UHGV-1165186 (vOTU-020800)

Viral Genome: UHGV-1165186

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-1165186
vOTU ID	vOTU-020800
Representative Genome?	Yes
Source	HuVirDB
Original genome ID	SRS2563958\|NODE_17_length_38381_cov_18.850754
Associated BioSample	SAMN07646540
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.66 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9803
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.11
Jumbo phage	No

Genome content
Genome length (bp)	38,381
GC content	55.23%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	93%
Average CDS length (bps)	569.38
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.66)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1165186_1	phrog_156	235.0	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1165186_1	693746.OBV_23930	463.0	0	N/A	N/A
structural_annotation	UHGV-1165186_1	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_2	phrog_13046	45.2	0.00000000000041	N/A	unknown function
eggNOG-mapper	UHGV-1165186_2	693746.OBV_23880	103.0	1.13e-24	N/A	N/A
structural_annotation	UHGV-1165186_2	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1165186_3	665956.HMPREF1032_03918	116.0	8.45e-27	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-1165186_4	phrog_15594	83.4	1.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-1165186_4	1118055.CAGU01000013_gene763	65.9	0.00000000000115	N/A	N/A
structural_annotation	UHGV-1165186_4	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_5	phrog_31538	56.2	6.9e-16	N/A	unknown function
PHROG	UHGV-1165186_6	phrog_13589	205.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1165186_6	411460.RUMTOR_01324	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-1165186_7	290402.Cbei_3386	58.5	0.000000517	N/A	N/A
KOfam	UHGV-1165186_9	K07273	198.7	0	acm; lysozyme	N/A
PHROG	UHGV-1165186_9	phrog_291	153.7	1.4013e-45	endolysin	lysis
UniRef90	UHGV-1165186_9	UniRef90_UPI00164A97A0	195.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-1165186_9	1507.HMPREF0262_01614	147.0	1.24e-39	family 25	N/A
Pfam	UHGV-1165186_9	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1165186_9	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1165186_9	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_10	phrog_1009	40.6	0.000000000039	N/A	unknown function
eggNOG-mapper	UHGV-1165186_10	97138.C820_00248	62.0	0.0000000000126	N/A	N/A
PHROG	UHGV-1165186_11	phrog_1129	79.2	3.2e-23	holin	lysis
UniRef90	UHGV-1165186_11	UniRef90_A0A3R5ZDU6	135.0	6.15e-40	Holin	N/A
eggNOG-mapper	UHGV-1165186_11	1256908.HMPREF0373_00463	128.0	1.16e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1165186_11	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1165186_11	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1165186_12	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1165186_15	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1165186_17	1506994.JNLQ01000004_gene3618	210.0	0	N/A	N/A
UniRef90	UHGV-1165186_18	UniRef90_A0A4R1R5G7	77.8	3.22e-18	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-1165186_18	658088.HMPREF0987_00997	76.3	2.21e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-1165186_18	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-1165186_18	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-1165186_19	K14059	97.3	2.3e-28	int; integrase	N/A
PHROG	UHGV-1165186_19	phrog_1	102.4	5.7e-30	integrase	integration and excision
UniRef90	UHGV-1165186_19	UniRef90_UPI001897E1C8	162.0	1.07059e-42	site-specific integrase	N/A
eggNOG-mapper	UHGV-1165186_19	1410633.JHWR01000028_gene773	107.0	1.97e-23	Phage integrase family	N/A
Pfam	UHGV-1165186_19	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1165186_19	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1165186_19	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-1165186_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1165186_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1165186_20	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1165186_21	324057.Pjdr2_0635	55.8	0.000000174	N/A	N/A
structural_annotation	UHGV-1165186_21	PF10358	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_23	phrog_8	45.2	0.0000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-1165186_23	UniRef90_A0A329UR16	132.0	5.3e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1165186_23	1121085.AUCI01000010_gene502	51.6	0.00000208	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1165186_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1165186_23	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1165186_23	PF12844,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1165186_24	UniRef90_A0A329ULP4	99.0	5.79e-26	Excisionase	N/A
eggNOG-mapper	UHGV-1165186_24	1449050.JNLE01000005_gene3960	92.8	3.04e-24	Helix-turn-helix domain	N/A
Pfam	UHGV-1165186_24	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1165186_24	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1165186_25	PF21611	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1165186_26	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1165186_27	596152.DesU5LDRAFT_1910	88.6	7.49e-19	N/A	N/A
structural_annotation	UHGV-1165186_27	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1165186_28	PF11034	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_32	phrog_434	298.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1165186_32	UniRef90_A0A3D3XZF3	474.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1165186_32	1121344.JHZO01000003_gene985	299.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1165186_32	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1165186_32	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1165186_32	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1165186_32	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1165186_34	K07455	291.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1165186_34	phrog_148	274.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1165186_34	UniRef90_A0A3D3Y007	427.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1165186_34	1226322.HMPREF1545_00015	343.0	0	RecT family	N/A
