UHGV-1009392 (vOTU-129312)

Viral Genome: UHGV-1009392

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1009392
vOTU ID	vOTU-129312
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS2267612\|NODE_18_length_25487_cov_15.994220
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.8 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9816
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.95
Jumbo phage	No

Genome content
Genome length (bp)	25,487
GC content	57.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	43
CDS density	87%
Average CDS length (bps)	515.72
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.8)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1009392_1	1226322.HMPREF1545_00782	129.0	5.19e-35	N/A	N/A
COG	UHGV-1009392_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
PHROG	UHGV-1009392_2	phrog_872	146.4	2.8026e-45	N/A	unknown function
UniRef90	UHGV-1009392_2	UniRef90_UPI0019D0A8F9	275.0	0	N/A	N/A
eggNOG-mapper	UHGV-1009392_2	573413.Spirs_2170	168.0	0	N/A	N/A
Pfam	UHGV-1009392_2	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1009392_2	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1009392_2	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_3	phrog_23092	203.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1009392_3	1226322.HMPREF1545_00780	206.0	0	N/A	N/A
PHROG	UHGV-1009392_4	phrog_199	55.3	8.9e-16	holin	lysis
UniRef90	UHGV-1009392_4	UniRef90_U2RDN9	301.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-1009392_4	1226322.HMPREF1545_00779	301.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1009392_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
COG	UHGV-1009392_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1009392_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1009392_5	K04763	261.0	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1009392_5	phrog_1	199.3	0	integrase	integration and excision
UniRef90	UHGV-1009392_5	UniRef90_U2SWT8	464.0	0	Phage integrase, SAM-like domain protein	N/A
eggNOG-mapper	UHGV-1009392_5	1226322.HMPREF1545_00778	464.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1009392_5	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-1009392_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1009392_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1009392_5	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1009392_6	UniRef90_A0A4D7AHL6	230.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-1009392_6	1226322.HMPREF1545_00064	87.0	3.15e-17	N/A	N/A
structural_annotation	UHGV-1009392_6	PF18459	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1009392_7	1226322.HMPREF1545_00128	85.1	4.42e-20	N/A	N/A
UniRef90	UHGV-1009392_8	UniRef90_A0A8J6JAX9	48.5	0.00000186	XkdX family protein	N/A
structural_annotation	UHGV-1009392_8	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_9	phrog_4628	91.4	8.3e-27	tail fiber assembly	tail
UniRef90	UHGV-1009392_9	UniRef90_UPI000DF39224	72.8	0.0000000000000897	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-1009392_9	1226322.HMPREF1545_01055	248.0	0	N/A	N/A
Pfam	UHGV-1009392_9	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-1009392_9	PF16778	N/A	N/A	N/A	N/A
KOfam	UHGV-1009392_10	K24213	55.9	5e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-1009392_10	phrog_6320	84.6	1.6e-24	tail fiber protein	tail
UniRef90	UHGV-1009392_10	UniRef90_A0A4D7AHL6	109.0	7.33e-24	Collagen-like protein	N/A
eggNOG-mapper	UHGV-1009392_10	1226322.HMPREF1545_00064	110.0	1.18e-23	N/A	N/A
Pfam	UHGV-1009392_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-1009392_11	phrog_12105	160.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1009392_11	1226322.HMPREF1545_03850	256.0	0	N/A	N/A
PHROG	UHGV-1009392_12	phrog_13126	511.0	0	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1009392_12	UniRef90_U2ST91	765.0	0	Tetratricopeptide repeat protein (Fragment)	N/A
eggNOG-mapper	UHGV-1009392_12	1226322.HMPREF1545_03849	778.0	0	Glycosyl transferase, family 2	N/A
Pfam	UHGV-1009392_12	PF13428	N/A	N/A	Tetratricopeptide repeat	TPR_14
COG	UHGV-1009392_12	COG0463	N/A	N/A	Glycosyltransferase involved in cell wall bisynthesis	N/A
structural_annotation	UHGV-1009392_12	PF18768,PF13641,MF_00994,MF_00316,TIGR04195,COG0457,COG0463	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_13	phrog_371	138.3	6.09999e-41	major head protein	head and packaging
UniRef90	UHGV-1009392_13	UniRef90_A0A1Y4TDW7	320.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-1009392_13	1519439.JPJG01000060_gene1890	512.0	0	N/A	N/A
structural_annotation	UHGV-1009392_13	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_14	phrog_24113	67.0	2.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1009392_14	1519439.JPJG01000060_gene1889	110.0	4.9e-29	N/A	N/A
structural_annotation	UHGV-1009392_14	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_15	phrog_35275	652.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1009392_15	1226322.HMPREF1545_03846	432.0	0	N/A	N/A
PHROG	UHGV-1009392_16	phrog_30605	107.9	4.4e-32	N/A	unknown function
PHROG	UHGV-1009392_17	phrog_156	409.6	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1009392_17	1226322.HMPREF1545_03844	1226.0	0	N/A	N/A
structural_annotation	UHGV-1009392_17	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1009392_18	K21523	46.5	6e-19	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1009392_18	phrog_2	91.5	1.5e-26	terminase large subunit	head and packaging
UniRef90	UHGV-1009392_18	UniRef90_R6TQ60	562.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-1009392_18	693746.OBV_23980	561.0	0	phage Terminase large subunit	N/A
COG	UHGV-1009392_18	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1009392_18	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_19	phrog_606	45.6	0.00000000000078	terminase small subunit	head and packaging
