_10	1224164.B843_03450	222.0	0	Tail protein	N/A
Pfam	UHGV-0992509_10	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0992509_10	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0992509_10	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0992509_10	PF20155,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_11	phrog_33	57.3	4.4e-16	distal tail protein Dit	tail
UniRef90	UHGV-0992509_11	UniRef90_A0A1C6H6D2	188.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0992509_11	1032362.F6K8S1_9CAUD	111.0	4.21e-27	Phage tail protein	N/A
structural_annotation	UHGV-0992509_11	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_12	phrog_1067	381.9	0	minor head protein	head and packaging
UniRef90	UHGV-0992509_12	UniRef90_UPI001968120D	921.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0992509_12	1123263.AUKY01000068_gene489	404.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0992509_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0992509_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0992509_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0992509_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_13	phrog_31398	60.0	2.6e-17	N/A	unknown function
UniRef90	UHGV-0992509_13	UniRef90_UPI001967E4F4	572.0	0	BppU family phage baseplate upper protein	N/A
eggNOG-mapper	UHGV-0992509_13	1160721.RBI_I01572	79.7	0.0000000000000801	N/A	N/A
Pfam	UHGV-0992509_13	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0992509_13	PF10651,PF04721,NF038186	N/A	N/A	N/A	N/A
KOfam	UHGV-0992509_14	K19304	97.5	1.8e-28	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0992509_14	phrog_7767	97.5	8.9e-29	metallo-endopeptidase	other
UniRef90	UHGV-0992509_14	UniRef90_A0A3A6EBG8	469.0	0	M23 family peptidase	N/A
eggNOG-mapper	UHGV-0992509_14	1041147.AUFB01000010_gene1454	92.4	7.3e-19	Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-0992509_14	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0992509_14	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0992509_14	PF01551,NF040883,COG0739,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_15	phrog_4105	95.3	4e-28	N/A	unknown function
eggNOG-mapper	UHGV-0992509_15	657322.FPR_27220	117.0	1e-32	N/A	N/A
PHROG	UHGV-0992509_16	phrog_1129	69.6	3.3e-20	holin	lysis
UniRef90	UHGV-0992509_16	UniRef90_A0A0D8J2M2	176.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0992509_16	665956.HMPREF1032_03272	158.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0992509_16	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0992509_16	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0992509_18	K14059	166.4	0	int; integrase	N/A
PHROG	UHGV-0992509_18	phrog_1	164.8	0	integrase	integration and excision
UniRef90	UHGV-0992509_18	UniRef90_UPI0018989279	464.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0992509_18	936580.HMPREF1516_0752	72.8	0.0000000000315	DNA integration	N/A
Pfam	UHGV-0992509_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0992509_18	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0992509_18	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_19	phrog_4980	179.7	0	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0992509_19	UniRef90_R7HFV1	77.0	0.000000000000485	Surface lipoprotein-related family protein	N/A
eggNOG-mapper	UHGV-0992509_19	742818.HMPREF9451_01281	95.9	1.81e-21	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0992509_19	PF10400	N/A	N/A	Virulence activator alpha C-term	Vir_act_alpha_C
Pfam	UHGV-0992509_19	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0992509_19	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0992509_19	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
KOfam	UHGV-0992509_20	K01356	77.8	1.7e-22	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0992509_20	phrog_4	119.0	4.8e-35	transcriptional repressor	transcription regulation
UniRef90	UHGV-0992509_20	UniRef90_A0A3A6ECX9	487.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0992509_20	665956.HMPREF1032_01654	221.0	0	Peptidase S24-like	N/A
Pfam	UHGV-0992509_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0992509_20	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0992509_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0992509_20	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0992509_21	K22300	42.9	0.0000000000093	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0992509_21	phrog_8	47.6	0.00000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-0992509_21	UniRef90_A0A3A6E2Y2	135.0	2.45e-40	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0992509_21	1235792.C808_03097	65.1	0.000000000000247	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0992509_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0992509_21	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0992509_24	cluster_35670	154.0	0	NA	N/A
structural_annotation	UHGV-0992509_24	NF042413	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_25	phrog_1123	47.9	0.00000000000018	N/A	unknown function
structural_annotation	UHGV-0992509_25	PF02002,MF_01804,NF040939,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_27	phrog_862	73.3	4.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0992509_27	926549.KI421517_gene2362	107.0	7.13e-26	N/A	N/A
structural_annotation	UHGV-0992509_27	PF05037,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_28	phrog_398	198.2	0	N/A	unknown function
UniRef90	UHGV-0992509_28	UniRef90_UPI00196739CB	253.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-0992509_28	585503.HMPREF7545_1716	171.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-0992509_28	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-0992509_28	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-0992509_29	phrog_15768	86.5	3.5e-25	N/A	unknown function
UniRef90	UHGV-0992509_29	UniRef90_UPI0018988BDC	82.4	0.00000000000000224	N/A	N/A
eggNOG-mapper	UHGV-0992509_29	929704.Myrod_0677	86.3	2.31e-17	N/A	N/A
structural_annotation	UHGV-0992509_29	PF09681,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0992509_30	K02314	65.1	1.1e-18	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0992509_30	phrog_19	77.5	1.9e-22	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0992509_30	UniRef90_A0A2E2VAQ5	58.2	0.000000668	DNA helicase	N/A
eggNOG-mapper	UHGV-0992509_30	1203606.HMPREF1526_01325	65.9	0.000000000483	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0992509_30	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
COG	UHGV-0992509_30	COG0305	N/A	N/A	Replicative DNA helicase	N/A