UHGV-0993209 (vOTU-004224)

Viral Genome: UHGV-0993209

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0993209
vOTU ID	vOTU-004224
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS2563880\|NODE_17_length_38922_cov_151.298840
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9715
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.85
Jumbo phage	No

Genome content
Genome length (bp)	38,883
GC content	52.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	90%
Average CDS length (bps)	714.61
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0993209_1	563031.HMPREF0666_01114	80.1	0.00000000000000243	N/A	N/A
Pfam	UHGV-0993209_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0993209_2	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0993209_4	PF00412	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_5	phrog_155	83.0	4.8e-24	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0993209_5	UniRef90_A0A1C6J8G0	241.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0993209_5	1268072.PSAB_05935	169.0	0	ERF superfamily	N/A
Pfam	UHGV-0993209_5	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0993209_5	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_6	phrog_1389	71.8	8.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0993209_6	1347392.CCEZ01000060_gene3269	110.0	7.23e-30	N/A	N/A
structural_annotation	UHGV-0993209_6	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_8	phrog_2562	154.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0993209_8	UniRef90_A0A1C6GFP7	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0993209_8	1196322.A370_04251	180.0	0	N/A	N/A
Pfam	UHGV-0993209_8	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0993209_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0993209_8	PF14297,TIGR01714	N/A	N/A	N/A	N/A
KOfam	UHGV-0993209_9	K03111	131.6	9.5e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0993209_9	phrog_44	138.0	6.09999e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0993209_9	UniRef90_A0A1M2ZA25	169.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0993209_9	1105031.HMPREF1141_2832	165.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0993209_9	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0993209_9	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0993209_9	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0993209_9	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0993209_9	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0993209_10	PF19157	N/A	N/A	N/A	N/A
KOfam	UHGV-0993209_11	K01160	62.3	1.3e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0993209_11	phrog_34	70.5	2.7e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0993209_11	UniRef90_UPI00073E9FE9	142.0	1.10002e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0993209_11	697281.Mahau_0558	63.5	0.0000000000256	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
Pfam	UHGV-0993209_11	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0993209_11	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0993209_11	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_12	phrog_424	88.1	1.2e-25	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0993209_12	UniRef90_UPI00195807E8	327.0	0	phosphoadenosine phosphosulfate reductase	N/A
eggNOG-mapper	UHGV-0993209_12	411476.BACOVA_03904	241.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0993209_12	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0993209_15	phrog_38832	45.4	0.000000000000078	N/A	unknown function
eggNOG-mapper	UHGV-0993209_15	665956.HMPREF1032_00143	58.9	0.00000000936	N/A	N/A
PHROG	UHGV-0993209_20	phrog_36	100.4	1.9e-29	transcriptional regulator	transcription regulation
UniRef90	UHGV-0993209_20	UniRef90_A0A3D3FGT2	111.0	7.35e-29	Sigma70_r4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0993209_20	445972.ANACOL_00233	83.6	1.21e-18	N/A	N/A
structural_annotation	UHGV-0993209_20	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_21	phrog_7339	118.1	6.5e-35	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0993209_21	UniRef90_A0A8F2F0X6	350.0	0	Metallophosphoesterase	N/A
eggNOG-mapper	UHGV-0993209_21	1150474.JQJI01000006_gene784	87.4	1.21e-17	metallophosphoesterase	N/A
Pfam	UHGV-0993209_21	PF00149	N/A	N/A	Calcineurin-like phosphoesterase	Metallophos
COG	UHGV-0993209_21	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0993209_21	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_22	phrog_355	66.8	3.4e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0993209_22	UniRef90_UPI00082C1C00	121.0	5.9e-34	N/A	N/A
eggNOG-mapper	UHGV-0993209_22	556263.FSEG_01048	77.8	3.26e-17	N/A	N/A
Pfam	UHGV-0993209_22	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0993209_22	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0993209_23	K07474	62.2	1.8e-17	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0993209_23	phrog_51	68.7	7.6e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0993209_23	UniRef90_A0A7X1LX59	156.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0993209_23	762051.LKI_09660	60.5	0.00000000137	Terminase small subunit	N/A