eggNOG-mapper	UHGV-1009392_19	1519439.JPJG01000060_gene1884	170.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-1009392_19	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1009392_19	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_20	phrog_3584	213.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1009392_20	1226322.HMPREF1545_03841	524.0	0	N/A	N/A
structural_annotation	UHGV-1009392_20	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-1009392_21	K22299	53.6	0.0000000000000055	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1009392_21	phrog_8	71.9	1.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1009392_21	UniRef90_A0A4D7AHN1	158.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1009392_21	1226322.HMPREF1545_00039	77.4	8.01e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-1009392_21	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1009392_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1009392_21	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1009392_23	UniRef90_A0A1C5WAG7	155.0	0	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1009392_23	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1009392_23	PF14354	N/A	N/A	N/A	N/A
UniRef90	UHGV-1009392_24	UniRef90_A0A4R4CZG5	87.0	2.1e-20	N-acetyltransferase domain-containing protein	N/A
eggNOG-mapper	UHGV-1009392_24	693746.OBV_25300	88.2	2.25e-20	-acetyltransferase	N/A
Pfam	UHGV-1009392_24	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
COG	UHGV-1009392_24	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
PHROG	UHGV-1009392_27	phrog_25732	70.2	2.3e-20	N/A	unknown function
UniRef90	UHGV-1009392_27	UniRef90_A0A7G9WJW0	66.6	0.0000000000237	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1009392_27	NF011227	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1009392_28	742738.HMPREF9460_04055	69.3	0.0000000000000565	N/A	N/A
UniRef90	UHGV-1009392_30	UniRef90_A0A4D7ANR2	95.9	8.46e-24	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-1009392_30	742738.HMPREF9460_04054	73.2	0.00000000000000117	Restriction alleviation protein Lar	N/A
structural_annotation	UHGV-1009392_30	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_31	phrog_757	252.5	0	DNA methyltransferase	other
UniRef90	UHGV-1009392_31	UniRef90_A0A372V4B7	333.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1009392_31	485918.Cpin_3834	286.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1009392_31	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1009392_31	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1009392_32	K01160	52.4	0.000000000000016	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1009392_32	phrog_1682	72.4	7.5e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1009392_32	UniRef90_A0A1C5N534	246.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1009392_32	1235790.C805_00029	140.0	1.29004e-41	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1009392_32	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1009392_32	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_33	phrog_13246	97.6	1.3e-28	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1009392_33	UniRef90_A0A6M3IY07	103.0	1.9e-23	N/A	N/A
eggNOG-mapper	UHGV-1009392_33	1031288.AXAA01000044_gene1970	87.4	1.51e-17	N/A	N/A
Pfam	UHGV-1009392_33	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1009392_33	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1009392_34	K03111	146.6	2.49431e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1009392_34	phrog_44	142.5	2.49992e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1009392_34	UniRef90_A0A1C5N5W1	243.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1009392_34	411467.BACCAP_02389	192.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1009392_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1009392_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1009392_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1009392_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1009392_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_35	phrog_7545	60.5	3.8e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1009392_35	UniRef90_A0A8J6J193	317.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1009392_35	477184.KYC_12518	54.3	0.000000723	HNH endonuclease	N/A
Pfam	UHGV-1009392_35	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1009392_35	PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_36	phrog_7370	53.3	0.0000000000000047	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1009392_36	UniRef90_A0A2Z4QA94	166.0	0	Recombination protein	N/A
eggNOG-mapper	UHGV-1009392_36	445972.ANACOL_01826	67.8	0.000000000000263	HNH nucleases	N/A
Pfam	UHGV-1009392_36	PF13391	N/A	N/A	HNH endonuclease	HNH_2
PHROG	UHGV-1009392_37	phrog_72	60.2	3.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1009392_37	UniRef90_UPI001F3F3E5C	183.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1009392_37	445972.ANACOL_01825	132.0	6.41e-37	N/A	N/A
structural_annotation	UHGV-1009392_37	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1009392_38	phrog_155	73.4	3.7e-21	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1009392_38	UniRef90_A0A6N2RMY2	204.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-1009392_38	1134413.ANNK01000120_gene2068	67.4	0.0000000000713	ERF superfamily	N/A
Pfam	UHGV-1009392_38	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1009392_38	PF04404,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1009392_42	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1009392_43	K03666	101.6	5.8e-30	hfq; host factor-I protein	N/A
UniRef90	UHGV-1009392_43	UniRef90_A0A1C6B8N7	147.0	4.2039e-45	RNA-binding protein Hfq	N/A
eggNOG-mapper	UHGV-1009392_43	552398.HMPREF0866_02584	107.0	1.25e-29	RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs	N/A
Pfam	UHGV-1009392_43	PF17209	N/A	N/A	Hfq protein	Hfq
NCBIFam	UHGV-1009392_43	TIGR02383.1	N/A	N/A	RNA chaperone Hfq	N/A
COG	UHGV-1009392_43	COG1923	N/A	N/A	sRNA-binding regulator protein Hfq	N/A
HAMAP	UHGV-1009392_43	MF_00436	N/A	N/A	RNA-binding protein Hfq [hfq]	N/A