Pfam	UHGV-1165186_34	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1165186_34	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1165186_34	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1165186_34	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1165186_35	K03111	136.3	3.4e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1165186_35	phrog_44	138.2	5.29999e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1165186_35	UniRef90_A0A3B9MU57	144.0	1.05994e-41	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1165186_35	1408436.JHXY01000007_gene409	145.0	1.46015e-42	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1165186_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1165186_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1165186_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1165186_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1165186_35	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1165186_36	K01160	43.9	0.0000000000062	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1165186_36	phrog_1682	67.2	2.6e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1165186_36	UniRef90_F6IZU4	96.7	2.91e-23	Prophage Lp2 protein 24	N/A
eggNOG-mapper	UHGV-1165186_36	220668.lp_2433	94.0	5.43e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1165186_36	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1165186_36	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_37	phrog_2245	83.8	2e-24	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1165186_37	293826.Amet_2596	54.3	0.000000109	N/A	N/A
structural_annotation	UHGV-1165186_37	NF001611,COG1694	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_38	phrog_111	162.3	0	DNA methyltransferase	other
UniRef90	UHGV-1165186_38	UniRef90_UPI000B356992	221.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1165186_38	760568.Desku_0784	206.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-1165186_38	oMTase_00015	181.7	0	orphan methyltransferase	RM
Pfam	UHGV-1165186_38	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1165186_38	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_42	phrog_6721	293.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1165186_42	665950.HMPREF1025_01974	278.0	0	N/A	N/A
structural_annotation	UHGV-1165186_42	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_46	phrog_18716	154.4	0	N/A	unknown function
UniRef90	UHGV-1165186_46	UniRef90_A0A5B9YFW1	171.0	0	N/A	N/A
eggNOG-mapper	UHGV-1165186_46	1508644.SFBmNL_00403	127.0	1.88e-35	N/A	N/A
Pfam	UHGV-1165186_46	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1165186_46	PF18909	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_47	phrog_3878	40.4	0.000000000054	N/A	unknown function
PHROG	UHGV-1165186_49	phrog_1163	253.0	0	N/A	unknown function
UniRef90	UHGV-1165186_49	UniRef90_UPI000BA6BB98	216.0	0	phage replisome organizer N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1165186_49	1122947.FR7_2509	215.0	0	Transcriptional regulator	N/A
Pfam	UHGV-1165186_49	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
Pfam	UHGV-1165186_49	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1165186_49	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1165186_49	COG1802	N/A	N/A	DNA-binding transcriptional regulator, GntR family	N/A
structural_annotation	UHGV-1165186_49	PF09681,PF09524,TIGR01714,TIGR02220,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-1165186_50	K02315	122.0	6.7e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1165186_50	phrog_50	115.3	6e-34	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1165186_50	UniRef90_A0A1C6HFV4	230.0	0	DNA replication protein	N/A
eggNOG-mapper	UHGV-1165186_50	445972.ANACOL_01829	197.0	0	N/A	N/A
Pfam	UHGV-1165186_50	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1165186_50	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1165186_50	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_51	phrog_36	73.3	4e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1165186_51	UniRef90_E6U9R4	52.0	0.00000919	Sigma-70 region 4 domain protein	N/A
eggNOG-mapper	UHGV-1165186_51	663278.Ethha_1825	52.0	0.00000154	N/A	N/A
Pfam	UHGV-1165186_51	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1165186_51	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1165186_51	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1165186_52	phrog_5070	139.2	1.40004e-41	N/A	unknown function
eggNOG-mapper	UHGV-1165186_52	929794.CALV01000014_gene27	80.1	0.0000000000000176	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-1165186_52	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-1165186_52	MF_01691,NF040481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1165186_53	1235798.C817_04600	64.7	0.00000000000442	N/A	N/A
structural_annotation	UHGV-1165186_53	PF13560,NF040522	N/A	N/A	N/A	N/A
UniRef90	UHGV-1165186_56	UniRef90_W1I3U4	144.0	3.46121e-43	Uncultured bacterium extrachromosomal DNA RGI00970	N/A
PHROG	UHGV-1165186_58	phrog_19458	270.7	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1165186_58	UniRef90_A0A1V5KAU2	206.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1165186_58	657322.FPR_26770	329.0	0	N/A	N/A
COG	UHGV-1165186_58	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-1165186_61	phrog_34979	69.5	5.3e-20	N/A	unknown function
UniRef90	UHGV-1165186_61	UniRef90_A0A1Y3RPR4	103.0	1.4e-25	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-1165186_61	1399942.U3PBI8_9CAUD	64.7	0.000000000013	N/A	N/A
structural_annotation	UHGV-1165186_61	PF08401	N/A	N/A	N/A	N/A
Pfam	UHGV-1165186_62	PF08681	N/A	N/A	N/A	DUF1778
structural_annotation	UHGV-1165186_62	PF03869	N/A	N/A	N/A	N/A