Pfam	UHGV-0993209_23	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0993209_23	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0993209_23	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0993209_24	K06909	387.5	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0993209_24	phrog_3717	238.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0993209_24	UniRef90_A0A7Y0R4E7	543.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0993209_24	1408823.AXUS01000024_gene2712	542.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0993209_24	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0993209_24	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0993209_24	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0993209_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-0993209_24	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0993209_24	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_27	phrog_422	264.6	0	major head protein	head and packaging
UniRef90	UHGV-0993209_27	UniRef90_G4HEI9	210.0	0	Lj928 prophage protein	N/A
eggNOG-mapper	UHGV-0993209_27	743719.PaelaDRAFT_2400	210.0	0	N/A	N/A
structural_annotation	UHGV-0993209_27	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_28	phrog_156	127.1	1.1e-38	portal protein	head and packaging
eggNOG-mapper	UHGV-0993209_28	1121091.AUMP01000003_gene2583	270.0	0	N/A	N/A
structural_annotation	UHGV-0993209_28	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0993209_29	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_30	phrog_3287	56.5	3.2e-16	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0993209_30	871968.DESME_08885	94.0	5.12e-17	N/A	N/A
structural_annotation	UHGV-0993209_30	PF11134,MF_03027,NF010237,TIGR03511,COG2319	N/A	N/A	N/A	N/A
PHROG	UHGV-0993209_32	phrog_22978	850.7	0	N/A	unknown function
UniRef90	UHGV-0993209_32	UniRef90_UPI001C019A6F	816.0	0	OmpH family outer membrane protein	N/A
eggNOG-mapper	UHGV-0993209_32	1410650.JHWL01000003_gene2814	458.0	0	N/A	N/A
KOfam	UHGV-0993209_33	K10804	75.5	1.9e-22	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
Pfam	UHGV-0993209_33	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0993209_33	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0993209_34	K01447	53.5	0.0000000000000051	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0993209_34	phrog_15001	140.4	8.70066e-42	endolysin	lysis
UniRef90	UHGV-0993209_34	UniRef90_R6GU62	253.0	0	Sporulation domain-containing protein	N/A
eggNOG-mapper	UHGV-0993209_34	552398.HMPREF0866_01156	184.0	0	Ami_2	N/A
Pfam	UHGV-0993209_34	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0993209_34	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-0993209_35	phrog_1129	79.8	2.1e-23	holin	lysis
UniRef90	UHGV-0993209_35	UniRef90_A0A3D0M3S7	113.0	4.44e-31	Holin	N/A
eggNOG-mapper	UHGV-0993209_35	318464.IO99_00690	105.0	1.18e-28	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0993209_35	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0993209_35	PF16079	N/A	N/A	N/A	N/A
UniRef90	UHGV-0993209_37	UniRef90_A0A1K1P6Q6	105.0	6.6e-27	Phage integrase, N-terminal SAM-like domain	N/A
eggNOG-mapper	UHGV-0993209_37	537013.CLOSTMETH_02009	110.0	1.24e-27	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0993209_37	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
PHROG	UHGV-0993209_38	phrog_2657	180.6	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0993209_38	UniRef90_A7VTE4	447.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0993209_38	428125.CLOLEP_01836	447.0	0	COG NOG08824 non supervised orthologous group	N/A
Pfam	UHGV-0993209_38	PF04383	N/A	N/A	KilA-N domain	KilA-N
structural_annotation	UHGV-0993209_38	PF04383,NF033622,COG3943	N/A	N/A	N/A	N/A
KOfam	UHGV-0993209_40	K18830	71.1	2.1e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0993209_40	phrog_4	55.3	0.0000000000000017	transcriptional repressor	transcription regulation
UniRef90	UHGV-0993209_40	UniRef90_A0A412AV81	149.0	4.48416e-44	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0993209_40	1203606.HMPREF1526_01317	96.7	3.65e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0993209_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0993209_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0993209_40	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0993209_43	UniRef90_A0A4Z0YBW8	81.3	6.61e-18	Helix-turn-helix protein	N/A
UniRef90	UHGV-0993209_45	UniRef90_UPI00069FD66F	142.0	2.64e-36	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0993209_45	556268.OFAG_00835	150.0	5.27e-40	transposase activity	N/A
COG	UHGV-0993209_45	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-0993209_46	phrog_1033	68.2	7e-20	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0993209_46	UniRef90_UPI0013716616	281.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0993209_46	1042156.CXIVA_10310	168.0	0	Toxic component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-0993209_46	PF20188	N/A	N/A	N/A	DUF6551
COG	UHGV-0993209_46	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0993209_46	PF20188,MF_02015,TIGR03233,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0993209_47	UniRef90_A0A7C6JV16	59.3	0.000000000721	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0993209_47	646529.Desaci_3040	49.7	0.000000685	TIGRFAM DNA binding domain, excisionase family	N/A
Pfam	UHGV-0993209_49	PF00560	N/A	N/A	Leucine Rich Repeat	LRR_1
Pfam	UHGV-0993209_49	PF16675	N/A	N/A	KIX-binding domain of forkhead box O, CR2	FOXO_KIX_bdg